Strain Fitness in Methanococcus maripaludis S2 around MMP_RS01570

Experiment: McCas_formate_complete arsenate 0.416666666666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS01565 and MMP_RS01570 overlap by 4 nucleotidesMMP_RS01570 and MMP_RS01575 are separated by 11 nucleotides MMP_RS01565: MMP_RS01565 - AIR synthase related protein, at 291,659 to 293,002 _RS01565 MMP_RS01570: MMP_RS01570 - hypothetical protein, at 292,999 to 293,184 _RS01570 MMP_RS01575: MMP_RS01575 - aldolase, at 293,196 to 294,122 _RS01575 Position (kb) 292 293 294Strain fitness (log2 ratio) -2 -1 0 1 2at 292.597 kb on - strandat 292.620 kb on - strandat 293.157 kb on - strand, within MMP_RS01570at 293.187 kb on - strandat 293.198 kb on + strandat 293.217 kb on - strandat 293.219 kb on - strandat 293.220 kb on + strandat 293.413 kb on + strand, within MMP_RS01575at 293.420 kb on - strand, within MMP_RS01575at 293.438 kb on - strand, within MMP_RS01575at 293.487 kb on - strand, within MMP_RS01575at 293.682 kb on - strand, within MMP_RS01575at 293.682 kb on - strand, within MMP_RS01575at 293.838 kb on + strand, within MMP_RS01575at 294.029 kb on - strand, within MMP_RS01575at 294.137 kb on - strandat 294.145 kb on + strandat 294.152 kb on - strandat 294.153 kb on + strandat 294.164 kb on - strandat 294.164 kb on - strandat 294.172 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete arsenate 0.416666666666667 mM
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292,597 - -0.7
292,620 - -1.1
293,157 - MMP_RS01570 0.85 -0.7
293,187 - -1.2
293,198 + -0.4
293,217 - -1.6
293,219 - +0.8
293,220 + -0.3
293,413 + MMP_RS01575 0.23 +0.5
293,420 - MMP_RS01575 0.24 -2.4
293,438 - MMP_RS01575 0.26 +0.0
293,487 - MMP_RS01575 0.31 +2.0
293,682 - MMP_RS01575 0.52 -0.3
293,682 - MMP_RS01575 0.52 +0.0
293,838 + MMP_RS01575 0.69 -1.7
294,029 - MMP_RS01575 0.90 -1.6
294,137 - +0.2
294,145 + -2.7
294,152 - -0.5
294,153 + -1.0
294,164 - +0.0
294,164 - -0.3
294,172 - -0.3

Or see this region's nucleotide sequence