Strain Fitness in Methanococcus maripaludis S2 around MMP_RS03815

Experiment: McCas_formate_complete mercury (II) chloride 0.227272727272727 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS03810 and MMP_RS03815 are separated by 7 nucleotidesMMP_RS03815 and MMP_RS03820 are separated by 125 nucleotidesMMP_RS03820 and MMP_RS03825 are separated by 9 nucleotidesMMP_RS03825 and MMP_RS03830 are separated by 22 nucleotides MMP_RS03810: MMP_RS03810 - excinuclease ABC subunit UvrC, at 719,441 to 721,024 _RS03810 MMP_RS03815: MMP_RS03815 - excinuclease ABC subunit UvrA, at 721,032 to 723,887 _RS03815 MMP_RS03820: MMP_RS03820 - EamA family transporter, at 724,013 to 724,432 _RS03820 MMP_RS03825: MMP_RS03825 - exodeoxyribonuclease VII small subunit, at 724,442 to 724,645 _RS03825 MMP_RS03830: MMP_RS03830 - exodeoxyribonuclease VII large subunit, at 724,668 to 725,891 _RS03830 Position (kb) 721 722 723 724Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 720.072 kb on + strand, within MMP_RS03810at 720.136 kb on - strand, within MMP_RS03810at 720.219 kb on - strand, within MMP_RS03810at 720.246 kb on + strand, within MMP_RS03810at 720.264 kb on + strand, within MMP_RS03810at 720.502 kb on + strand, within MMP_RS03810at 720.502 kb on + strand, within MMP_RS03810at 720.526 kb on - strand, within MMP_RS03810at 720.527 kb on + strand, within MMP_RS03810at 720.527 kb on + strand, within MMP_RS03810at 720.549 kb on + strand, within MMP_RS03810at 720.630 kb on - strand, within MMP_RS03810at 720.652 kb on - strand, within MMP_RS03810at 720.652 kb on - strand, within MMP_RS03810at 720.652 kb on - strand, within MMP_RS03810at 720.653 kb on + strand, within MMP_RS03810at 720.729 kb on - strand, within MMP_RS03810at 720.729 kb on - strand, within MMP_RS03810at 720.729 kb on - strand, within MMP_RS03810at 720.730 kb on + strand, within MMP_RS03810at 720.730 kb on + strand, within MMP_RS03810at 720.730 kb on + strand, within MMP_RS03810at 720.731 kb on - strand, within MMP_RS03810at 720.732 kb on + strand, within MMP_RS03810at 720.733 kb on - strand, within MMP_RS03810at 720.734 kb on + strand, within MMP_RS03810at 720.734 kb on + strand, within MMP_RS03810at 720.736 kb on + strand, within MMP_RS03810at 720.759 kb on + strand, within MMP_RS03810at 720.983 kb on + strandat 721.016 kb on + strandat 721.210 kb on + strandat 721.214 kb on - strandat 721.304 kb on + strandat 721.304 kb on + strandat 721.305 kb on - strandat 721.512 kb on + strand, within MMP_RS03815at 721.523 kb on - strand, within MMP_RS03815at 721.525 kb on - strand, within MMP_RS03815at 721.737 kb on + strand, within MMP_RS03815at 721.753 kb on - strand, within MMP_RS03815at 721.857 kb on + strand, within MMP_RS03815at 722.028 kb on - strand, within MMP_RS03815at 722.081 kb on - strand, within MMP_RS03815at 722.217 kb on - strand, within MMP_RS03815at 722.276 kb on - strand, within MMP_RS03815at 722.276 kb on - strand, within MMP_RS03815at 722.358 kb on - strand, within MMP_RS03815at 722.376 kb on - strand, within MMP_RS03815at 722.377 kb on + strand, within MMP_RS03815at 722.533 kb on - strand, within MMP_RS03815at 722.616 kb on + strand, within MMP_RS03815at 722.845 kb on - strand, within MMP_RS03815at 722.845 kb on - strand, within MMP_RS03815at 723.013 kb on + strand, within MMP_RS03815at 723.177 kb on + strand, within MMP_RS03815at 723.515 kb on - strand, within MMP_RS03815at 723.680 kb on - strandat 723.710 kb on + strandat 723.730 kb on - strandat 723.730 kb on - strandat 723.815 kb on - strandat 723.870 kb on - strandat 723.870 kb on - strandat 723.891 kb on - strandat 723.903 kb on - strandat 723.921 kb on - strandat 723.922 kb on + strandat 723.930 kb on + strandat 723.935 kb on - strandat 723.946 kb on + strandat 723.985 kb on - strandat 724.014 kb on - strandat 724.094 kb on - strand, within MMP_RS03820at 724.110 kb on + strand, within MMP_RS03820at 724.223 kb on - strand, within MMP_RS03820at 724.228 kb on + strand, within MMP_RS03820at 724.262 kb on - strand, within MMP_RS03820at 724.263 kb on + strand, within MMP_RS03820at 724.280 kb on - strand, within MMP_RS03820at 724.288 kb on - strand, within MMP_RS03820at 724.289 kb on + strand, within MMP_RS03820at 724.289 kb on + strand, within MMP_RS03820at 724.323 kb on - strand, within MMP_RS03820at 724.333 kb on - strand, within MMP_RS03820at 724.334 kb on + strand, within MMP_RS03820at 724.392 kb on + strandat 724.682 kb on - strandat 724.686 kb on + strandat 724.686 kb on + strandat 724.686 kb on + strandat 724.715 kb on - strandat 724.758 kb on - strandat 724.759 kb on + strandat 724.806 kb on - strand, within MMP_RS03830at 724.820 kb on - strand, within MMP_RS03830

