Experiment: NLDM_defined low phosphorus; stationary
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS08530 and LRK54_RS08535 are separated by 88 nucleotides LRK54_RS08535 and LRK54_RS08540 are separated by 7 nucleotides LRK54_RS08540 and LRK54_RS08545 are separated by 94 nucleotides LRK54_RS08545 and LRK54_RS08550 are separated by 13 nucleotides
LRK54_RS08530: LRK54_RS08530 - glycosyl transferase family 9, at 1,860,461 to 1,861,552
_RS08530
LRK54_RS08535: LRK54_RS08535 - tyrosine recombinase XerC, at 1,861,641 to 1,862,525
_RS08535
LRK54_RS08540: LRK54_RS08540 - DUF484 family protein, at 1,862,533 to 1,863,225
_RS08540
LRK54_RS08545: LRK54_RS08545 - diaminopimelate epimerase, at 1,863,320 to 1,864,168
_RS08545
LRK54_RS08550: LRK54_RS08550 - lipoprotein, at 1,864,182 to 1,864,358
_RS08550
Position (kb) 1862
1863
1864 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1861.675 kb on + strand at 1861.675 kb on + strand at 1861.675 kb on + strand at 1861.675 kb on + strand at 1861.675 kb on + strand at 1861.675 kb on + strand at 1861.675 kb on + strand at 1861.675 kb on + strand at 1861.675 kb on + strand at 1861.675 kb on + strand at 1861.675 kb on + strand at 1861.676 kb on - strand at 1861.676 kb on - strand at 1861.676 kb on - strand at 1861.676 kb on - strand at 1861.676 kb on - strand at 1861.676 kb on - strand at 1861.676 kb on - strand at 1861.711 kb on + strand at 1861.711 kb on + strand at 1861.711 kb on + strand at 1861.711 kb on + strand at 1861.711 kb on + strand at 1861.711 kb on + strand at 1861.711 kb on + strand at 1861.711 kb on + strand at 1861.711 kb on + strand at 1861.711 kb on + strand at 1861.711 kb on + strand at 1861.711 kb on + strand at 1861.711 kb on + strand at 1861.711 kb on + strand at 1861.711 kb on + strand at 1861.711 kb on + strand at 1861.711 kb on + strand at 1861.711 kb on + strand at 1861.711 kb on + strand at 1861.711 kb on + strand at 1861.711 kb on + strand at 1861.711 kb on + strand at 1861.711 kb on + strand at 1861.711 kb on + strand at 1861.711 kb on + strand at 1861.711 kb on + strand at 1861.711 kb on + strand at 1861.711 kb on + strand at 1861.711 kb on + strand at 1861.711 kb on + strand at 1861.711 kb on + strand at 1861.711 kb on + strand at 1861.711 kb on + strand at 1861.712 kb on - strand at 1861.712 kb on - strand at 1861.712 kb on - strand at 1861.712 kb on - strand at 1861.712 kb on - strand at 1861.712 kb on - strand at 1861.712 kb on - strand at 1861.712 kb on - strand at 1861.712 kb on - strand at 1861.712 kb on - strand at 1861.712 kb on - strand at 1861.712 kb on - strand at 1861.712 kb on - strand at 1861.712 kb on - strand at 1861.712 kb on - strand at 1861.712 kb on - strand at 1861.712 kb on - strand at 1861.712 kb on - strand at 1861.712 kb on - strand at 1861.802 kb on + strand, within LRK54_RS08535 at 1861.802 kb on + strand, within LRK54_RS08535 at 1861.802 kb on + strand, within LRK54_RS08535 at 1861.802 kb on + strand, within LRK54_RS08535 at 1861.802 kb on + strand, within LRK54_RS08535 at 1861.802 kb on + strand, within LRK54_RS08535 at 1861.802 kb on + strand, within LRK54_RS08535 at 1861.802 