Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04345

Experiment: McCas_formate_complete Fluorophosphate 62.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS04335 and MMP_RS04340 are separated by 5 nucleotidesMMP_RS04340 and MMP_RS04345 are separated by 68 nucleotidesMMP_RS04345 and MMP_RS04350 are separated by 220 nucleotides MMP_RS04335: MMP_RS04335 - GTP-binding protein, at 827,876 to 828,784 _RS04335 MMP_RS04340: MMP_RS04340 - uroporphyrinogen decarboxylase, at 828,790 to 829,653 _RS04340 MMP_RS04345: MMP_RS04345 - MFS transporter, at 829,722 to 831,026 _RS04345 MMP_RS04350: MMP_RS04350 - 2-hydroxyacyl-CoA dehydratase family protein, at 831,247 to 832,368 _RS04350 Position (kb) 829 830 831 832Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 828.760 kb on + strandat 829.058 kb on - strand, within MMP_RS04340at 829.059 kb on + strand, within MMP_RS04340at 829.065 kb on - strand, within MMP_RS04340at 829.066 kb on + strand, within MMP_RS04340at 829.082 kb on + strand, within MMP_RS04340at 829.084 kb on - strand, within MMP_RS04340at 829.084 kb on - strand, within MMP_RS04340at 829.084 kb on - strand, within MMP_RS04340at 829.084 kb on - strand, within MMP_RS04340at 829.084 kb on - strand, within MMP_RS04340at 829.085 kb on + strand, within MMP_RS04340at 829.085 kb on + strand, within MMP_RS04340at 829.092 kb on - strand, within MMP_RS04340at 829.154 kb on - strand, within MMP_RS04340at 829.154 kb on - strand, within MMP_RS04340at 829.154 kb on - strand, within MMP_RS04340at 829.155 kb on + strand, within MMP_RS04340at 829.155 kb on + strand, within MMP_RS04340at 829.155 kb on + strand, within MMP_RS04340at 829.155 kb on + strand, within MMP_RS04340at 829.320 kb on - strand, within MMP_RS04340at 829.545 kb on - strand, within MMP_RS04340at 829.545 kb on - strand, within MMP_RS04340at 829.546 kb on + strand, within MMP_RS04340at 829.549 kb on - strand, within MMP_RS04340at 829.550 kb on + strand, within MMP_RS04340at 829.550 kb on + strand, within MMP_RS04340at 829.669 kb on - strandat 829.724 kb on + strandat 829.785 kb on - strandat 829.786 kb on + strandat 829.836 kb on + strandat 829.948 kb on + strand, within MMP_RS04345at 829.967 kb on + strand, within MMP_RS04345at 829.971 kb on - strand, within MMP_RS04345at 829.971 kb on - strand, within MMP_RS04345at 829.972 kb on + strand, within MMP_RS04345at 829.972 kb on + strand, within MMP_RS04345at 829.972 kb on + strand, within MMP_RS04345at 830.008 kb on - strand, within MMP_RS04345at 830.008 kb on - strand, within MMP_RS04345at 830.009 kb on + strand, within MMP_RS04345at 830.018 kb on - strand, within MMP_RS04345at 830.157 kb on - strand, within MMP_RS04345at 830.197 kb on - strand, within MMP_RS04345at 830.322 kb on - strand, within MMP_RS04345at 830.323 kb on + strand, within MMP_RS04345at 830.326 kb on + strand, within MMP_RS04345at 830.353 kb on + strand, within MMP_RS04345at 830.461 kb on + strand, within MMP_RS04345at 830.461 kb on + strand, within MMP_RS04345at 830.494 kb on + strand, within MMP_RS04345at 830.507 kb on - strand, within MMP_RS04345at 830.511 kb on - strand, within MMP_RS04345at 830.527 kb on + strand, within MMP_RS04345at 830.527 kb on + strand, within MMP_RS04345at 830.597 kb on - strand, within MMP_RS04345at 830.660 kb on - strand, within MMP_RS04345at 830.662 kb on - strand, within MMP_RS04345at 830.662 kb on - strand, within MMP_RS04345at 830.663 kb on + strand, within MMP_RS04345at 830.663 kb on + strand, within MMP_RS04345at 830.729 kb on - strand, within MMP_RS04345at 830.836 kb on - strand, within MMP_RS04345at 830.862 kb on - strand, within MMP_RS04345at 830.901 kb on + strandat 830.953 kb on - strandat 830.989 kb on - strandat 831.028 kb on - strandat 831.028 kb on - strandat 831.028 kb on - strandat 831.028 kb on - strandat 831.028 kb on - strandat 831.205 kb on + strandat 831.208 kb on + strandat 831.212 kb on - strandat 831.212 kb on - strandat 831.212 kb on - strandat 831.213 kb on + strandat 831.219 kb on - strandat 831.225 kb on + strandat 831.258 kb on + strandat 831.338 kb on - strandat 831.375 kb on - strand, within MMP_RS04350at 831.376 kb on + strand, within MMP_RS04350at 831.378 kb on + strand, within MMP_RS04350at 831.463 kb on + strand, within MMP_RS04350at 831.463 kb on + strand, within MMP_RS04350at 831.477 kb on - strand, within MMP_RS04350at 831.607 kb on - strand, within MMP_RS04350at 831.686 kb on + strand, within MMP_RS04350at 831.789 kb on + strand, within MMP_RS04350at 831.871 kb on + strand, within MMP_RS04350at 831.893 kb on - strand, within MMP_RS04350at 831.894 kb on + strand, within MMP_RS04350at 831.894 kb on + strand, within MMP_RS04350at 831.934 kb on - strand, within MMP_RS04350

