Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS09360

Experiment: NLDM_defined low phosphorus; stationary

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NLDM_defined low phosphorus; stationary
2,047,911	-				+0.6
2,048,010	+				+0.5
2,048,010	+				+0.4
2,048,011	-				+1.0
2,048,011	-				-0.8
2,048,011	-				+0.4
2,048,011	-				+1.7
2,048,011	-				-1.1
2,048,011	-				-1.0
2,048,058	+				+1.6
2,048,058	+				-0.4
2,048,058	+				+2.4
2,048,058	+				+0.5
2,048,058	+				-0.7
2,048,059	-				-0.9
2,048,059	-				+0.1
2,048,059	-				-0.7
2,048,059	-				+0.2
2,048,059	-				-0.6
2,048,059	-				+1.6
2,048,094	-				-1.0
2,048,104	+				+0.4
2,048,104	+				+1.6
2,048,104	+				+1.3
2,048,104	+				+1.0
2,048,104	+				+0.5
2,048,104	+				-0.7
2,048,105	-				-0.4
2,048,105	-				-2.1
2,048,105	-				-1.7
2,048,105	-				-0.0
2,048,105	-				-0.4
2,048,105	-				-1.3
2,048,105	-				-0.1
2,048,105	-				+1.4
2,048,105	-				-0.2
2,048,105	-				+0.6
2,048,105	-				+0.6
2,048,151	+		LRK54_RS09350	0.16	-0.3
2,048,151	+		LRK54_RS09350	0.16	-1.4
2,048,152	-		LRK54_RS09350	0.16	+1.0
2,048,152	-		LRK54_RS09350	0.16	+2.1
2,048,168	+		LRK54_RS09350	0.19	+0.0
2,048,169	-		LRK54_RS09350	0.20	+0.6
2,048,184	+		LRK54_RS09350	0.22	-0.4
2,048,184	+		LRK54_RS09350	0.22	-0.7
2,048,184	+		LRK54_RS09350	0.22	+0.2
2,048,184	+		LRK54_RS09350	0.22	-0.4
2,048,185	-		LRK54_RS09350	0.22	+1.6
2,048,185	-		LRK54_RS09350	0.22	-0.3
2,048,185	-		LRK54_RS09350	0.22	+2.0
2,048,185	-		LRK54_RS09350	0.22	+0.8
2,048,185	-		LRK54_RS09350	0.22	-0.2
2,048,185	-		LRK54_RS09350	0.22	+0.8
2,048,185	-		LRK54_RS09350	0.22	+0.3
2,048,185	-		LRK54_RS09350	0.22	+0.8
2,048,185	-		LRK54_RS09350	0.22	-0.3
2,048,185	-		LRK54_RS09350	0.22	+0.8
2,048,203	+		LRK54_RS09350	0.26	-0.7
2,048,203	+		LRK54_RS09350	0.26	+1.2
2,048,318	-		LRK54_RS09350	0.47	+2.3
2,048,341	-		LRK54_RS09350	0.51	-1.6
2,048,365	-		LRK54_RS09350	0.55	-0.1
2,048,436	+		LRK54_RS09350	0.68	-2.3
2,048,436	+		LRK54_RS09350	0.68	+0.6
2,048,436	+		LRK54_RS09350	0.68	+0.0
2,048,436	+		LRK54_RS09350	0.68	+2.6
2,048,436	+		LRK54_RS09350	0.68	-0.2
2,048,437	-		LRK54_RS09350	0.68	-0.5
2,048,437	-		LRK54_RS09350	0.68	+1.0
2,048,437	-		LRK54_RS09350	0.68	-1.7
2,048,437	-		LRK54_RS09350	0.68	-0.1
2,048,437	-		LRK54_RS09350	0.68	+0.9
2,048,437	-		LRK54_RS09350	0.68	+2.0
2,048,449	+		LRK54_RS09350	0.70	-1.1
2,048,449	+		LRK54_RS09350	0.70	-0.6
