Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01969

Experiment: RCH2_defined_glucose plate, 1:1 coculture with Streptomyces_sp._SAI_041

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01967 and MPMX20_01968 are separated by 125 nucleotidesMPMX20_01968 and MPMX20_01969 are separated by 72 nucleotidesMPMX20_01969 and MPMX20_01970 are separated by 28 nucleotides MPMX20_01967: MPMX20_01967 - hypothetical protein, at 2,060,142 to 2,060,282 _01967 MPMX20_01968: MPMX20_01968 - hypothetical protein, at 2,060,408 to 2,061,190 _01968 MPMX20_01969: MPMX20_01969 - Carbonic anhydrase 1, at 2,061,263 to 2,061,898 _01969 MPMX20_01970: MPMX20_01970 - hypothetical protein, at 2,061,927 to 2,063,522 _01970 Position (kb) 2061 2062Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2060.270 kb on - strandat 2060.315 kb on + strandat 2060.315 kb on + strandat 2060.320 kb on + strandat 2060.328 kb on - strandat 2060.345 kb on + strandat 2060.348 kb on - strandat 2060.348 kb on - strandat 2060.355 kb on + strandat 2060.379 kb on + strandat 2060.382 kb on - strandat 2060.394 kb on + strandat 2060.409 kb on + strandat 2060.409 kb on + strandat 2060.409 kb on + strandat 2060.409 kb on + strandat 2060.417 kb on - strandat 2060.417 kb on - strandat 2060.417 kb on - strandat 2060.417 kb on - strandat 2060.417 kb on - strandat 2060.417 kb on - strandat 2060.419 kb on + strandat 2060.419 kb on + strandat 2060.419 kb on + strandat 2060.419 kb on + strandat 2060.419 kb on + strandat 2060.419 kb on + strandat 2060.427 kb on - strandat 2060.427 kb on - strandat 2060.427 kb on - strandat 2060.427 kb on - strandat 2060.427 kb on - strandat 2060.427 kb on - strandat 2060.492 kb on + strand, within MPMX20_01968at 2060.571 kb on - strand, within MPMX20_01968at 2060.634 kb on - strand, within MPMX20_01968at 2060.644 kb on + strand, within MPMX20_01968at 2060.759 kb on + strand, within MPMX20_01968at 2060.847 kb on + strand, within MPMX20_01968at 2060.867 kb on - strand, within MPMX20_01968at 2060.867 kb on - strand, within MPMX20_01968at 2060.927 kb on + strand, within MPMX20_01968at 2060.935 kb on - strand, within MPMX20_01968at 2060.945 kb on - strand, within MPMX20_01968at 2060.946 kb on - strand, within MPMX20_01968at 2060.954 kb on - strand, within MPMX20_01968at 2060.980 kb on + strand, within MPMX20_01968at 2061.116 kb on + strandat 2061.207 kb on - strandat 2061.336 kb on + strand, within MPMX20_01969at 2061.375 kb on - strand, within MPMX20_01969at 2061.375 kb on - strand, within MPMX20_01969at 2061.411 kb on + strand, within MPMX20_01969at 2061.420 kb on + strand, within MPMX20_01969at 2061.428 kb on - strand, within MPMX20_01969at 2061.433 kb on - strand, within MPMX20_01969at 2061.474 kb on + strand, within MPMX20_01969at 2061.474 kb on + strand, within MPMX20_01969at 2061.482 kb on - strand, within MPMX20_01969at 2061.526 kb on + strand, within MPMX20_01969at 2061.534 kb on - strand, within MPMX20_01969at 2061.556 kb on + strand, within MPMX20_01969at 2061.556 kb on + strand, within MPMX20_01969at 2061.556 kb on + strand, within MPMX20_01969at 2061.707 kb on - strand, within MPMX20_01969at 2061.811 kb on + strand, within MPMX20_01969at 2061.838 kb on + strandat 2061.877 kb on + strandat 2061.901 kb on - strandat 2061.903 kb on + strandat 2061.977 kb on - strandat 2062.012 kb on - strandat 2062.022 kb on + strandat 2062.116 kb on - strand, within MPMX20_01970at 2062.116 kb on - strand, within MPMX20_01970at 2062.147 kb on + strand, within MPMX20_01970at 2062.166 kb on + strand, within MPMX20_01970at 2062.166 kb on + strand, within MPMX20_01970at 2062.174 kb on - strand, within MPMX20_01970at 2062.174 kb on - strand, within MPMX20_01970at 2062.176 kb on + strand, within MPMX20_01970at 2062.176 kb on - strand, within MPMX20_01970at 2062.199 kb on + strand, within MPMX20_01970at 2062.199 kb on + strand, within MPMX20_01970at 2062.329 kb on + strand, within MPMX20_01970at 2062.439 kb on + strand, within MPMX20_01970at 2062.447 kb on - strand, within MPMX20_01970at 2062.460 kb on - strand, within MPMX20_01970at 2062.460 kb on - strand, within MPMX20_01970at 2062.462 kb on + strand, within MPMX20_01970at 2062.483 kb on + strand, within MPMX20_01970at 2062.483 kb on + strand, within MPMX20_01970at 2062.488 kb on + strand, within MPMX20_01970at 2062.491 kb on - strand, within MPMX20_01970at 2062.491 kb on - strand, within MPMX20_01970at 2062.497 kb on - strand, within MPMX20_01970at 2062.498 kb on + strand, within MPMX20_01970at 2062.516 kb on - strand, within MPMX20_01970at 2062.521 kb on - strand, within MPMX20_01970at 2062.639 kb on + strand, within MPMX20_01970at 2062.658 kb on + strand, within MPMX20_01970at 2062.658 kb on + strand, within MPMX20_01970at 2062.666 kb on - strand, within MPMX20_01970at 2062.704 kb on + strand, within MPMX20_01970at 2062.760 kb on - strand, within MPMX20_01970at 2062.772 kb on - strand, within MPMX20_01970at 2062.777 kb on - strand, within MPMX20_01970

