Experiment: McCas_formate_complete sodium nitrite 0.125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01150 and MMP_RS01155 are separated by 15 nucleotides MMP_RS01155 and MMP_RS01160 are separated by 137 nucleotides MMP_RS01160 and MMP_RS01165 are separated by 95 nucleotides MMP_RS01165 and MMP_RS01170 are separated by 1 nucleotides
MMP_RS01150: MMP_RS01150 - aldo/keto reductase, at 215,314 to 216,543
_RS01150
MMP_RS01155: MMP_RS01155 - XRE family transcriptional regulator, at 216,559 to 217,113
_RS01155
MMP_RS01160: MMP_RS01160 - DMT family transporter, at 217,251 to 218,150
_RS01160
MMP_RS01165: MMP_RS01165 - DUF434 domain-containing protein, at 218,246 to 218,914
_RS01165
MMP_RS01170: MMP_RS01170 - glycine--tRNA ligase, at 218,916 to 220,640
_RS01170
Position (kb) 217
218
219 Strain fitness (log2 ratio) -1
0
1 at 216.331 kb on + strand, within MMP_RS01150 at 216.486 kb on + strand at 216.510 kb on - strand at 216.572 kb on - strand at 216.572 kb on - strand at 216.572 kb on - strand at 216.575 kb on + strand at 216.640 kb on + strand, within MMP_RS01155 at 216.739 kb on + strand, within MMP_RS01155 at 216.790 kb on - strand, within MMP_RS01155 at 216.824 kb on + strand, within MMP_RS01155 at 216.857 kb on - strand, within MMP_RS01155 at 216.924 kb on - strand, within MMP_RS01155 at 216.955 kb on - strand, within MMP_RS01155 at 217.120 kb on - strand at 217.136 kb on - strand at 217.140 kb on + strand at 217.163 kb on + strand at 217.171 kb on - strand at 217.180 kb on - strand at 217.180 kb on - strand at 217.181 kb on + strand at 217.230 kb on + strand at 217.232 kb on - strand at 217.233 kb on + strand at 217.238 kb on + strand at 217.379 kb on + strand, within MMP_RS01160 at 217.391 kb on + strand, within MMP_RS01160 at 217.408 kb on - strand, within MMP_RS01160 at 217.464 kb on - strand, within MMP_RS01160 at 217.464 kb on - strand, within MMP_RS01160 at 217.504 kb on + strand, within MMP_RS01160 at 217.860 kb on - strand, within MMP_RS01160 at 217.860 kb on - strand, within MMP_RS01160 at 217.860 kb on - strand, within MMP_RS01160 at 217.861 kb on + strand, within MMP_RS01160 at 217.929 kb on - strand, within MMP_RS01160 at 217.930 kb on + strand, within MMP_RS01160 at 217.930 kb on + strand, within MMP_RS01160 at 217.930 kb on + strand, within MMP_RS01160 at 217.930 kb on + strand, within MMP_RS01160 at 218.121 kb on - strand at 218.122 kb on + strand at 218.456 kb on + strand, within MMP_RS01165 at 218.734 kb on - strand, within MMP_RS01165 at 218.764 kb on - strand, within MMP_RS01165 at 218.806 kb on - strand, within MMP_RS01165 at 218.806 kb on - strand, within MMP_RS01165 at 218.830 kb on - strand, within MMP_RS01165 at 218.858 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete sodium nitrite 0.125 mM remove 216,331 + MMP_RS01150 0.83 +0.6 216,486 + +0.7 216,510 - +0.4 216,572 - -0.1 216,572 - +0.2 216,572 - +0.2 216,575 + +1.2 216,640 + MMP_RS01155 0.15 +0.1 216,739 + MMP_RS01155 0.32 +0.2 216,790 - MMP_RS01155 0.42 +0.8 216,824 + MMP_RS01155 0.48 +0.5 216,857 - MMP_RS01155 0.54 +0.6 216,924 - MMP_RS01155 0.66 -0.9 216,955 - MMP_RS01155 0.71 -0.6 217,120 - +0.3 217,136 - -0.1 217,140 + +0.1 217,163 + +0.5 217,171 - +0.3 217,180 - +1.1 217,180 - +0.0 217,181 + +0.2 217,230 + +0.5 217,232 - +0.4 217,233 + -0.2 217,238 + +0.3 217,379 + MMP_RS01160 0.14 -0.3 217,391 + MMP_RS01160 0.16 +0.6 217,408 - MMP_RS01160 0.17 +0.2 217,464 - MMP_RS01160 0.24 +0.6 217,464 - MMP_RS01160 0.24 +0.2 217,504 + MMP_RS01160 0.28 +0.1 217,860 - MMP_RS01160 0.68 +1.1 217,860 - MMP_RS01160 0.68 +0.3 217,860 - MMP_RS01160 0.68 +0.6 217,861 + MMP_RS01160 0.68 -0.4 217,929 - MMP_RS01160 0.75 +0.2 217,930 + MMP_RS01160 0.75 +0.7 217,930 + MMP_RS01160 0.75 +0.1 217,930 + MMP_RS01160 0.75 +0.4 217,930 + MMP_RS01160 0.75 -1.1 218,121 - -0.7 218,122 + +0.0 218,456 + MMP_RS01165 0.31 -0.4 218,734 - MMP_RS01165 0.73 +0.3 218,764 - MMP_RS01165 0.77 -1.3 218,806 - MMP_RS01165 0.84 +0.2 218,806 - MMP_RS01165 0.84 -1.0 218,830 - MMP_RS01165 0.87 +0.3 218,858 + +0.5
Or see this region's nucleotide sequence