Experiment: McCas_formate_complete Phenazine methosulfate 0.0333333333333333 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04655 and MMP_RS04660 are separated by 100 nucleotides MMP_RS04660 and MMP_RS04665 are separated by 92 nucleotides
MMP_RS04655: MMP_RS04655 - flippase, at 888,854 to 890,125
_RS04655
MMP_RS04660: MMP_RS04660 - bifunctional ornithine acetyltransferase/N-acetylglutamate synthase, at 890,226 to 891,452
_RS04660
MMP_RS04665: MMP_RS04665 - SBBP repeat-containing protein, at 891,545 to 894,625
_RS04665
Position (kb) 890
891
892 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 889.320 kb on - strand at 889.320 kb on - strand at 889.393 kb on - strand at 889.461 kb on + strand at 889.487 kb on + strand at 889.528 kb on - strand at 889.530 kb on - strand at 889.530 kb on - strand at 889.530 kb on - strand at 889.531 kb on + strand at 889.533 kb on + strand at 889.594 kb on - strand at 889.602 kb on - strand at 889.627 kb on - strand at 889.702 kb on + strand at 889.788 kb on - strand at 889.840 kb on - strand at 889.841 kb on + strand at 889.892 kb on + strand at 889.897 kb on - strand at 889.902 kb on + strand at 889.903 kb on - strand at 889.903 kb on - strand at 889.904 kb on + strand at 889.904 kb on + strand at 889.908 kb on - strand at 889.956 kb on + strand at 889.956 kb on + strand at 889.956 kb on + strand at 889.956 kb on + strand at 889.998 kb on + strand at 890.015 kb on + strand at 890.086 kb on - strand at 890.086 kb on - strand at 890.087 kb on + strand at 890.092 kb on - strand at 890.093 kb on + strand at 890.093 kb on + strand at 890.093 kb on + strand at 890.114 kb on - strand at 890.115 kb on + strand at 890.115 kb on + strand at 890.116 kb on - strand at 890.116 kb on - strand at 890.117 kb on + strand at 890.117 kb on + strand at 890.119 kb on - strand at 890.119 kb on - strand at 890.123 kb on - strand at 890.173 kb on + strand at 890.176 kb on - strand at 890.176 kb on - strand at 890.177 kb on + strand at 890.177 kb on + strand at 890.200 kb on - strand at 890.263 kb on - strand at 890.307 kb on - strand at 890.594 kb on - strand at 890.595 kb on + strand at 890.716 kb on - strand at 890.906 kb on - strand at 891.420 kb on - strand at 891.431 kb on + strand at 891.442 kb on + strand at 891.473 kb on - strand at 891.479 kb on - strand at 891.543 kb on - strand at 891.544 kb on + strand at 891.626 kb on - strand at 891.666 kb on - strand at 891.666 kb on - strand at 891.667 kb on + strand at 891.667 kb on + strand at 891.669 kb on + strand at 891.669 kb on + strand at 891.692 kb on + strand at 891.692 kb on + strand at 891.701 kb on + strand at 891.805 kb on - strand at 891.808 kb on + strand at 891.827 kb on - strand at 891.828 kb on + strand at 891.828 kb on + strand at 891.828 kb on + strand at 891.832 kb on - strand at 891.862 kb on - strand, within MMP_RS04665 at 891.863 kb on + strand, within MMP_RS04665 at 891.863 kb on + strand, within MMP_RS04665 at 891.917 kb on - strand, within MMP_RS04665 at 891.918 kb on + strand, within MMP_RS04665 at 891.922 kb on - strand, within MMP_RS04665 at 891.962 kb on + strand, within MMP_RS04665 at 891.962 kb on + strand, within MMP_RS04665 at 891.962 kb on + strand, within MMP_RS04665 at 891.988 kb on + strand, within MMP_RS04665 at 892.003 kb on - strand, within MMP_RS04665 at 892.031 kb on + strand, within MMP_RS04665 at 892.038 kb on + strand, within MMP_RS04665 at 892.039 kb on - strand, within MMP_RS04665 at 892.040 kb on + strand, within MMP_RS04665 at 892.043 kb on - strand, within MMP_RS04665 at 892.074 kb on + strand, within MMP_RS04665 at 892.094 kb on - strand, within MMP_RS04665 at 892.094 kb on - strand, within MMP_RS04665 at 892.137 kb on - strand, within MMP_RS04665 at 892.138 kb on + strand, within MMP_RS04665 at 892.138 kb on + strand, within MMP_RS04665 at 892.192 kb on - strand, within MMP_RS04665 at 892.252 kb on - strand, within MMP_RS04665 at 892.262 kb on + strand, within MMP_RS04665 at 892.262 kb on + strand, within MMP_RS04665 at 892.262 kb on + strand, within MMP_RS04665 at 892.282 kb on - strand, within MMP_RS04665 at 892.282 kb on - strand, within MMP_RS04665 at 892.288 kb on - strand, within MMP_RS04665 at 892.289 kb on + strand, within MMP_RS04665 at 892.289 kb on + strand, within MMP_RS04665 at 892.289 kb on + strand, within MMP_RS04665 at 892.292 kb on - strand, within MMP_RS04665 at 892.364 kb on - strand, within MMP_RS04665
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Phenazine methosulfate 0.0333333333333333 mM remove 889,320 - -0.7 889,320 - -2.0 889,393 - -1.7 889,461 + -0.9 889,487 + -2.2 889,528 - -1.1 889,530 - -0.9 889,530 - -2.7 889,530 - -1.1 889,531 + -2.1 889,533 + -2.8 889,594 - -1.8 889,602 - -3.4 889,627 - -1.1 889,702 + -3.8 889,788 - -0.3 889,840 - -1.5 889,841 + -0.4 889,892 + -0.1 889,897 - -0.7 889,902 + -1.5 889,903 - -2.0 889,903 - -1.5 889,904 + -3.0 889,904 + -1.3 889,908 - -1.9 889,956 + -1.9 889,956 + -1.8 889,956 + -1.8 889,956 + -2.3 889,998 + +0.0 890,015 + -1.9 890,086 - -2.1 890,086 - -0.9 890,087 + -0.9 890,092 - -0.9 890,093 + -0.9 890,093 + +0.8 890,093 + -0.5 890,114 - +0.6 890,115 + -0.9 890,115 + +0.1 890,116 - +0.4 890,116 - +1.1 890,117 + -1.1 890,117 + -0.4 890,119 - -1.8 890,119 - -0.3 890,123 - +0.5 890,173 + -0.8 890,176 - +0.3 890,176 - -0.7 890,177 + +1.4 890,177 + +1.9 890,200 - -0.5 890,263 - -3.0 890,307 - -2.3 890,594 - -0.9 890,595 + -2.7 890,716 - -1.3 890,906 - -2.4 891,420 - -0.8 891,431 + -0.4 891,442 + +1.4 891,473 - -0.5 891,479 - +0.6 891,543 - -1.2 891,544 + +1.2 891,626 - +0.6 891,666 - -0.1 891,666 - -1.0 891,667 + -0.1 891,667 + -1.9 891,669 + +0.4 891,669 + -0.9 891,692 + +0.2 891,692 + +0.7 891,701 + -1.3 891,805 - +0.2 891,808 + +1.3 891,827 - +0.6 891,828 + -1.5 891,828 + +0.4 891,828 + +0.0 891,832 - +0.4 891,862 - MMP_RS04665 0.10 -0.1 891,863 + MMP_RS04665 0.10 +1.3 891,863 + MMP_RS04665 0.10 +0.9 891,917 - MMP_RS04665 0.12 +0.2 891,918 + MMP_RS04665 0.12 -1.2 891,922 - MMP_RS04665 0.12 -0.1 891,962 + MMP_RS04665 0.14 +0.8 891,962 + MMP_RS04665 0.14 +0.4 891,962 + MMP_RS04665 0.14 +1.1 891,988 + MMP_RS04665 0.14 -1.4 892,003 - MMP_RS04665 0.15 -1.5 892,031 + MMP_RS04665 0.16 -0.8 892,038 + MMP_RS04665 0.16 -0.2 892,039 - MMP_RS04665 0.16 -0.8 892,040 + MMP_RS04665 0.16 +0.9 892,043 - MMP_RS04665 0.16 +1.1 892,074 + MMP_RS04665 0.17 +0.6 892,094 - MMP_RS04665 0.18 -1.6 892,094 - MMP_RS04665 0.18 -0.4 892,137 - MMP_RS04665 0.19 +0.2 892,138 + MMP_RS04665 0.19 +0.6 892,138 + MMP_RS04665 0.19 +1.0 892,192 - MMP_RS04665 0.21 -0.9 892,252 - MMP_RS04665 0.23 +0.8 892,262 + MMP_RS04665 0.23 -1.2 892,262 + MMP_RS04665 0.23 +0.7 892,262 + MMP_RS04665 0.23 -0.5 892,282 - MMP_RS04665 0.24 -0.7 892,282 - MMP_RS04665 0.24 -0.4 892,288 - MMP_RS04665 0.24 -1.8 892,289 + MMP_RS04665 0.24 +2.0 892,289 + MMP_RS04665 0.24 -0.3 892,289 + MMP_RS04665 0.24 -0.4 892,292 - MMP_RS04665 0.24 +0.2 892,364 - MMP_RS04665 0.27 -0.4
Or see this region's nucleotide sequence