Strain Fitness in Methanococcus maripaludis S2 around MMP_RS02840

Experiment: McCas_formate_complete Chloride 250 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS02830 and MMP_RS02835 are separated by 148 nucleotidesMMP_RS02835 and MMP_RS02840 are separated by 23 nucleotidesMMP_RS02840 and MMP_RS02845 are separated by 94 nucleotidesMMP_RS02845 and MMP_RS02850 are separated by 164 nucleotides MMP_RS02830: MMP_RS02830 - DUF432 domain-containing protein, at 540,277 to 540,915 _RS02830 MMP_RS02835: MMP_RS02835 - CGGC domain-containing protein, at 541,064 to 541,477 _RS02835 MMP_RS02840: MMP_RS02840 - DUF123 domain-containing protein, at 541,501 to 542,571 _RS02840 MMP_RS02845: MMP_RS02845 - hypothetical protein, at 542,666 to 543,277 _RS02845 MMP_RS02850: MMP_RS02850 - hypothetical protein, at 543,442 to 543,732 _RS02850 Position (kb) 541 542 543Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 540.538 kb on + strand, within MMP_RS02830at 540.541 kb on - strand, within MMP_RS02830at 540.542 kb on + strand, within MMP_RS02830at 540.574 kb on - strand, within MMP_RS02830at 540.575 kb on + strand, within MMP_RS02830at 540.575 kb on + strand, within MMP_RS02830at 540.629 kb on + strand, within MMP_RS02830at 540.649 kb on - strand, within MMP_RS02830at 540.678 kb on + strand, within MMP_RS02830at 540.827 kb on - strand, within MMP_RS02830at 540.915 kb on - strandat 540.919 kb on + strandat 540.921 kb on - strandat 540.922 kb on + strandat 540.923 kb on - strandat 540.923 kb on - strandat 540.923 kb on - strandat 540.923 kb on - strandat 540.923 kb on - strandat 540.925 kb on - strandat 540.925 kb on - strandat 540.925 kb on - strandat 540.925 kb on - strandat 540.926 kb on + strandat 540.972 kb on + strandat 541.175 kb on + strand, within MMP_RS02835at 541.222 kb on - strand, within MMP_RS02835at 541.238 kb on - strand, within MMP_RS02835at 541.350 kb on - strand, within MMP_RS02835at 541.454 kb on - strandat 541.456 kb on - strandat 541.456 kb on - strandat 541.457 kb on + strandat 541.460 kb on - strandat 541.519 kb on - strandat 541.654 kb on - strand, within MMP_RS02840at 541.835 kb on - strand, within MMP_RS02840at 541.836 kb on + strand, within MMP_RS02840at 542.213 kb on + strand, within MMP_RS02840at 542.245 kb on + strand, within MMP_RS02840at 542.247 kb on + strand, within MMP_RS02840at 542.250 kb on - strand, within MMP_RS02840at 542.293 kb on + strand, within MMP_RS02840at 542.607 kb on - strandat 542.610 kb on - strandat 542.739 kb on - strand, within MMP_RS02845at 542.740 kb on + strand, within MMP_RS02845at 542.792 kb on - strand, within MMP_RS02845at 542.795 kb on + strand, within MMP_RS02845at 542.806 kb on - strand, within MMP_RS02845at 542.807 kb on + strand, within MMP_RS02845at 542.808 kb on - strand, within MMP_RS02845at 542.808 kb on - strand, within MMP_RS02845at 542.809 kb on + strand, within MMP_RS02845at 542.809 kb on + strand, within MMP_RS02845at 542.809 kb on + strand, within MMP_RS02845at 542.809 kb on + strand, within MMP_RS02845at 542.815 kb on + strand, within MMP_RS02845at 542.834 kb on + strand, within MMP_RS02845at 542.869 kb on - strand, within MMP_RS02845at 542.870 kb on + strand, within MMP_RS02845at 542.870 kb on + strand, within MMP_RS02845at 543.047 kb on + strand, within MMP_RS02845at 543.057 kb on - strand, within MMP_RS02845at 543.068 kb on - strand, within MMP_RS02845at 543.119 kb on + strand, within MMP_RS02845at 543.175 kb on + strand, within MMP_RS02845at 543.179 kb on - strand, within MMP_RS02845at 543.193 kb on - strand, within MMP_RS02845at 543.193 kb on - strand, within MMP_RS02845at 543.196 kb on + strand, within MMP_RS02845at 543.196 kb on + strand, within MMP_RS02845at 543.238 kb on - strandat 543.241 kb on - strandat 543.242 kb on + strandat 543.242 kb on + strandat 543.243 kb on - strandat 543.276 kb on + strandat 543.300 kb on - strandat 543.321 kb on + strandat 543.331 kb on + strandat 543.337 kb on + strandat 543.361 kb on + strandat 543.364 kb on - strandat 543.367 kb on - strandat 543.367 kb on - strandat 543.369 kb on - strandat 543.369 kb on - strandat 543.369 kb on - strandat 543.369 kb on - strandat 543.369 kb on - strandat 543.369 kb on - strandat 543.369 kb on - strandat 543.370 kb on + strandat 543.370 kb on + strandat 543.370 kb on + strandat 543.370 kb on + strandat 543.370 kb on + strandat 543.371 kb on - strandat 543.371 kb on - strandat 543.372 kb on + strandat 543.373 kb on - strandat 543.373 kb on - strandat 543.373 kb on - strandat 543.373 kb on - strandat 543.373 kb on - strandat 543.373 kb on - strandat 543.374 kb on + strandat 543.374 kb on + strandat 543.374 kb on + strandat 543.374 kb on + strandat 543.401 kb on - strandat 543.403 kb on - strandat 543.404 kb on + strandat 543.439 kb on + strandat 543.492 kb on - strand, within MMP_RS02850at 543.492 kb on - strand, within MMP_RS02850at 543.492 kb on - strand, within MMP_RS02850at 543.493 kb on + strand, within MMP_RS02850at 543.493 kb on + strand, within MMP_RS02850at 543.494 kb on - strand, within MMP_RS02850at 543.495 kb on + strand, within MMP_RS02850at 543.547 kb on + strand, within MMP_RS02850at 543.547 kb on + strand, within MMP_RS02850at 543.548 kb on - strand, within MMP_RS02850at 543.548 kb on - strand, within MMP_RS02850at 543.548 kb on - strand, within MMP_RS02850at 543.549 kb on + strand, within MMP_RS02850at 543.549 kb on + strand, within MMP_RS02850at 543.549 kb on + strand, within MMP_RS02850at 543.550 kb on - strand, within MMP_RS02850at 543.551 kb on + strand, within MMP_RS02850at 543.551 kb on + strand, within MMP_RS02850at 543.551 kb on + strand, within MMP_RS02850at 543.551 kb on + strand, within MMP_RS02850at 543.551 kb on + strand, within MMP_RS02850

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete Chloride 250 mM
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540,538 + MMP_RS02830 0.41 +0.7
540,541 - MMP_RS02830 0.41 +0.2
540,542 + MMP_RS02830 0.41 -0.2
540,574 - MMP_RS02830 0.46 +0.9
540,575 + MMP_RS02830 0.47 +1.0
540,575 + MMP_RS02830 0.47 +0.8
540,629 + MMP_RS02830 0.55 +0.6
