Strain Fitness in Methanococcus maripaludis S2 around MMP_RS00875

Experiment: McCas_formate_complete 2-bromoethanesulfonic 0.1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMP_RS00870 and MMP_RS00875 are separated by 49 nucleotidesMMP_RS00875 and MMP_RS00880 are separated by 236 nucleotidesMMP_RS00880 and MMP_RS00885 are separated by 229 nucleotides MMP_RS00870: MMP_RS00870 - homocitrate synthase family protein, at 163,925 to 165,085 _RS00870 MMP_RS00875: MMP_RS00875 - methanogenesis marker 3 protein, at 165,135 to 166,640 _RS00875 MMP_RS00880: MMP_RS00880 - ribosome assembly RNA-binding protein YhbY, at 166,877 to 167,260 _RS00880 MMP_RS00885: MMP_RS00885 - 30S ribosomal protein S19e, at 167,490 to 167,915 _RS00885 Position (kb) 165 166 167Strain fitness (log2 ratio) -2 -1 0 1 2at 164.146 kb on + strandat 164.513 kb on + strandat 164.517 kb on - strandat 164.517 kb on - strandat 164.607 kb on + strandat 164.723 kb on + strandat 165.108 kb on - strandat 165.160 kb on - strandat 165.160 kb on - strandat 165.164 kb on - strandat 165.206 kb on - strandat 165.210 kb on - strandat 165.301 kb on - strandat 165.411 kb on - strandat 166.334 kb on - strandat 166.371 kb on - strandat 166.570 kb on - strandat 166.585 kb on + strandat 166.664 kb on + strandat 166.667 kb on - strandat 166.668 kb on + strandat 166.703 kb on - strandat 166.704 kb on + strandat 166.704 kb on + strandat 166.705 kb on - strandat 166.710 kb on + strandat 166.712 kb on + strandat 166.725 kb on - strandat 166.725 kb on - strandat 166.726 kb on + strandat 166.728 kb on - strandat 166.728 kb on - strandat 166.729 kb on + strandat 166.737 kb on + strandat 166.743 kb on + strandat 166.747 kb on - strandat 166.749 kb on - strandat 166.749 kb on - strandat 166.749 kb on - strandat 166.749 kb on - strandat 166.749 kb on - strandat 166.750 kb on + strandat 166.751 kb on - strandat 166.752 kb on + strandat 166.752 kb on + strandat 166.752 kb on + strandat 166.752 kb on + strandat 166.753 kb on - strandat 166.753 kb on - strandat 166.753 kb on - strandat 166.754 kb on + strandat 166.754 kb on + strandat 166.758 kb on - strandat 166.759 kb on + strandat 166.819 kb on + strandat 166.850 kb on - strandat 166.856 kb on - strandat 166.856 kb on - strandat 166.856 kb on - strandat 166.857 kb on + strandat 166.857 kb on + strandat 166.857 kb on + strandat 166.857 kb on + strandat 166.897 kb on + strandat 166.923 kb on - strand, within MMP_RS00880at 166.956 kb on - strand, within MMP_RS00880at 167.029 kb on - strand, within MMP_RS00880at 167.032 kb on + strand, within MMP_RS00880at 167.207 kb on - strand, within MMP_RS00880at 167.262 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete 2-bromoethanesulfonic 0.1 mM
remove
164,146 + +1.1
164,513 + +0.8
164,517 - +1.5
164,517 - -0.2
164,607 + +0.0
164,723 + -0.5
165,108 - -0.2
165,160 - +0.5
165,160 - +0.0
165,164 - +0.5
165,206 - -1.1
165,210 - +1.1
165,301 - -1.1
165,411 - +1.5
166,334 - -0.4
166,371 - -0.5
166,570 - +0.0
166,585 + +1.2
166,664 + -0.5
166,667 - -0.3
166,668 + +0.3
166,703 - +0.7
166,704 + +0.6
166,704 + +0.7
166,705 - -1.1
166,710 + +0.7
166,712 + -0.6
166,725 - +0.8
166,725 - +1.2
166,726 + -0.6
166,728 - +0.2
166,728 - +0.6
166,729 + -0.6
166,737 + -1.0
166,743 + -0.7
166,747 - -1.1
166,749 - +0.3
166,749 - +0.4
166,749 - +0.5
166,749 - +0.3
166,749 - -0.6
166,750 + +0.6
166,751 - -0.5
166,752 + +1.0
166,752 + -0.8
166,752 + +0.7
166,752 + +0.6
166,753 - -1.0
166,753 - +1.2
166,753 - -1.0
166,754 + -1.6
166,754 + -2.4
166,758 - +0.6
166,759 + -0.1
166,819 + +1.2
166,850 - -0.3
166,856 - -0.2
166,856 - -0.0
166,856 - -0.8
166,857 + -0.1
166,857 + +0.1
166,857 + +2.1
166,857 + -0.1
166,897 + -0.9
166,923 - MMP_RS00880 0.12 -0.0
166,956 - MMP_RS00880 0.21 -0.6
167,029 - MMP_RS00880 0.40 -1.2
167,032 + MMP_RS00880 0.40 +1.0
167,207 - MMP_RS00880 0.86 -0.1
167,262 + -0.5

Or see this region's nucleotide sequence