Strain Fitness in Methanococcus maripaludis S2 around MMP_RS01105

Experiment: McCas_formate_complete Fluorophosphate 62.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMP_RS01095 and MMP_RS01100 overlap by 1 nucleotidesMMP_RS01100 and MMP_RS01105 are separated by 29 nucleotidesMMP_RS01105 and MMP_RS01110 are separated by 16 nucleotidesMMP_RS01110 and MMP_RS01115 are separated by 26 nucleotides MMP_RS01095: MMP_RS01095 - iron ABC transporter permease, at 205,086 to 206,036 _RS01095 MMP_RS01100: MMP_RS01100 - ABC transporter ATP-binding protein, at 206,036 to 206,818 _RS01100 MMP_RS01105: MMP_RS01105 - hypothetical protein, at 206,848 to 207,624 _RS01105 MMP_RS01110: MMP_RS01110 - FmdE family protein, at 207,641 to 208,225 _RS01110 MMP_RS01115: MMP_RS01115 - molybdopterin molybdotransferase MoeA, at 208,252 to 209,379 _RS01115 Position (kb) 206 207 208Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 205.970 kb on - strandat 206.015 kb on + strandat 206.034 kb on - strandat 206.095 kb on - strandat 206.102 kb on + strandat 206.126 kb on + strand, within MMP_RS01100at 206.128 kb on + strand, within MMP_RS01100at 206.761 kb on - strandat 206.803 kb on + strandat 206.948 kb on - strand, within MMP_RS01105at 207.053 kb on - strand, within MMP_RS01105at 207.053 kb on - strand, within MMP_RS01105at 207.054 kb on + strand, within MMP_RS01105at 207.054 kb on + strand, within MMP_RS01105at 207.054 kb on + strand, within MMP_RS01105at 207.064 kb on + strand, within MMP_RS01105at 207.365 kb on - strand, within MMP_RS01105at 207.383 kb on - strand, within MMP_RS01105at 207.390 kb on - strand, within MMP_RS01105at 207.390 kb on - strand, within MMP_RS01105at 207.652 kb on + strandat 207.817 kb on - strand, within MMP_RS01110at 208.044 kb on - strand, within MMP_RS01110at 208.045 kb on + strand, within MMP_RS01110at 208.165 kb on - strand, within MMP_RS01110at 208.278 kb on - strandat 208.299 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete Fluorophosphate 62.5 mM
remove
205,970 - -2.6
206,015 + -0.6
206,034 - -0.8
206,095 - +0.8
206,102 + +1.0
206,126 + MMP_RS01100 0.11 -3.9
206,128 + MMP_RS01100 0.12 +0.2
206,761 - -0.5
206,803 + +0.6
206,948 - MMP_RS01105 0.13 -0.4
207,053 - MMP_RS01105 0.26 +0.7
207,053 - MMP_RS01105 0.26 -2.2
207,054 + MMP_RS01105 0.27 -1.1
207,054 + MMP_RS01105 0.27 -0.2
207,054 + MMP_RS01105 0.27 -0.7
207,064 + MMP_RS01105 0.28 +0.1
207,365 - MMP_RS01105 0.67 +0.3
207,383 - MMP_RS01105 0.69 -2.5
207,390 - MMP_RS01105 0.70 +0.8
207,390 - MMP_RS01105 0.70 +0.5
207,652 + +1.2
207,817 - MMP_RS01110 0.30 +0.3
208,044 - MMP_RS01110 0.69 +0.8
208,045 + MMP_RS01110 0.69 -1.1
208,165 - MMP_RS01110 0.90 -0.4
208,278 - +0.3
208,299 - +0.8

Or see this region's nucleotide sequence