Strain Fitness in Methanococcus maripaludis S2 around MMP_RS07950

Experiment: McCas_formate_complete arsenate 0.416666666666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS07940 and MMP_RS07945 are separated by 40 nucleotidesMMP_RS07945 and MMP_RS07950 are separated by 38 nucleotidesMMP_RS07950 and MMP_RS07955 are separated by 86 nucleotidesMMP_RS07955 and MMP_RS07960 are separated by 77 nucleotides MMP_RS07940: MMP_RS07940 - 50S ribosomal protein L23, at 1,500,691 to 1,500,951 _RS07940 MMP_RS07945: MMP_RS07945 - 50S ribosomal protein L2, at 1,500,992 to 1,501,714 _RS07945 MMP_RS07950: MMP_RS07950 - 30S ribosomal protein S19, at 1,501,753 to 1,502,238 _RS07950 MMP_RS07955: MMP_RS07955 - FumA C-terminus/TtdB family hydratase beta subunit, at 1,502,325 to 1,502,897 _RS07955 MMP_RS07960: MMP_RS07960 - sugar phosphate isomerase/epimerase, at 1,502,975 to 1,503,781 _RS07960 Position (kb) 1501 1502 1503Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 1502.379 kb on + strandat 1502.385 kb on - strand, within MMP_RS07955at 1502.386 kb on + strand, within MMP_RS07955at 1502.386 kb on + strand, within MMP_RS07955at 1502.390 kb on - strand, within MMP_RS07955at 1502.483 kb on + strand, within MMP_RS07955at 1502.622 kb on + strand, within MMP_RS07955at 1502.635 kb on + strand, within MMP_RS07955at 1502.738 kb on + strand, within MMP_RS07955at 1502.761 kb on + strand, within MMP_RS07955at 1502.793 kb on + strand, within MMP_RS07955at 1502.793 kb on + strand, within MMP_RS07955at 1502.836 kb on + strand, within MMP_RS07955at 1502.925 kb on - strandat 1502.926 kb on + strandat 1502.946 kb on + strandat 1502.951 kb on - strandat 1502.951 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete arsenate 0.416666666666667 mM
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1,502,379 + -0.2
1,502,385 - MMP_RS07955 0.10 +2.9
1,502,386 + MMP_RS07955 0.11 +2.2
1,502,386 + MMP_RS07955 0.11 +3.2
1,502,390 - MMP_RS07955 0.11 -2.6
1,502,483 + MMP_RS07955 0.28 +3.6
1,502,622 + MMP_RS07955 0.52 +3.8
1,502,635 + MMP_RS07955 0.54 +1.9
1,502,738 + MMP_RS07955 0.72 +2.2
1,502,761 + MMP_RS07955 0.76 +1.8
1,502,793 + MMP_RS07955 0.82 +0.4
1,502,793 + MMP_RS07955 0.82 +2.6
1,502,836 + MMP_RS07955 0.89 +1.4
1,502,925 - +1.0
1,502,926 + +5.0
1,502,946 + +1.6
1,502,951 - -1.0
1,502,951 - +2.1

Or see this region's nucleotide sequence