Strain Fitness in Methanococcus maripaludis S2 around MMP_RS02810

Experiment: McCas_formate_complete Fluorophosphate 62.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS02800 and MMP_RS02805 overlap by 14 nucleotidesMMP_RS02805 and MMP_RS02810 are separated by 157 nucleotidesMMP_RS02810 and MMP_RS02815 are separated by 114 nucleotidesMMP_RS02815 and MMP_RS02820 are separated by 6 nucleotidesMMP_RS02820 and MMP_RS02825 are separated by 4 nucleotides MMP_RS02800: MMP_RS02800 - nucleotidyltransferase domain-containing protein, at 535,522 to 536,139 _RS02800 MMP_RS02805: MMP_RS02805 - HEPN domain-containing protein, at 536,126 to 536,635 _RS02805 MMP_RS02810: MMP_RS02810 - hypothetical protein, at 536,793 to 538,262 _RS02810 MMP_RS02815: MMP_RS02815 - hypothetical protein, at 538,377 to 538,952 _RS02815 MMP_RS02820: MMP_RS02820 - hypothetical protein, at 538,959 to 539,189 _RS02820 MMP_RS02825: MMP_RS02825 - mechanosensitive ion channel family protein, at 539,194 to 540,276 _RS02825 Position (kb) 536 537 538 539Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 535.998 kb on + strand, within MMP_RS02800at 536.013 kb on + strand, within MMP_RS02800at 536.060 kb on - strand, within MMP_RS02800at 536.144 kb on - strandat 536.318 kb on + strand, within MMP_RS02805at 536.714 kb on - strandat 536.742 kb on - strandat 536.761 kb on - strandat 536.761 kb on - strandat 536.761 kb on - strandat 536.773 kb on + strandat 536.848 kb on - strandat 536.850 kb on - strandat 536.851 kb on + strandat 537.199 kb on - strand, within MMP_RS02810at 537.239 kb on + strand, within MMP_RS02810at 537.242 kb on + strand, within MMP_RS02810at 537.243 kb on - strand, within MMP_RS02810at 537.272 kb on - strand, within MMP_RS02810at 537.273 kb on + strand, within MMP_RS02810at 537.275 kb on + strand, within MMP_RS02810at 537.277 kb on + strand, within MMP_RS02810at 537.277 kb on + strand, within MMP_RS02810at 537.314 kb on + strand, within MMP_RS02810at 537.406 kb on - strand, within MMP_RS02810at 537.450 kb on - strand, within MMP_RS02810at 537.450 kb on - strand, within MMP_RS02810at 537.638 kb on + strand, within MMP_RS02810at 537.705 kb on + strand, within MMP_RS02810at 537.976 kb on - strand, within MMP_RS02810at 538.472 kb on - strand, within MMP_RS02815at 538.847 kb on + strand, within MMP_RS02815at 538.976 kb on - strandat 538.977 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete Fluorophosphate 62.5 mM
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535,998 + MMP_RS02800 0.77 +1.8
536,013 + MMP_RS02800 0.79 +1.0
536,060 - MMP_RS02800 0.87 -1.5
536,144 - +0.2
536,318 + MMP_RS02805 0.38 +0.3
536,714 - +0.7
536,742 - -0.4
536,761 - -0.7
536,761 - +0.1
536,761 - -0.8
536,773 + -0.3
536,848 - -0.3
536,850 - -0.9
536,851 + +0.5
537,199 - MMP_RS02810 0.28 -0.2
537,239 + MMP_RS02810 0.30 -0.8
537,242 + MMP_RS02810 0.31 -0.5
537,243 - MMP_RS02810 0.31 +0.5
537,272 - MMP_RS02810 0.33 +0.2
537,273 + MMP_RS02810 0.33 -0.1
537,275 + MMP_RS02810 0.33 -0.3
537,277 + MMP_RS02810 0.33 +0.6
537,277 + MMP_RS02810 0.33 -3.2
537,314 + MMP_RS02810 0.35 -0.6
537,406 - MMP_RS02810 0.42 +0.1
537,450 - MMP_RS02810 0.45 +0.3
537,450 - MMP_RS02810 0.45 -1.0
537,638 + MMP_RS02810 0.57 +0.4
537,705 + MMP_RS02810 0.62 -3.6
537,976 - MMP_RS02810 0.80 +0.6
538,472 - MMP_RS02815 0.16 +0.3
538,847 + MMP_RS02815 0.82 -0.1
538,976 - -0.4
538,977 + -1.9

Or see this region's nucleotide sequence