Strain Fitness in Methanococcus maripaludis S2 around MMP_RS00795

Experiment: McCas_formate_complete Fluorophosphate 62.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS00785 and MMP_RS00795 are separated by 626 nucleotidesMMP_RS00795 and MMP_RS00800 are separated by 23 nucleotides MMP_RS00785: MMP_RS00785 - deoxyhypusine synthase, at 143,404 to 144,411 _RS00785 MMP_RS00795: MMP_RS00795 - formate dehydrogenase H subunit alpha selenocysteine-containing, at 145,038 to 147,068 _RS00795 MMP_RS00800: MMP_RS00800 - Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain, at 147,092 to 148,219 _RS00800 Position (kb) 145 146 147 148Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 144.064 kb on + strandat 144.131 kb on - strandat 144.253 kb on - strandat 144.253 kb on - strandat 144.254 kb on + strandat 144.406 kb on + strandat 144.511 kb on + strandat 144.537 kb on - strandat 144.537 kb on - strandat 144.709 kb on - strandat 144.899 kb on - strandat 144.960 kb on + strandat 145.061 kb on - strandat 145.066 kb on - strandat 145.066 kb on - strandat 145.105 kb on - strandat 145.565 kb on + strand, within MMP_RS00795at 145.800 kb on - strand, within MMP_RS00795at 146.097 kb on - strand, within MMP_RS00795at 146.135 kb on + strand, within MMP_RS00795at 146.242 kb on - strand, within MMP_RS00795at 146.516 kb on + strand, within MMP_RS00795at 146.731 kb on - strand, within MMP_RS00795at 146.732 kb on + strand, within MMP_RS00795at 146.735 kb on - strand, within MMP_RS00795at 146.736 kb on + strand, within MMP_RS00795at 146.795 kb on - strand, within MMP_RS00795at 146.905 kb on - strandat 146.923 kb on - strandat 146.952 kb on - strandat 146.992 kb on - strandat 147.035 kb on + strandat 147.098 kb on - strandat 147.176 kb on - strandat 147.396 kb on - strand, within MMP_RS00800at 147.440 kb on + strand, within MMP_RS00800at 147.440 kb on + strand, within MMP_RS00800at 147.440 kb on + strand, within MMP_RS00800at 147.507 kb on + strand, within MMP_RS00800at 147.528 kb on - strand, within MMP_RS00800at 147.957 kb on - strand, within MMP_RS00800at 147.957 kb on - strand, within MMP_RS00800at 147.957 kb on - strand, within MMP_RS00800at 147.958 kb on + strand, within MMP_RS00800at 147.958 kb on + strand, within MMP_RS00800at 147.966 kb on - strand, within MMP_RS00800at 147.967 kb on + strand, within MMP_RS00800at 148.001 kb on - strand, within MMP_RS00800at 148.021 kb on + strand, within MMP_RS00800

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete Fluorophosphate 62.5 mM
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144,064 + -3.5
144,131 - -3.4
144,253 - -2.7
144,253 - -2.7
144,254 + -0.4
144,406 + +0.4
144,511 + -0.6
144,537 - +0.4
144,537 - -0.4
144,709 - +0.3
144,899 - +0.7
144,960 + +0.4
145,061 - -0.3
145,066 - +0.5
145,066 - +0.9
145,105 - -0.3
145,565 + MMP_RS00795 0.26 -0.1
145,800 - MMP_RS00795 0.38 -1.1
146,097 - MMP_RS00795 0.52 +0.3
146,135 + MMP_RS00795 0.54 -2.2
146,242 - MMP_RS00795 0.59 +0.3
146,516 + MMP_RS00795 0.73 +0.2
146,731 - MMP_RS00795 0.83 +0.3
146,732 + MMP_RS00795 0.83 -0.5
146,735 - MMP_RS00795 0.84 +0.2
146,736 + MMP_RS00795 0.84 +0.1
146,795 - MMP_RS00795 0.87 -4.0
146,905 - -0.6
146,923 - -0.2
146,952 - -0.5
146,992 - +0.8
147,035 + +0.7
147,098 - +0.2
147,176 - +1.0
147,396 - MMP_RS00800 0.27 -0.2
147,440 + MMP_RS00800 0.31 +1.4
147,440 + MMP_RS00800 0.31 +0.3
147,440 + MMP_RS00800 0.31 +0.4
147,507 + MMP_RS00800 0.37 -0.0
147,528 - MMP_RS00800 0.39 +1.0
147,957 - MMP_RS00800 0.77 +0.8
147,957 - MMP_RS00800 0.77 +0.3
147,957 - MMP_RS00800 0.77 +1.3
147,958 + MMP_RS00800 0.77 +0.5
147,958 + MMP_RS00800 0.77 +0.0
147,966 - MMP_RS00800 0.77 +0.3
147,967 + MMP_RS00800 0.78 -0.2
148,001 - MMP_RS00800 0.81 -0.2
148,021 + MMP_RS00800 0.82 +0.9

Or see this region's nucleotide sequence