2,048,449	+		LRK54_RS09350	0.70	+0.5
2,048,449	+		LRK54_RS09350	0.70	+0.0
2,048,449	+		LRK54_RS09350	0.70	-0.4
2,048,449	+		LRK54_RS09350	0.70	+0.2
2,048,449	+		LRK54_RS09350	0.70	-0.1
2,048,449	+		LRK54_RS09350	0.70	-2.0
2,048,449	+		LRK54_RS09350	0.70	-0.4
2,048,449	+		LRK54_RS09350	0.70	-0.6
2,048,449	+		LRK54_RS09350	0.70	+0.5
2,048,449	+		LRK54_RS09350	0.70	-0.7
2,048,449	+		LRK54_RS09350	0.70	+0.2
2,048,449	+		LRK54_RS09350	0.70	-0.2
2,048,450	-		LRK54_RS09350	0.70	-0.7
2,048,450	-		LRK54_RS09350	0.70	+1.6
2,048,450	-		LRK54_RS09350	0.70	+1.0
2,048,450	-		LRK54_RS09350	0.70	+0.6
2,048,450	-		LRK54_RS09350	0.70	+0.5
2,048,450	-		LRK54_RS09350	0.70	+0.3
2,048,450	-		LRK54_RS09350	0.70	+1.6
2,048,450	-		LRK54_RS09350	0.70	+1.1
2,048,450	-		LRK54_RS09350	0.70	-0.3
2,048,450	-		LRK54_RS09350	0.70	+0.0
2,048,450	-		LRK54_RS09350	0.70	+1.6
2,048,460	+		LRK54_RS09350	0.72	+0.6
2,048,460	+		LRK54_RS09350	0.72	-0.8
2,048,460	+		LRK54_RS09350	0.72	+0.6
2,048,461	-		LRK54_RS09350	0.72	-0.4
2,048,461	-		LRK54_RS09350	0.72	+0.5
2,048,461	-		LRK54_RS09350	0.72	+0.5
2,048,461	-		LRK54_RS09350	0.72	+0.5
2,048,461	-		LRK54_RS09350	0.72	-1.7
2,048,461	-		LRK54_RS09350	0.72	+1.1
2,048,461	-		LRK54_RS09350	0.72	-0.1
2,048,461	-		LRK54_RS09350	0.72	+1.9
2,048,578	-				-0.6
2,048,711	+		LRK54_RS09355	0.36	+0.2
2,048,830	+		LRK54_RS09355	0.78	-0.3
2,048,830	+		LRK54_RS09355	0.78	-0.9
2,048,830	+		LRK54_RS09355	0.78	-0.1
2,048,857	+		LRK54_RS09355	0.87	+0.6
2,048,857	+		LRK54_RS09355	0.87	+0.1
2,048,857	+		LRK54_RS09355	0.87	+0.7
2,048,857	+		LRK54_RS09355	0.87	-1.0
2,048,857	+		LRK54_RS09355	0.87	+0.4
2,048,857	+		LRK54_RS09355	0.87	-0.8
2,048,857	+		LRK54_RS09355	0.87	+0.3
2,048,857	+		LRK54_RS09355	0.87	-0.4
2,048,857	+		LRK54_RS09355	0.87	+0.5
2,048,857	+		LRK54_RS09355	0.87	-0.7
2,048,858	-		LRK54_RS09355	0.87	+1.3
2,048,858	-		LRK54_RS09355	0.87	-0.2
2,048,858	-		LRK54_RS09355	0.87	-1.5
2,048,858	-		LRK54_RS09355	0.87	+0.1
2,048,858	-		LRK54_RS09355	0.87	+0.0
2,048,858	-		LRK54_RS09355	0.87	-0.7
2,048,859	+		LRK54_RS09355	0.88	+0.1
2,048,859	+		LRK54_RS09355	0.88	+0.0
2,048,859	+		LRK54_RS09355	0.88	-0.2
2,048,859	+		LRK54_RS09355	0.88	-0.1
2,048,859	+		LRK54_RS09355	0.88	+0.1
2,048,859	+		LRK54_RS09355	0.88	+0.6
2,048,859	+		LRK54_RS09355	0.88	-0.3
2,048,859	+		LRK54_RS09355	0.88	-1.0
2,048,859	+		LRK54_RS09355	0.88	+0.6