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete Fluorophosphate 62.5 mM
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828,760 + +0.1
829,058 - MMP_RS04340 0.31 +0.4
829,059 + MMP_RS04340 0.31 +1.6
829,065 - MMP_RS04340 0.32 -1.0
829,066 + MMP_RS04340 0.32 +0.7
829,082 + MMP_RS04340 0.34 -1.1
829,084 - MMP_RS04340 0.34 +0.3
829,084 - MMP_RS04340 0.34 +0.7
829,084 - MMP_RS04340 0.34 -0.4
829,084 - MMP_RS04340 0.34 -1.5
829,084 - MMP_RS04340 0.34 -2.7
829,085 + MMP_RS04340 0.34 +1.4
829,085 + MMP_RS04340 0.34 -0.3
829,092 - MMP_RS04340 0.35 +0.1
829,154 - MMP_RS04340 0.42 -2.6
829,154 - MMP_RS04340 0.42 -0.7
829,154 - MMP_RS04340 0.42 +0.1
829,155 + MMP_RS04340 0.42 +0.7
829,155 + MMP_RS04340 0.42 -0.9
829,155 + MMP_RS04340 0.42 -1.3
829,155 + MMP_RS04340 0.42 -1.7
829,320 - MMP_RS04340 0.61 +0.4
829,545 - MMP_RS04340 0.87 -0.3
829,545 - MMP_RS04340 0.87 -0.1
829,546 + MMP_RS04340 0.88 -2.8
829,549 - MMP_RS04340 0.88 -0.1
829,550 + MMP_RS04340 0.88 -1.6
829,550 + MMP_RS04340 0.88 -0.0
829,669 - -1.4
829,724 + -0.3
829,785 - +0.0
829,786 + -0.3
829,836 + -0.2
829,948 + MMP_RS04345 0.17 +0.5
829,967 + MMP_RS04345 0.19 +0.2
829,971 - MMP_RS04345 0.19 +2.2
829,971 - MMP_RS04345 0.19 -0.8
829,972 + MMP_RS04345 0.19 -0.4
829,972 + MMP_RS04345 0.19 -0.8
829,972 + MMP_RS04345 0.19 +0.2
830,008 - MMP_RS04345 0.22 +0.6
830,008 - MMP_RS04345 0.22 -4.1
830,009 + MMP_RS04345 0.22 -0.0
830,018 - MMP_RS04345 0.23 -0.1
830,157 - MMP_RS04345 0.33 +0.1
830,197 - MMP_RS04345 0.36 -0.8
830,322 - MMP_RS04345 0.46 -0.8
830,323 + MMP_RS04345 0.46 -2.8
830,326 + MMP_RS04345 0.46 -0.4
830,353 + MMP_RS04345 0.48 -0.6
830,461 + MMP_RS04345 0.57 -0.2
830,461 + MMP_RS04345 0.57 -1.0
830,494 + MMP_RS04345 0.59 +0.4
830,507 - MMP_RS04345 0.60 +0.3
830,511 - MMP_RS04345 0.60 -1.1
830,527 + MMP_RS04345 0.62 -0.6
830,527 + MMP_RS04345 0.62 -0.2
830,597 - MMP_RS04345 0.67 -0.5
830,660 - MMP_RS04345 0.72 -1.1
830,662 - MMP_RS04345 0.72 +0.5
830,662 - MMP_RS04345 0.72 +0.5
830,663 + MMP_RS04345 0.72 +0.3
830,663 + MMP_RS04345 0.72 -0.1
830,729 - MMP_RS04345 0.77 -0.4
830,836 - MMP_RS04345 0.85 +0.3
830,862 - MMP_RS04345 0.87 -1.7
830,901 + +0.6
830,953 - +0.2
830,989 - -1.3
831,028 - -0.4
831,028 - +0.3
831,028 - +0.0
831,028 - -4.7
831,028 - +1.1
831,205 + -0.7
831,208 + +0.4
831,212 - -4.8
831,212 - -0.6
831,212 - +0.7
831,213 + -2.4
831,219 - +0.6
831,225 + +0.3
831,258 + +0.0
831,338 - +0.1
831,375 - MMP_RS04350 0.11 -1.1
831,376 + MMP_RS04350 0.11 +0.1
831,378 + MMP_RS04350 0.12 -4.1
831,463 + MMP_RS04350 0.19 +0.1
831,463 + MMP_RS04350 0.19 +0.6
831,477 - MMP_RS04350 0.20 -0.1
831,607 - MMP_RS04350 0.32 +1.0
831,686 + MMP_RS04350 0.39 +0.1
831,789 + MMP_RS04350 0.48 -0.3
831,871 + MMP_RS04350 0.56 +1.5
831,893 - MMP_RS04350 0.58 +1.2
831,894 + MMP_RS04350 0.58 -4.4
831,894 + MMP_RS04350 0.58 -0.5
831,934 - MMP_RS04350 0.61 -1.0

Or see this region's nucleotide sequence