Strain Fitness in Methanococcus maripaludis S2 around MMP_RS01570

Experiment: McCas_formate_complete Chloride 250 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS01565 and MMP_RS01570 overlap by 4 nucleotidesMMP_RS01570 and MMP_RS01575 are separated by 11 nucleotides MMP_RS01565: MMP_RS01565 - AIR synthase related protein, at 291,659 to 293,002 _RS01565 MMP_RS01570: MMP_RS01570 - hypothetical protein, at 292,999 to 293,184 _RS01570 MMP_RS01575: MMP_RS01575 - aldolase, at 293,196 to 294,122 _RS01575 Position (kb) 292 293 294Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 292.597 kb on - strandat 292.620 kb on - strandat 293.157 kb on - strand, within MMP_RS01570at 293.187 kb on - strandat 293.198 kb on + strandat 293.217 kb on - strandat 293.219 kb on - strandat 293.220 kb on + strandat 293.413 kb on + strand, within MMP_RS01575at 293.420 kb on - strand, within MMP_RS01575at 293.438 kb on - strand, within MMP_RS01575at 293.487 kb on - strand, within MMP_RS01575at 293.682 kb on - strand, within MMP_RS01575at 293.682 kb on - strand, within MMP_RS01575at 293.838 kb on + strand, within MMP_RS01575at 294.029 kb on - strand, within MMP_RS01575at 294.137 kb on - strandat 294.145 kb on + strandat 294.152 kb on - strandat 294.153 kb on + strandat 294.164 kb on - strandat 294.164 kb on - strandat 294.172 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete Chloride 250 mM
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292,597 - -3.3
292,620 - -0.4
293,157 - MMP_RS01570 0.85 -0.7
293,187 - -0.7
293,198 + -0.5
293,217 - +0.8
293,219 - -1.2
293,220 + -0.1
293,413 + MMP_RS01575 0.23 -4.9
293,420 - MMP_RS01575 0.24 -4.4
293,438 - MMP_RS01575 0.26 -5.3
293,487 - MMP_RS01575 0.31 -0.1
293,682 - MMP_RS01575 0.52 -0.4
293,682 - MMP_RS01575 0.52 +0.4
293,838 + MMP_RS01575 0.69 +0.2
294,029 - MMP_RS01575 0.90 +0.2
294,137 - -2.9
294,145 + -4.3
294,152 - -1.4
294,153 + -4.8
294,164 - +3.7
294,164 - -0.0
294,172 - -0.3

Or see this region's nucleotide sequence