540,649 - MMP_RS02830 0.58 -0.3
540,678 + MMP_RS02830 0.63 +1.5
540,827 - MMP_RS02830 0.86 +0.5
540,915 - +0.1
540,919 + -3.2
540,921 - -0.5
540,922 + +1.0
540,923 - +1.3
540,923 - +0.8
540,923 - -4.9
540,923 - +0.8
540,923 - -0.7
540,925 - -4.9
540,925 - +1.0
540,925 - -2.9
540,925 - -0.4
540,926 + +1.8
540,972 + +0.5
541,175 + MMP_RS02835 0.27 +1.2
541,222 - MMP_RS02835 0.38 -1.1
541,238 - MMP_RS02835 0.42 -1.0
541,350 - MMP_RS02835 0.69 -2.0
541,454 - -2.9
541,456 - -3.8
541,456 - -3.5
541,457 + +1.1
541,460 - -4.2
541,519 - +0.6
541,654 - MMP_RS02840 0.14 +0.8
541,835 - MMP_RS02840 0.31 -1.9
541,836 + MMP_RS02840 0.31 -0.6
542,213 + MMP_RS02840 0.66 -0.8
542,245 + MMP_RS02840 0.69 +1.3
542,247 + MMP_RS02840 0.70 -0.4
542,250 - MMP_RS02840 0.70 -0.2
542,293 + MMP_RS02840 0.74 -2.1
542,607 - +1.0
542,610 - +0.2
542,739 - MMP_RS02845 0.12 -0.9
542,740 + MMP_RS02845 0.12 +1.1
542,792 - MMP_RS02845 0.21 -0.0
542,795 + MMP_RS02845 0.21 -4.1
542,806 - MMP_RS02845 0.23 -0.3
542,807 + MMP_RS02845 0.23 +0.7
542,808 - MMP_RS02845 0.23 -0.9
542,808 - MMP_RS02845 0.23 -0.5
542,809 + MMP_RS02845 0.23 -4.4
542,809 + MMP_RS02845 0.23 -0.0
542,809 + MMP_RS02845 0.23 -0.3
542,809 + MMP_RS02845 0.23 +1.7
542,815 + MMP_RS02845 0.24 -4.7
542,834 + MMP_RS02845 0.27 +1.5
542,869 - MMP_RS02845 0.33 -3.4
542,870 + MMP_RS02845 0.33 +0.4
542,870 + MMP_RS02845 0.33 +1.3
543,047 + MMP_RS02845 0.62 -4.8
543,057 - MMP_RS02845 0.64 +0.8
543,068 - MMP_RS02845 0.66 +0.4
543,119 + MMP_RS02845 0.74 -0.4
543,175 + MMP_RS02845 0.83 +0.5
543,179 - MMP_RS02845 0.84 -4.6
543,193 - MMP_RS02845 0.86 -0.4
543,193 - MMP_RS02845 0.86 -0.5
543,196 + MMP_RS02845 0.87 -0.5
543,196 + MMP_RS02845 0.87 +1.4
543,238 - +0.3
543,241 - -3.3
543,242 + -2.7
543,242 + +0.4
543,243 - +0.2
543,276 + +1.0
543,300 - -1.1
543,321 + +0.6
543,331 + -0.1
543,337 + +1.9
543,361 + -1.8
543,364 - -2.7
543,367 - -4.7
543,367 - +0.7
543,369 - +1.6
543,369 - +0.7
543,369 - -0.1
543,369 - -3.4
543,369 - +0.2
543,369 - -0.4
543,369 - +1.3
543,370 + -1.5
543,370 + +0.9
543,370 + +0.1
543,370 + +1.7
543,370 + +1.0
543,371 - -0.1
543,371 - -1.8
543,372 + -0.6
543,373 - -0.2
543,373 - +0.7
543,373 - +0.4
543,373 - -3.5
543,373 - +0.2
543,373 - -0.8
543,374 + +1.3
543,374 + +0.5
543,374 + -4.4
543,374 + -0.2
543,401 - -1.0
543,403 - +0.2
543,404 + -2.9
543,439 + -1.2
543,492 - MMP_RS02850 0.17 -2.0
543,492 - MMP_RS02850 0.17 +0.2
543,492 - MMP_RS02850 0.17 +0.9
543,493 + MMP_RS02850 0.18 -1.2
543,493 + MMP_RS02850 0.18 -0.0
543,494 - MMP_RS02850 0.18 -0.6
543,495 + MMP_RS02850 0.18 -1.7
543,547 + MMP_RS02850 0.36 +0.1
543,547 + MMP_RS02850 0.36 -4.9
543,548 - MMP_RS02850 0.36 -0.3
543,548 - MMP_RS02850 0.36 +0.6
543,548 - MMP_RS02850 0.36 +0.7
543,549 + MMP_RS02850 0.37 +1.5
543,549 + MMP_RS02850 0.37 +0.3
543,549 + MMP_RS02850 0.37 +0.6
543,550 - MMP_RS02850 0.37 +0.4
543,551 + MMP_RS02850 0.37 +1.2
543,551 + MMP_RS02850 0.37 -0.0
543,551 + MMP_RS02850 0.37 +0.5
543,551 + MMP_RS02850 0.37 +0.6
543,551 + MMP_RS02850 0.37 +0.5

Or see this region's nucleotide sequence