Experiment: McCas_formate_complete Fluorophosphate 62.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04155 and MMP_RS04160 are separated by 71 nucleotides MMP_RS04160 and MMP_RS04165 are separated by 309 nucleotides
MMP_RS04155: MMP_RS04155 - MFS transporter, at 789,385 to 790,590
_RS04155
MMP_RS04160: MMP_RS04160 - hypothetical protein, at 790,662 to 791,330
_RS04160
MMP_RS04165: MMP_RS04165 - TetR/AcrR family transcriptional regulator, at 791,640 to 792,218
_RS04165
Position (kb) 790
791
792 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 789.662 kb on - strand, within MMP_RS04155 at 789.663 kb on + strand, within MMP_RS04155 at 789.663 kb on + strand, within MMP_RS04155 at 789.670 kb on - strand, within MMP_RS04155 at 789.671 kb on + strand, within MMP_RS04155 at 789.747 kb on - strand, within MMP_RS04155 at 789.748 kb on + strand, within MMP_RS04155 at 789.748 kb on + strand, within MMP_RS04155 at 789.754 kb on - strand, within MMP_RS04155 at 789.754 kb on - strand, within MMP_RS04155 at 789.754 kb on - strand, within MMP_RS04155 at 789.755 kb on + strand, within MMP_RS04155 at 789.755 kb on + strand, within MMP_RS04155 at 789.755 kb on + strand, within MMP_RS04155 at 789.757 kb on + strand, within MMP_RS04155 at 789.894 kb on + strand, within MMP_RS04155 at 789.895 kb on - strand, within MMP_RS04155 at 789.896 kb on + strand, within MMP_RS04155 at 789.896 kb on + strand, within MMP_RS04155 at 789.897 kb on - strand, within MMP_RS04155 at 789.897 kb on - strand, within MMP_RS04155 at 789.897 kb on - strand, within MMP_RS04155 at 789.903 kb on + strand, within MMP_RS04155 at 790.123 kb on + strand, within MMP_RS04155 at 790.228 kb on + strand, within MMP_RS04155 at 790.266 kb on - strand, within MMP_RS04155 at 790.270 kb on - strand, within MMP_RS04155 at 790.418 kb on + strand, within MMP_RS04155 at 790.419 kb on - strand, within MMP_RS04155 at 790.420 kb on + strand, within MMP_RS04155 at 790.424 kb on - strand, within MMP_RS04155 at 790.452 kb on - strand, within MMP_RS04155 at 790.452 kb on - strand, within MMP_RS04155 at 790.453 kb on + strand, within MMP_RS04155 at 790.526 kb on - strand at 790.527 kb on + strand at 790.654 kb on - strand at 790.661 kb on + strand at 790.684 kb on - strand at 790.708 kb on - strand at 790.712 kb on - strand at 790.736 kb on - strand, within MMP_RS04160 at 790.736 kb on - strand, within MMP_RS04160 at 790.736 kb on - strand, within MMP_RS04160 at 790.737 kb on + strand, within MMP_RS04160 at 790.737 kb on + strand, within MMP_RS04160 at 790.737 kb on + strand, within MMP_RS04160 at 790.737 kb on + strand, within MMP_RS04160 at 790.738 kb on - strand, within MMP_RS04160 at 790.739 kb on + strand, within MMP_RS04160 at 790.765 kb on - strand, within MMP_RS04160 at 790.864 kb on - strand, within MMP_RS04160 at 790.865 kb on + strand, within MMP_RS04160 at 790.865 kb on + strand, within MMP_RS04160 at 790.907 kb on - strand, within MMP_RS04160 at 790.908 kb on + strand, within MMP_RS04160 at 790.910 kb on - strand, within MMP_RS04160 at 790.910 kb on - strand, within MMP_RS04160 at 790.911 kb on + strand, within MMP_RS04160 at 790.911 kb on + strand, within MMP_RS04160 at 790.927 kb on + strand, within MMP_RS04160 at 790.931 kb on - strand, within MMP_RS04160 at 790.931 kb on - strand, within MMP_RS04160 at 790.967 kb on + strand, within MMP_RS04160 at 790.967 kb on + strand, within MMP_RS04160 at 790.976 kb on - strand, within MMP_RS04160 at 790.977 kb on + strand, within MMP_RS04160 at 790.986 kb on - strand, within MMP_RS04160 at 790.994 kb on + strand, within MMP_RS04160 at 791.007 kb on - strand, within MMP_RS04160 at 791.008 kb on + strand, within MMP_RS04160 at 791.104 kb on - strand, within MMP_RS04160 at 791.105 kb on + strand, within MMP_RS04160 at 791.122 kb on - strand, within MMP_RS04160 at 791.147 kb on - strand, within MMP_RS04160 at 791.148 kb on + strand, within MMP_RS04160 at 791.217 kb on - strand, within MMP_RS04160 at 791.234 kb on - strand, within MMP_RS04160 at 791.241 kb on + strand, within MMP_RS04160 at 791.283 kb on - strand at 791.293 kb on + strand at 791.305 kb on + strand at 791.305 kb on + strand at 791.307 kb on + strand at 791.307 kb on + strand at 791.323 kb on + strand at 791.347 kb on - strand at 791.349 kb on - strand at 791.356 kb on - strand at 791.357 kb on + strand at 791.389 kb on + strand at 791.443 kb on - strand at 791.444 kb on + strand at 791.445 kb on - strand at 791.446 kb on + strand at 791.446 kb on + strand at 791.501 kb on - strand at 791.504 kb on - strand at 791.513 kb on - strand at 791.514 kb on + strand at 791.517 kb on - strand at 791.521 kb on - strand at 791.552 kb on + strand at 791.566 kb on + strand at 791.569 kb on - strand at 791.569 kb on - strand at 791.570 kb on + strand at 791.582 kb on + strand at 791.590 kb on + strand at 791.592 kb on - strand at 791.598 kb on + strand at 791.635 kb on - strand at 791.636 kb on + strand at 791.636 kb on + strand at 791.636 kb on + strand at 791.637 kb on - strand at 791.637 kb on - strand at 791.637 kb on - strand at 791.638 kb on + strand at 791.638 kb on + strand at 791.638 kb on + strand at 791.638 kb on + strand at 791.638 kb on + strand at 791.640 kb on + strand at 792.005 kb on + strand, within MMP_RS04165 at 792.016 kb on + strand, within MMP_RS04165 at 792.074 kb on + strand, within MMP_RS04165 at 792.124 kb on - strand, within MMP_RS04165 at 792.171 kb on + strand at 792.273 kb on + strand at 792.273 kb on + strand at 792.295 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Fluorophosphate 62.5 mM remove 789,662 - MMP_RS04155 0.23 -0.7 789,663 + MMP_RS04155 0.23 -1.8 789,663 + MMP_RS04155 0.23 -2.1 789,670 - MMP_RS04155 0.24 +1.0 789,671 + MMP_RS04155 0.24 -0.8 789,747 - MMP_RS04155 0.30 -2.5 789,748 + MMP_RS04155 0.30 +0.2 789,748 + MMP_RS04155 0.30 +0.1 789,754 - MMP_RS04155 0.31 +0.1 789,754 - MMP_RS04155 0.31 +0.2 789,754 - MMP_RS04155 0.31 -0.5 789,755 + MMP_RS04155 0.31 -0.0 789,755 + MMP_RS04155 0.31 -0.2 789,755 + MMP_RS04155 0.31 -0.7 789,757 + MMP_RS04155 0.31 +0.3 789,894 + MMP_RS04155 0.42 -0.2 789,895 - MMP_RS04155 0.42 -0.9 789,896 + MMP_RS04155 0.42 -1.6 789,896 + MMP_RS04155 0.42 +0.8 789,897 - MMP_RS04155 0.42 -0.5 789,897 - MMP_RS04155 0.42 +0.2 789,897 - MMP_RS04155 0.42 -3.2 789,903 + MMP_RS04155 0.43 -0.2 790,123 + MMP_RS04155 0.61 +0.2 790,228 + MMP_RS04155 0.70 -0.6 790,266 - MMP_RS04155 0.73 +0.3 790,270 - MMP_RS04155 0.73 +0.2 790,418 + MMP_RS04155 0.86 +1.4 790,419 - MMP_RS04155 0.86 +1.5 790,420 + MMP_RS04155 0.86 -0.1 790,424 - MMP_RS04155 0.86 -0.6 790,452 - MMP_RS04155 0.88 +0.7 790,452 - MMP_RS04155 0.88 +0.0 790,453 + MMP_RS04155 0.89 +0.3 790,526 - -2.0 790,527 + -1.9 790,654 - +0.6 790,661 + +0.7 790,684 - -0.0 790,708 - +1.2 790,712 - -1.4 790,736 - MMP_RS04160 0.11 -1.4 790,736 - MMP_RS04160 0.11 -0.3 790,736 - MMP_RS04160 0.11 +0.5 790,737 + MMP_RS04160 0.11 -0.6 790,737 + MMP_RS04160 0.11 -1.5 790,737 + MMP_RS04160 0.11 -3.2 790,737 + MMP_RS04160 0.11 -0.2 790,738 - MMP_RS04160 0.11 -0.7 790,739 + MMP_RS04160 0.12 -0.6 790,765 - MMP_RS04160 0.15 +1.0 790,864 - MMP_RS04160 0.30 -2.2 790,865 + MMP_RS04160 0.30 +0.1 790,865 + MMP_RS04160 0.30 -0.3 790,907 - MMP_RS04160 0.37 +0.7 790,908 + MMP_RS04160 0.37 -0.5 790,910 - MMP_RS04160 0.37 +0.8 790,910 - MMP_RS04160 0.37 -1.7 790,911 + MMP_RS04160 0.37 -4.5 790,911 + MMP_RS04160 0.37 -0.3 790,927 + MMP_RS04160 0.40 -1.5 790,931 - MMP_RS04160 0.40 -1.8 790,931 - MMP_RS04160 0.40 -1.8 790,967 + MMP_RS04160 0.46 +0.7 790,967 + MMP_RS04160 0.46 +1.6 790,976 - MMP_RS04160 0.47 +0.5 790,977 + MMP_RS04160 0.47 +0.1 790,986 - MMP_RS04160 0.48 -0.8 790,994 + MMP_RS04160 0.50 +0.1 791,007 - MMP_RS04160 0.52 -3.6 791,008 + MMP_RS04160 0.52 -0.9 791,104 - MMP_RS04160 0.66 +0.0 791,105 + MMP_RS04160 0.66 -0.4 791,122 - MMP_RS04160 0.69 -0.7 791,147 - MMP_RS04160 0.72 +1.2 791,148 + MMP_RS04160 0.73 -0.0 791,217 - MMP_RS04160 0.83 +1.0 791,234 - MMP_RS04160 0.86 +0.6 791,241 + MMP_RS04160 0.87 -0.3 791,283 - +0.2 791,293 + -1.3 791,305 + -0.6 791,305 + +0.6 791,307 + -0.4 791,307 + +0.8 791,323 + -1.4 791,347 - -2.7 791,349 - +0.8 791,356 - +1.1 791,357 + +0.4 791,389 + +0.1 791,443 - +1.4 791,444 + -0.8 791,445 - +0.7 791,446 + -3.1 791,446 + +0.4 791,501 - +1.0 791,504 - +0.8 791,513 - +0.1 791,514 + +0.0 791,517 - -0.5 791,521 - +0.9 791,552 + -1.2 791,566 + -0.8 791,569 - +2.1 791,569 - -0.3 791,570 + +0.4 791,582 + -0.6 791,590 + -0.1 791,592 - -0.1 791,598 + +0.0 791,635 - -1.9 791,636 + -0.5 791,636 + -0.3 791,636 + +0.9 791,637 - +0.3 791,637 - +0.0 791,637 - +0.1 791,638 + +0.4 791,638 + +0.1 791,638 + -0.4 791,638 + +0.9 791,638 + -0.7 791,640 + -0.4 792,005 + MMP_RS04165 0.63 +0.2 792,016 + MMP_RS04165 0.65 +1.0 792,074 + MMP_RS04165 0.75 +0.1 792,124 - MMP_RS04165 0.84 -0.5 792,171 + +0.4 792,273 + -0.6 792,273 + -0.2 792,295 - +0.9
Or see this region's nucleotide sequence