Experiment: McCas_formate_complete dimetridazole 0.00416666666666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01625 and MMP_RS01630 are separated by 65 nucleotides MMP_RS01630 and MMP_RS01635 are separated by 46 nucleotides MMP_RS01635 and MMP_RS01640 are separated by 5 nucleotides
MMP_RS01625: MMP_RS01625 - rubredoxin, at 301,467 to 301,604
_RS01625
MMP_RS01630: MMP_RS01630 - N-glycosylase/DNA lyase, at 301,670 to 302,428
_RS01630
MMP_RS01635: MMP_RS01635 - thiamine pyrophosphate-dependent enzyme, at 302,475 to 303,335
_RS01635
MMP_RS01640: MMP_RS01640 - 2-oxoacid:acceptor oxidoreductase subunit alpha, at 303,341 to 305,053
_RS01640
Position (kb) 302
303
304 Strain fitness (log2 ratio) -1
0
1
2
3 at 301.530 kb on - strand, within MMP_RS01625 at 301.568 kb on + strand, within MMP_RS01625 at 301.569 kb on - strand, within MMP_RS01625 at 301.569 kb on - strand, within MMP_RS01625 at 301.569 kb on - strand, within MMP_RS01625 at 301.569 kb on - strand, within MMP_RS01625 at 301.569 kb on - strand, within MMP_RS01625 at 301.569 kb on - strand, within MMP_RS01625 at 301.569 kb on - strand, within MMP_RS01625 at 301.569 kb on - strand, within MMP_RS01625 at 301.569 kb on - strand, within MMP_RS01625 at 301.569 kb on - strand, within MMP_RS01625 at 301.569 kb on - strand, within MMP_RS01625 at 301.569 kb on - strand, within MMP_RS01625 at 301.569 kb on - strand, within MMP_RS01625 at 301.569 kb on - strand, within MMP_RS01625 at 301.569 kb on - strand, within MMP_RS01625 at 301.569 kb on - strand, within MMP_RS01625 at 301.569 kb on - strand, within MMP_RS01625 at 301.570 kb on + strand, within MMP_RS01625 at 301.570 kb on + strand, within MMP_RS01625 at 301.570 kb on + strand, within MMP_RS01625 at 301.570 kb on + strand, within MMP_RS01625 at 301.570 kb on + strand, within MMP_RS01625 at 301.570 kb on + strand, within MMP_RS01625 at 301.570 kb on + strand, within MMP_RS01625 at 301.570 kb on + strand, within MMP_RS01625 at 301.570 kb on + strand, within MMP_RS01625 at 301.570 kb on + strand, within MMP_RS01625 at 301.570 kb on + strand, within MMP_RS01625 at 301.582 kb on + strand, within MMP_RS01625 at 301.604 kb on - strand at 301.604 kb on - strand at 301.642 kb on - strand at 301.651 kb on + strand at 301.671 kb on - strand at 301.672 kb on + strand at 301.692 kb on + strand at 301.777 kb on - strand, within MMP_RS01630 at 302.105 kb on - strand, within MMP_RS01630 at 302.233 kb on - strand, within MMP_RS01630 at 302.237 kb on + strand, within MMP_RS01630 at 302.252 kb on - strand, within MMP_RS01630 at 302.338 kb on - strand, within MMP_RS01630 at 302.408 kb on - strand at 302.447 kb on - strand at 302.455 kb on + strand at 302.459 kb on + strand at 302.558 kb on + strand at 302.702 kb on + strand, within MMP_RS01635 at 302.748 kb on - strand, within MMP_RS01635 at 302.755 kb on + strand, within