Experiment: McCas_formate_complete dimetridazole 0.00416666666666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS05485 and MMP_RS05490 are separated by 15 nucleotides MMP_RS05490 and MMP_RS05495 are separated by 30 nucleotides
MMP_RS05485: MMP_RS05485 - cysteine--tRNA ligase, at 1,051,556 to 1,052,986
_RS05485
MMP_RS05490: MMP_RS05490 - IMPACT family protein, at 1,053,002 to 1,053,610
_RS05490
MMP_RS05495: MMP_RS05495 - hypothetical protein, at 1,053,641 to 1,055,482
_RS05495
Position (kb)
1053
1054 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1052.221 kb on + strand, within MMP_RS05485 at 1052.242 kb on + strand, within MMP_RS05485 at 1052.381 kb on + strand, within MMP_RS05485 at 1052.587 kb on + strand, within MMP_RS05485 at 1052.799 kb on + strand, within MMP_RS05485 at 1052.839 kb on - strand, within MMP_RS05485 at 1052.905 kb on + strand at 1053.210 kb on + strand, within MMP_RS05490 at 1053.327 kb on - strand, within MMP_RS05490 at 1053.376 kb on - strand, within MMP_RS05490 at 1053.416 kb on - strand, within MMP_RS05490 at 1053.458 kb on + strand, within MMP_RS05490 at 1053.463 kb on - strand, within MMP_RS05490 at 1053.500 kb on - strand, within MMP_RS05490 at 1053.599 kb on - strand at 1053.606 kb on - strand at 1053.656 kb on + strand at 1053.658 kb on + strand at 1053.673 kb on + strand at 1053.706 kb on + strand at 1053.713 kb on + strand at 1053.740 kb on + strand at 1053.944 kb on - strand, within MMP_RS05495 at 1054.235 kb on + strand, within MMP_RS05495 at 1054.248 kb on - strand, within MMP_RS05495 at 1054.272 kb on + strand, within MMP_RS05495 at 1054.324 kb on + strand, within MMP_RS05495 at 1054.367 kb on + strand, within MMP_RS05495 at 1054.425 kb on - strand, within MMP_RS05495 at 1054.517 kb on - strand, within MMP_RS05495 at 1054.520 kb on - strand, within MMP_RS05495
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete dimetridazole 0.00416666666666667 mM remove 1,052,221 + MMP_RS05485 0.46 +2.8 1,052,242 + MMP_RS05485 0.48 +0.9 1,052,381 + MMP_RS05485 0.58 -1.4 1,052,587 + MMP_RS05485 0.72 -0.5 1,052,799 + MMP_RS05485 0.87 +1.4 1,052,839 - MMP_RS05485 0.90 +0.8 1,052,905 + -0.9 1,053,210 + MMP_RS05490 0.34 +0.1 1,053,327 - MMP_RS05490 0.53 -0.9 1,053,376 - MMP_RS05490 0.61 -0.7 1,053,416 - MMP_RS05490 0.68 -0.9 1,053,458 + MMP_RS05490 0.75 -0.1 1,053,463 - MMP_RS05490 0.76 -0.3 1,053,500 - MMP_RS05490 0.82 -0.4 1,053,599 - +0.0 1,053,606 - +2.8 1,053,656 + +0.6 1,053,658 + +0.4 1,053,673 + -0.7 1,053,706 + -0.3 1,053,713 + +1.3 1,053,740 + +0.6 1,053,944 - MMP_RS05495 0.16 +0.8 1,054,235 + MMP_RS05495 0.32 -0.1 1,054,248 - MMP_RS05495 0.33 +0.7 1,054,272 + MMP_RS05495 0.34 +0.5 1,054,324 + MMP_RS05495 0.37 +0.2 1,054,367 + MMP_RS05495 0.39 -1.4 1,054,425 - MMP_RS05495 0.43 -0.6 1,054,517 - MMP_RS05495 0.48 +0.1 1,054,520 - MMP_RS05495 0.48 -0.2
Or see this region's nucleotide sequence