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete mercury (II) chloride 0.227272727272727 mM
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720,072 + MMP_RS03810 0.40 +0.6
720,136 - MMP_RS03810 0.44 -0.1
720,219 - MMP_RS03810 0.49 -0.7
720,246 + MMP_RS03810 0.51 +0.8
720,264 + MMP_RS03810 0.52 +0.5
720,502 + MMP_RS03810 0.67 +0.7
720,502 + MMP_RS03810 0.67 +0.1
720,526 - MMP_RS03810 0.68 +1.2
720,527 + MMP_RS03810 0.69 -0.0
720,527 + MMP_RS03810 0.69 -0.8
720,549 + MMP_RS03810 0.70 +0.5
720,630 - MMP_RS03810 0.75 +0.2
720,652 - MMP_RS03810 0.76 -0.2
720,652 - MMP_RS03810 0.76 +0.2
720,652 - MMP_RS03810 0.76 -0.3
720,653 + MMP_RS03810 0.77 -0.2
720,729 - MMP_RS03810 0.81 +0.3
720,729 - MMP_RS03810 0.81 +1.6
720,729 - MMP_RS03810 0.81 +0.5
720,730 + MMP_RS03810 0.81 +0.5
720,730 + MMP_RS03810 0.81 +0.6
720,730 + MMP_RS03810 0.81 -1.4
720,731 - MMP_RS03810 0.81 -0.8
720,732 + MMP_RS03810 0.82 -2.2
720,733 - MMP_RS03810 0.82 +0.2
720,734 + MMP_RS03810 0.82 -0.1
720,734 + MMP_RS03810 0.82 -0.7
720,736 + MMP_RS03810 0.82 +0.7
720,759 + MMP_RS03810 0.83 +0.5
720,983 + -1.2
721,016 + +0.7
721,210 + +0.5
721,214 - -0.2
721,304 + +0.5
721,304 + +0.3
721,305 - -0.6
721,512 + MMP_RS03815 0.17 +0.3
721,523 - MMP_RS03815 0.17 -0.3
721,525 - MMP_RS03815 0.17 -2.8
721,737 + MMP_RS03815 0.25 -5.9
721,753 - MMP_RS03815 0.25 +1.1
721,857 + MMP_RS03815 0.29 -0.1
722,028 - MMP_RS03815 0.35 +0.9
722,081 - MMP_RS03815 0.37 -0.2
722,217 - MMP_RS03815 0.41 +0.3
722,276 - MMP_RS03815 0.44 -0.0
722,276 - MMP_RS03815 0.44 +0.1
722,358 - MMP_RS03815 0.46 -0.4
722,376 - MMP_RS03815 0.47 -1.3
722,377 + MMP_RS03815 0.47 -1.0
722,533 - MMP_RS03815 0.53 +0.4
722,616 + MMP_RS03815 0.55 -4.2
722,845 - MMP_RS03815 0.63 -2.1
722,845 - MMP_RS03815 0.63 +1.2
723,013 + MMP_RS03815 0.69 -0.1
723,177 + MMP_RS03815 0.75 -2.3
723,515 - MMP_RS03815 0.87 -1.0
723,680 - +1.0
723,710 + -1.9
723,730 - -1.2
723,730 - +0.2
723,815 - +1.1
723,870 - +0.5
723,870 - +0.6
723,891 - +0.6
723,903 - +1.4
723,921 - +0.5
723,922 + +1.3
723,930 + -0.7
723,935 - +0.2
723,946 + +0.3
723,985 - +0.4
724,014 - +0.0
724,094 - MMP_RS03820 0.19 +0.8
724,110 + MMP_RS03820 0.23 +0.1
724,223 - MMP_RS03820 0.50 +0.4
724,228 + MMP_RS03820 0.51 +0.8
724,262 - MMP_RS03820 0.59 +0.8
724,263 + MMP_RS03820 0.60 +0.4
724,280 - MMP_RS03820 0.64 +0.8
724,288 - MMP_RS03820 0.65 +0.8
724,289 + MMP_RS03820 0.66 +0.3
724,289 + MMP_RS03820 0.66 -2.3
724,323 - MMP_RS03820 0.74 -0.4
724,333 - MMP_RS03820 0.76 -0.2
724,334 + MMP_RS03820 0.76 +0.6
724,392 + +0.7
724,682 - -0.8
724,686 + +1.7
724,686 + -2.2
724,686 + +0.7
724,715 - +0.9
724,758 - -0.2
724,759 + +0.5
724,806 - MMP_RS03830 0.11 +0.1
724,820 - MMP_RS03830 0.12 -4.4

Or see this region's nucleotide sequence