kb on + strand, within LRK54_RS08535 at 1861.802 kb on + strand, within LRK54_RS08535 at 1861.802 kb on + strand, within LRK54_RS08535 at 1861.802 kb on + strand, within LRK54_RS08535 at 1861.802 kb on + strand, within LRK54_RS08535 at 1861.802 kb on + strand, within LRK54_RS08535 at 1861.802 kb on + strand, within LRK54_RS08535 at 1861.802 kb on + strand, within LRK54_RS08535 at 1861.802 kb on + strand, within LRK54_RS08535 at 1861.802 kb on + strand, within LRK54_RS08535 at 1861.802 kb on + strand, within LRK54_RS08535 at 1861.802 kb on + strand, within LRK54_RS08535 at 1861.803 kb on - strand, within LRK54_RS08535 at 1861.803 kb on - strand, within LRK54_RS08535 at 1861.803 kb on - strand, within LRK54_RS08535 at 1861.803 kb on - strand, within LRK54_RS08535 at 1861.803 kb on - strand, within LRK54_RS08535 at 1861.803 kb on - strand at 1861.803 kb on - strand, within LRK54_RS08535 at 1861.803 kb on - strand, within LRK54_RS08535 at 1861.803 kb on - strand, within LRK54_RS08535 at 1861.803 kb on - strand, within LRK54_RS08535 at 1861.803 kb on - strand, within LRK54_RS08535 at 1861.803 kb on - strand, within LRK54_RS08535 at 1861.803 kb on - strand, within LRK54_RS08535 at 1861.803 kb on - strand, within LRK54_RS08535 at 1861.803 kb on - strand, within LRK54_RS08535 at 1861.803 kb on - strand, within LRK54_RS08535 at 1861.803 kb on - strand, within LRK54_RS08535 at 1861.875 kb on + strand, within LRK54_RS08535 at 1861.875 kb on + strand, within LRK54_RS08535 at 1861.875 kb on + strand, within LRK54_RS08535 at 1861.875 kb on + strand, within LRK54_RS08535 at 1861.875 kb on + strand, within LRK54_RS08535 at 1861.875 kb on + strand, within LRK54_RS08535 at 1861.875 kb on + strand, within LRK54_RS08535 at 1861.875 kb on + strand, within LRK54_RS08535 at 1861.875 kb on + strand, within LRK54_RS08535 at 1861.875 kb on + strand, within LRK54_RS08535 at 1861.875 kb on + strand, within LRK54_RS08535 at 1861.875 kb on + strand, within LRK54_RS08535 at 1861.875 kb on + strand, within LRK54_RS08535 at 1861.875 kb on + strand, within LRK54_RS08535 at 1861.876 kb on - strand, within LRK54_RS08535 at 1861.876 kb on - strand, within LRK54_RS08535 at 1861.876 kb on - strand, within LRK54_RS08535 at 1861.876 kb on - strand, within LRK54_RS08535 at 1861.876 kb on - strand, within LRK54_RS08535 at 1861.876 kb on - strand, within LRK54_RS08535 at 1861.876 kb on - strand, within LRK54_RS08535 at 1861.876 kb on - strand, within LRK54_RS08535 at 1861.876 kb on - strand, within LRK54_RS08535 at 1861.876 kb on - strand, within LRK54_RS08535 at 1861.876 kb on - strand, within LRK54_RS08535 at 1861.876 kb on - strand, within LRK54_RS08535 at 1861.876 kb on - strand, within LRK54_RS08535 at 1861.876 kb on - strand, within LRK54_RS08535 at 1861.876 kb on - strand, within LRK54_RS08535 at 1861.876 kb on - strand, within LRK54_RS08535 at 1861.876 kb on - strand, within LRK54_RS08535 at 1862.101 kb on + strand, within LRK54_RS08535 at 1862.101 kb on + strand, within LRK54_RS08535 at 1862.101 kb on + strand, within LRK54_RS08535 at 1862.101 kb on + strand, within LRK54_RS08535 at 1862.101 kb on + strand, within LRK54_RS08535 at 1862.101 kb on + strand, within LRK54_RS08535 at 1862.101 kb on + strand, within LRK54_RS08535 at 1862.101 kb on + strand, within LRK54_RS08535 at 1862.101 kb on + strand, within LRK54_RS08535 at 1862.101 kb on + strand, within LRK54_RS08535 at 1862.102 kb on - strand, within LRK54_RS08535 at 1862.102 kb on - strand, within LRK54_RS08535 at 1862.102 kb on - strand, within LRK54_RS08535 at 1862.102 kb on - strand, within LRK54_RS08535 at 1862.102 kb on - strand, within LRK54_RS08535 at 1862.102 kb on - strand, within LRK54_RS08535 at 1862.102 kb on - strand, within LRK54_RS08535 at 1862.102 kb on - strand, within LRK54_RS08535 at 1862.102 kb on - strand, within LRK54_RS08535 at 1862.102 kb on - strand, within LRK54_RS08535 at 1862.102 kb on - strand, within LRK54_RS08535 at 1862.211 kb on + strand, within LRK54_RS08535 at 1862.211 kb on + strand, within LRK54_RS08535 at 1862.211 kb on + strand, within LRK54_RS08535 at 1862.211 kb on + strand, within LRK54_RS08535 at 1862.211 kb on + strand, within LRK54_RS08535 at 1862.211 kb on + strand, within LRK54_RS08535 at 1862.211 kb on + strand, within LRK54_RS08535 at 1862.211 kb on + strand, within LRK54_RS08535 at 1862.212 kb on - strand, within LRK54_RS08535 at 1862.212 kb on - strand, within LRK54_RS08535 at 1862.212 kb on - strand, within LRK54_RS08535 at 1862.212 kb on - strand, within LRK54_RS08535 at 1862.212 kb on - strand, within LRK54_RS08535 at 1862.541 kb on + strand at 1862.541 kb on + strand at 1862.541 kb on + strand at 1862.541 kb on + strand at 1862.541 kb on + strand at 1862.541 kb on + strand at 1862.542 kb on - strand at 1862.542 kb on - strand at 1862.542 kb on - strand at 1862.542 kb on - strand at 1862.542 kb on - strand at 1862.881 kb on - strand, within LRK54_RS08540 at 1863.068 kb on + strand, within LRK54_RS08540 at 1863.068 kb on + strand, within LRK54_RS08540 at 1863.068 kb on + strand, within LRK54_RS08540 at 1863.068 kb on + strand, within LRK54_RS08540 at 1863.068 kb on + strand, within LRK54_RS08540 at 1863.068 kb on + strand, within LRK54_RS08540 at 1863.068 kb on + strand, within LRK54_RS08540 at 1863.068 kb on + strand, within LRK54_RS08540 at 1863.068 kb on + strand, within LRK54_RS08540 at 1863.068 kb on + strand, within LRK54_RS08540 at 1863.068 kb on + strand, within LRK54_RS08540 at 1863.068 kb on + strand, within LRK54_RS08540 at 1863.068 kb on + strand, within LRK54_RS08540 at 1863.069 kb on - strand, within LRK54_RS08540 at 1863.069 kb on - strand, within LRK54_RS08540 at 1863.069 kb on - strand, within LRK54_RS08540 at 1863.069 kb on - strand, within LRK54_RS08540 at 1863.069 kb on - strand, within LRK54_RS08540 at 1863.069 kb on - strand, within LRK54_RS08540 at 1863.069 kb on - strand, within LRK54_RS08540 at 1863.069 kb on - strand, within LRK54_RS08540 at 1863.069 kb on - strand, within LRK54_RS08540 at 1863.069 kb on - strand, within LRK54_RS08540 at 1863.069 kb on - strand, within LRK54_RS08540 at 1863.069 kb on - strand, within LRK54_RS08540 at 1863.141 kb on - strand, within LRK54_RS08540 at 1863.173 kb on + strand at 1863.173 kb on + strand