MMP_RS01635 at 302.958 kb on + strand, within MMP_RS01635 at 302.966 kb on + strand, within MMP_RS01635 at 302.966 kb on + strand, within MMP_RS01635 at 302.985 kb on - strand, within MMP_RS01635 at 303.047 kb on + strand, within MMP_RS01635 at 303.301 kb on + strand at 303.449 kb on - strand at 303.612 kb on - strand, within MMP_RS01640 at 304.001 kb on + strand, within MMP_RS01640 at 304.051 kb on + strand, within MMP_RS01640 at 304.052 kb on - strand, within MMP_RS01640 at 304.092 kb on + strand, within MMP_RS01640 at 304.160 kb on - strand, within MMP_RS01640 at 304.163 kb on - strand, within MMP_RS01640 at 304.284 kb on + strand, within MMP_RS01640 at 304.284 kb on + strand, within MMP_RS01640 at 304.313 kb on - strand, within MMP_RS01640
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete dimetridazole 0.00416666666666667 mM remove 301,530 - MMP_RS01625 0.46 -0.1 301,568 + MMP_RS01625 0.73 -0.1 301,569 - MMP_RS01625 0.74 +0.1 301,569 - MMP_RS01625 0.74 +0.4 301,569 - MMP_RS01625 0.74 +3.7 301,569 - MMP_RS01625 0.74 -0.4 301,569 - MMP_RS01625 0.74 +2.0 301,569 - MMP_RS01625 0.74 -0.0 301,569 - MMP_RS01625 0.74 +0.1 301,569 - MMP_RS01625 0.74 +0.2 301,569 - MMP_RS01625 0.74 +0.1 301,569 - MMP_RS01625 0.74 +0.2 301,569 - MMP_RS01625 0.74 -1.2 301,569 - MMP_RS01625 0.74 -0.6 301,569 - MMP_RS01625 0.74 -0.1 301,569 - MMP_RS01625 0.74 -1.2 301,569 - MMP_RS01625 0.74 +0.6 301,569 - MMP_RS01625 0.74 -0.0 301,569 - MMP_RS01625 0.74 +3.7 301,570 + MMP_RS01625 0.75 -1.0 301,570 + MMP_RS01625 0.75 +0.5 301,570 + MMP_RS01625 0.75 +1.1 301,570 + MMP_RS01625 0.75 -0.4 301,570 + MMP_RS01625 0.75 -0.4 301,570 + MMP_RS01625 0.75 +0.2 301,570 + MMP_RS01625 0.75 +0.4 301,570 + MMP_RS01625 0.75 +0.2 301,570 + MMP_RS01625 0.75 -0.2 301,570 + MMP_RS01625 0.75 -0.6 301,570 + MMP_RS01625 0.75 +2.7 301,582 + MMP_RS01625 0.83 +0.0 301,604 - +1.3 301,604 - +2.3 301,642 - -0.3 301,651 + +0.1 301,671 - -0.5 301,672 + -0.1 301,692 + +0.3 301,777 - MMP_RS01630 0.14 +1.9 302,105 - MMP_RS01630 0.57 +1.7 302,233 - MMP_RS01630 0.74 -0.1 302,237 + MMP_RS01630 0.75 +2.6 302,252 - MMP_RS01630 0.77 -0.9 302,338 - MMP_RS01630 0.88 +1.2 302,408 - +1.4 302,447 - +0.1 302,455 + +0.3 302,459 + -0.4 302,558 + +0.5 302,702 + MMP_RS01635 0.26 +0.3 302,748 - MMP_RS01635 0.32 -0.3 302,755 + MMP_RS01635 0.33 -0.4 302,958 + MMP_RS01635 0.56 -0.6 302,966 + MMP_RS01635 0.57 -0.5 302,966 + MMP_RS01635 0.57 -0.4 302,985 - MMP_RS01635 0.59 -1.2 303,047 + MMP_RS01635 0.66 -0.6 303,301 + +0.1 303,449 - -0.3 303,612 - MMP_RS01640 0.16 +0.4 304,001 + MMP_RS01640 0.39 -0.7 304,051 + MMP_RS01640 0.41 +2.1 304,052 - MMP_RS01640 0.42 +0.9 304,092 + MMP_RS01640 0.44 -0.4 304,160 - MMP_RS01640 0.48 +2.4 304,163 - MMP_RS01640 0.48 -1.0 304,284 + MMP_RS01640 0.55 -1.1 304,284 + MMP_RS01640 0.55 +0.3 304,313 - MMP_RS01640 0.57 -0.6
Or see this region's nucleotide sequence