2,048,860	-		LRK54_RS09355	0.88	+0.9
2,048,860	-		LRK54_RS09355	0.88	-0.4
2,048,860	-		LRK54_RS09355	0.88	+1.6
2,048,860	-		LRK54_RS09355	0.88	-0.4
2,048,860	-		LRK54_RS09355	0.88	-1.6
2,048,928	-				+3.4
2,048,976	+		LRK54_RS09360	0.11	-1.6
2,048,976	+		LRK54_RS09360	0.11	+0.2
2,049,202	-		LRK54_RS09360	0.46	+0.2
2,049,202	-		LRK54_RS09360	0.46	-1.9
2,049,234	+		LRK54_RS09360	0.51	-0.2
2,049,234	+		LRK54_RS09360	0.51	-0.4
2,049,234	+		LRK54_RS09360	0.51	-0.2
2,049,284	+		LRK54_RS09360	0.59	+0.7
2,049,285	-		LRK54_RS09360	0.59	-0.7
2,049,497	+				+0.4
2,049,497	+				-0.5
2,049,498	-				+0.0
2,049,498	-				+0.7
2,049,498	-				+0.9
2,049,498	-				-0.3
2,049,498	-				+0.8
2,049,539	+				+0.9
2,049,539	+				-0.3
2,049,539	+				-0.7
2,049,539	+				-0.4
2,049,539	+				-0.6
2,049,539	+				-0.7
2,049,539	+				+1.9
2,049,539	+				-2.1
2,049,539	+				+0.8
2,049,539	+				+2.1
2,049,539	+				-0.8
2,049,539	+				-0.1
2,049,539	+				+0.4
2,049,540	-				+0.2
2,049,540	-				-0.7
2,049,540	-				+0.4
2,049,540	-				-0.3
2,049,540	-				-0.0
2,049,540	-				+0.4
2,049,540	-				+0.0
2,049,540	-				-0.4
2,049,540	-				-1.2
2,049,540	-				+1.4
2,049,540	-				+1.6
2,049,695	+		LRK54_RS09365	0.13	-2.5
2,049,696	-		LRK54_RS09365	0.13	-0.4
2,049,714	+		LRK54_RS09365	0.15	+2.6
2,049,714	+		LRK54_RS09365	0.15	-0.5
2,049,714	+		LRK54_RS09365	0.15	-1.9
2,049,714	+		LRK54_RS09365	0.15	-1.1
2,049,715	-		LRK54_RS09365	0.15	-1.4
2,049,715	-		LRK54_RS09365	0.15	+1.6
2,049,781	+		LRK54_RS09365	0.21	+1.3
2,049,781	+		LRK54_RS09365	0.21	-0.4
2,049,781	+		LRK54_RS09365	0.21	+0.5
2,049,782	-		LRK54_RS09365	0.21	-1.0
2,049,860	+		LRK54_RS09365	0.29	+0.3
2,049,860	+		LRK54_RS09365	0.29	-1.7
2,049,860	+		LRK54_RS09365	0.29	-1.2
2,049,860	+		LRK54_RS09365	0.29	-0.9
2,049,861	-		LRK54_RS09365	0.29	+1.6
2,049,861	-		LRK54_RS09365	0.29	-1.2
2,049,880	+		LRK54_RS09365	0.31	+0.2
2,049,880	+		LRK54_RS09365	0.31	+0.9
2,049,880	+		LRK54_RS09365	0.31	-0.1
2,049,880	+		LRK54_RS09365	0.31	-0.8
2,049,880	+		LRK54_RS09365	0.31	-0.7
2,049,881	-		LRK54_RS09365	0.31	+0.0
2,049,881	-		LRK54_RS09365	0.31	-0.5
2,049,881	-		LRK54_RS09365	0.31	+1.6
2,049,883	+		LRK54_RS09365	0.32	-1.0
2,049,883	+		LRK54_RS09365	0.32	-0.4
2,049,883	+		LRK54_RS09365	0.32	+1.2
2,049,883	+		LRK54_RS09365	0.32	-0.4
2,049,883	+		LRK54_RS09365	0.32	-0.7
2,049,883	+		LRK54_RS09365	0.32	-0.2
2,049,883	+		LRK54_RS09365	0.32	-0.4