at 1863.174 kb on - strand at 1863.174 kb on - strand at 1863.174 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined low phosphorus; stationary remove 1,861,675 + -0.1 1,861,675 + +0.1 1,861,675 + -0.2 1,861,675 + -1.2 1,861,675 + -0.3 1,861,675 + -1.0 1,861,675 + -0.6 1,861,675 + -0.6 1,861,675 + -1.9 1,861,675 + +1.9 1,861,675 + -1.2 1,861,676 - +0.7 1,861,676 - +0.7 1,861,676 - +2.4 1,861,676 - +0.1 1,861,676 - -1.1 1,861,676 - +1.2 1,861,676 - +0.4 1,861,711 + +0.4 1,861,711 + +1.7 1,861,711 + +0.2 1,861,711 + +0.3 1,861,711 + +1.3 1,861,711 + +0.2 1,861,711 + -0.3 1,861,711 + -0.9 1,861,711 + +0.7 1,861,711 + -0.8 1,861,711 + +0.5 1,861,711 + +0.3 1,861,711 + +0.5 1,861,711 + -1.5 1,861,711 + -1.9 1,861,711 + +0.7 1,861,711 + +0.5 1,861,711 + +1.7 1,861,711 + +0.1 1,861,711 + +0.7 1,861,711 + +0.8 1,861,711 + -1.1 1,861,711 + -0.6 1,861,711 + -1.0 1,861,711 + +1.0 1,861,711 + +0.1 1,861,711 + +0.8 1,861,711 + +0.4 1,861,711 + +0.1 1,861,711 + +0.2 1,861,711 + -0.8 1,861,711 + -0.2 1,861,711 + -0.5 1,861,712 - +0.2 1,861,712 - +2.5 1,861,712 - -0.5 1,861,712 - -0.6 1,861,712 - -0.5 1,861,712 - +0.4 1,861,712 - -1.0 1,861,712 - -0.2 1,861,712 - +0.2 1,861,712 - +0.5 1,861,712 - +0.5 1,861,712 - -0.6 1,861,712 - +0.2 1,861,712 - -0.2 1,861,712 - -1.3 1,861,712 - -1.1 1,861,712 - +0.7 1,861,712 - -0.0 1,861,712 - -0.4 1,861,802 + LRK54_RS08535 0.18 +1.7 1,861,802 + LRK54_RS08535 0.18 +0.0 1,861,802 + LRK54_RS08535 0.18 -0.5 1,861,802 + LRK54_RS08535 0.18 -1.1 1,861,802 + LRK54_RS08535 0.18 +0.4 1,861,802 + LRK54_RS08535 0.18 -0.1 1,861,802 + LRK54_RS08535 0.18 -0.1 1,861,802 + LRK54_RS08535 0.18 +0.7 1,861,802 + LRK54_RS08535 0.18 +0.3 1,861,802 + LRK54_RS08535 0.18 -1.3 1,861,802 + LRK54_RS08535 0.18 -0.3 1,861,802 + LRK54_RS08535 0.18 -0.4 1,861,802 + LRK54_RS08535 0.18 +0.1 1,861,802 + LRK54_RS08535 0.18 -0.3 1,861,802 + LRK54_RS08535 0.18 -0.2 1,861,802 + LRK54_RS08535 0.18 +0.4 1,861,802 + LRK54_RS08535 0.18 +0.4 1,861,802 + LRK54_RS08535 0.18 -0.1 1,861,802 + LRK54_RS08535 0.18 +0.0 1,861,803 - LRK54_RS08535 0.18 +0.3 1,861,803 - LRK54_RS08535 0.18 -0.9 1,861,803 - LRK54_RS08535 0.18 +1.4 1,861,803 - LRK54_RS08535 0.18 -0.7 1,861,803 - LRK54_RS08535 0.18 -1.3 1,861,803 - -1.6 1,861,803 - LRK54_RS08535 0.18 -1.0 1,861,803 - LRK54_RS08535 0.18 -0.2 1,861,803 - LRK54_RS08535 0.18 -0.5 1,861,803 - LRK54_RS08535 0.18 +1.0 1,861,803 - LRK54_RS08535 0.18 +0.5 1,861,803 - LRK54_RS08535 0.18 -0.8 1,861,803 - LRK54_RS08535 0.18 +0.1 1,861,803 - LRK54_RS08535 0.18 -0.3 1,861,803 - LRK54_RS08535 0.18 -0.4 1,861,803 - LRK54_RS08535 0.18 +0.4 1,861,803 - LRK54_RS08535 0.18 -0.0 1,861,875 + LRK54_RS08535 0.26 +0.1 1,861,875 + LRK54_RS08535 0.26 +1.7 1,861,875 + LRK54_RS08535 0.26 -0.9 1,861,875 + LRK54_RS08535 0.26 -0.9 1,861,875 + LRK54_RS08535 0.26 +1.3 1,861,875 + LRK54_RS08535 0.26 +1.3 1,861,875 + LRK54_RS08535 0.26 -0.3 1,861,875 + LRK54_RS08535 0.26 -0.5 1,861,875 + LRK54_RS08535 0.26 +0.2 1,861,875 + LRK54_RS08535 0.26 +0.2 1,861,875 + LRK54_RS08535 0.26 -0.4 1,861,875 + LRK54_RS08535 0.26 -0.3 1,861,875 + LRK54_RS08535 0.26 +2.1 1,861,875 + LRK54_RS08535 0.26 +2.1 1,861,876 - LRK54_RS08535 0.27 -1.9 1,861,876 - LRK54_RS08535 0.27 -0.6 1,861,876 - LRK54_RS08535 0.27 -1.3 1,861,876 - LRK54_RS08535 0.27 +1.5 1,861,876 - LRK54_RS08535 0.27 +0.1 1,861,876 - LRK54_RS08535 0.27 +0.5 1,861,876 - LRK54_RS08535 0.27 -0.4 1,861,876 - LRK54_RS08535 0.27 +0.7 1,861,876 - LRK54_RS08535 0.27 +0.7 1,861,876 - LRK54_RS08535 0.27 -0.4 1,861,876 - LRK54_RS08535 0.27 -0.6 1,861,876 - LRK54_RS08535 0.27 -0.5 1,861,876 - LRK54_RS08535 0.27 -1.5 1,861,876 - LRK54_RS08535 0.27 +2.7 1,861,876 - LRK54_RS08535 0.27 +0.5 1,861,876 - LRK54_RS08535 0.27 -0.3 1,861,876 - LRK54_RS08535 0.27 +1.1 1,862,101 + LRK54_RS08535 0.52 -0.2 1,862,101 + LRK54_RS08535 0.52 +2.3 1,862,101 + LRK54_RS08535 0.52 -1.4 1,862,101 + LRK54_RS08535 0.52 +1.1 1,862,101 + LRK54_RS08535 0.52 -1.1 1,862,101 + LRK54_RS08535 0.52 +1.7 1,862,101 + LRK54_RS08535 0.52 +0.3 1,862,101 + LRK54_RS08535 0.52 -0.2 1,862,101 + LRK54_RS08535 0.52 -1.3 1,862,101 + LRK54_RS08535 0.52 +1.1 1,862,102 - LRK54_RS08535 0.52 +0.1 1,862,102 - LRK54_RS08535 0.52 -0.0 1,862,102 - LRK54_RS08535 0.52 -0.2 1,862,102 - LRK54_RS08535 0.52 +0.8 1,862,102 - LRK54_RS08535 0.52 +0.9 1,862,102 - LRK54_RS08535 0.52 +1.7 1,862,102 - LRK54_RS08535 0.52 -0.9 1,862,102 - LRK54_RS08535 0.52 -0.3 1,862,102 - LRK54_RS08535 0.52 -2.7 1,862,102 - LRK54_RS08535 0.52 +1.2 1,862,102 - LRK54_RS08535 0.52 +0.1 1,862,211 + LRK54_RS08535 0.64 -2.9 1,862,211 + LRK54_RS08535 0.64 +0.2 1,862,211 + LRK54_RS08535 0.64 -1.5 1,862,211 + LRK54_RS08535 0.64 -0.3 1,862,211 + LRK54_RS08535 0.64 +0.0 1,862,211 + LRK54_RS08535 0.64 -0.8 1,862,211 + LRK54_RS08535 0.64 +0.5 1,862,211 + LRK54_RS08535 0.64 +0.2 1,862,212 - LRK54_RS08535 0.65 +1.3 1,862,212 - LRK54_RS08535 0.65 +0.1 1,862,212 - LRK54_RS08535 0.65 -0.3 1,862,212 - LRK54_RS08535 0.65 -1.4 1,862,212 - LRK54_RS08535 0.65 -0.5 1,862,541 + +1.7 1,862,541 + -2.3 1,862,541 + +0.1 1,862,541 + +0.2 1,862,541 + +0.1 1,862,541 + -0.8 1,862,542 - -1.1 1,862,542 - -0.7 1,862,542 - -1.9 1,862,542 - -1.8 1,862,542 - +0.3 1,862,881 - LRK54_RS08540 0.50 +0.6 1,863,068 + LRK54_RS08540 0.77 -1.3 1,863,068 + LRK54_RS08540 0.77 -0.3 1,863,068 + LRK54_RS08540 0.77 -1.1 1,863,068 + LRK54_RS08540 0.77 -0.2 1,863,068 + LRK54_RS08540 0.77 -1.5 1,863,068 + LRK54_RS08540 0.77 -0.2 1,863,068 + LRK54_RS08540 0.77 -1.2 1,863,068 + LRK54_RS08540 0.77 -0.2 1,863,068 + LRK54_RS08540 0.77 -1.1 1,863,068 + LRK54_RS08540 0.77 -0.4 1,863,068 + LRK54_RS08540 0.77 -1.1 1,863,068 + LRK54_RS08540 0.77 +0.2 1,863,068 + LRK54_RS08540 0.77 -0.3 1,863,069 - LRK54_RS08540 0.77 -0.8 1,863,069 - LRK54_RS08540 0.77 +0.7 1,863,069 - LRK54_RS08540 0.77 +0.7 1,863,069 - LRK54_RS08540 0.77 -0.3 1,863,069 - LRK54_RS08540 0.77 -1.1 1,863,069 - LRK54_RS08540 0.77 -0.4 1,863,069 - LRK54_RS08540 0.77 -1.1 1,863,069 - LRK54_RS08540 0.77 -1.1 1,863,069 - LRK54_RS08540 0.77 -0.2 1,863,069 - LRK54_RS08540 0.77 -1.0 1,863,069 - LRK54_RS08540 0.77 -0.7 1,863,069 - LRK54_RS08540 0.77 +0.8 1,863,141 - LRK54_RS08540 0.88 -0.2 1,863,173 + -0.2 1,863,173 + +0.6 1,863,174 - +1.1 1,863,174 - -2.4 1,863,174 - -3.7
Or see this region's nucleotide sequence