2,049,883	+		LRK54_RS09365	0.32	-0.6
2,049,883	+		LRK54_RS09365	0.32	+0.8
2,049,883	+		LRK54_RS09365	0.32	-1.4
2,049,883	+		LRK54_RS09365	0.32	+0.0
2,049,883	+		LRK54_RS09365	0.32	+2.6
2,049,883	+		LRK54_RS09365	0.32	-1.4
2,049,883	+		LRK54_RS09365	0.32	-0.5
2,049,883	+		LRK54_RS09365	0.32	-1.4
2,049,884	-		LRK54_RS09365	0.32	+0.3
2,049,884	-		LRK54_RS09365	0.32	-1.2
2,049,884	-		LRK54_RS09365	0.32	-2.4
2,049,884	-		LRK54_RS09365	0.32	-2.7
2,049,884	-		LRK54_RS09365	0.32	-0.7
2,049,884	-		LRK54_RS09365	0.32	+0.5
2,049,884	-		LRK54_RS09365	0.32	+0.6
2,049,884	-		LRK54_RS09365	0.32	-1.2
2,049,884	-		LRK54_RS09365	0.32	-0.7
2,049,884	-		LRK54_RS09365	0.32	+1.8
2,049,884	-		LRK54_RS09365	0.32	-0.4
2,049,884	-		LRK54_RS09365	0.32	+2.2
2,049,884	-		LRK54_RS09365	0.32	+0.0
2,049,884	-		LRK54_RS09365	0.32	+1.4
2,049,923	-		LRK54_RS09365	0.36	+1.1
2,049,948	+		LRK54_RS09365	0.38	-0.4
2,049,948	+		LRK54_RS09365	0.38	+1.1
2,049,948	+		LRK54_RS09365	0.38	+1.0
2,049,948	+		LRK54_RS09365	0.38	-1.2
2,049,948	+		LRK54_RS09365	0.38	+1.6
2,049,948	+		LRK54_RS09365	0.38	-0.9
2,049,948	+		LRK54_RS09365	0.38	+0.6
2,049,948	+		LRK54_RS09365	0.38	+1.6
2,049,948	+		LRK54_RS09365	0.38	-0.2
2,049,948	+		LRK54_RS09365	0.38	-0.7
2,049,948	+		LRK54_RS09365	0.38	+1.0
2,049,948	+		LRK54_RS09365	0.38	+0.6
2,049,948	+		LRK54_RS09365	0.38	+0.9
2,049,948	+		LRK54_RS09365	0.38	-0.7
2,049,948	+		LRK54_RS09365	0.38	+1.6
2,049,948	+		LRK54_RS09365	0.38	-0.4
2,049,948	+		LRK54_RS09365	0.38	-0.1
2,049,948	+		LRK54_RS09365	0.38	+1.1
2,049,949	-		LRK54_RS09365	0.38	-0.1
2,049,949	-		LRK54_RS09365	0.38	+0.6
2,049,949	-		LRK54_RS09365	0.38	+0.3
2,049,949	-		LRK54_RS09365	0.38	-0.3
2,049,949	-		LRK54_RS09365	0.38	+1.8
2,049,949	-		LRK54_RS09365	0.38	+0.6
2,049,949	-		LRK54_RS09365	0.38	-1.4
2,049,949	-		LRK54_RS09365	0.38	-0.1
2,049,949	-		LRK54_RS09365	0.38	+0.1
2,049,949	-		LRK54_RS09365	0.38	-0.2
2,050,400	-		LRK54_RS09365	0.83	-0.2
2,050,400	-		LRK54_RS09365	0.83	-1.3
2,050,451	+		LRK54_RS09365	0.88	+2.4
2,050,451	+		LRK54_RS09365	0.88	-0.6
2,050,451	+		LRK54_RS09365	0.88	-0.4
2,050,451	+		LRK54_RS09365	0.88	-1.0
2,050,451	+		LRK54_RS09365	0.88	-1.2
2,050,451	+		LRK54_RS09365	0.88	-1.2
2,050,452	-		LRK54_RS09365	0.88	-2.7
2,050,452	-		LRK54_RS09365	0.88	-1.3
2,050,452	-		LRK54_RS09365	0.88	+0.0
2,050,452	-		LRK54_RS09365	0.88	+0.2
2,050,504	+				-0.8
2,050,504	+				+1.6