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose plate, 1:1 coculture with Streptomyces_sp._SAI_041
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2,060,270 - +1.5
2,060,315 + -1.4
2,060,315 + -0.0
2,060,320 + -2.5
2,060,328 - +0.3
2,060,345 + -0.6
2,060,348 - +0.7
2,060,348 - +0.7
2,060,355 + +2.4
2,060,379 + -1.2
2,060,382 - +1.8
2,060,394 + -1.5
2,060,409 + +0.5
2,060,409 + +0.7
2,060,409 + -0.7
2,060,409 + +1.8
2,060,417 - +0.3
2,060,417 - -1.5
2,060,417 - +1.4
2,060,417 - +1.4
2,060,417 - +0.7
2,060,417 - -0.3
2,060,419 + -0.6
2,060,419 + -0.2
2,060,419 + -0.6
2,060,419 + +1.4
2,060,419 + +4.0
2,060,419 + -1.5
2,060,427 - +1.5
2,060,427 - -1.1
2,060,427 - -0.4
2,060,427 - -2.1
2,060,427 - -1.7
2,060,427 - +3.1
2,060,492 + MPMX20_01968 0.11 -1.4
2,060,571 - MPMX20_01968 0.21 -1.6
2,060,634 - MPMX20_01968 0.29 -0.4
2,060,644 + MPMX20_01968 0.30 -2.4
2,060,759 + MPMX20_01968 0.45 +0.0
2,060,847 + MPMX20_01968 0.56 -1.2
2,060,867 - MPMX20_01968 0.59 -1.0
2,060,867 - MPMX20_01968 0.59 +0.6
2,060,927 + MPMX20_01968 0.66 -1.4
2,060,935 - MPMX20_01968 0.67 -0.4
2,060,945 - MPMX20_01968 0.69 +0.0
2,060,946 - MPMX20_01968 0.69 -2.4
2,060,954 - MPMX20_01968 0.70 -1.7
2,060,980 + MPMX20_01968 0.73 -0.6
2,061,116 + -1.4
2,061,207 - -2.3
2,061,336 + MPMX20_01969 0.11 -0.5
2,061,375 - MPMX20_01969 0.18 -0.5
2,061,375 - MPMX20_01969 0.18 -0.2
2,061,411 + MPMX20_01969 0.23 -1.1
2,061,420 + MPMX20_01969 0.25 -1.3
2,061,428 - MPMX20_01969 0.26 -2.3
2,061,433 - MPMX20_01969 0.27 -0.5
2,061,474 + MPMX20_01969 0.33 +1.3
2,061,474 + MPMX20_01969 0.33 -2.1
2,061,482 - MPMX20_01969 0.34 -1.2
2,061,526 + MPMX20_01969 0.41 -0.2
2,061,534 - MPMX20_01969 0.43 +1.3
2,061,556 + MPMX20_01969 0.46 +0.5
2,061,556 + MPMX20_01969 0.46 +2.8
2,061,556 + MPMX20_01969 0.46 -1.3
2,061,707 - MPMX20_01969 0.70 -0.5
2,061,811 + MPMX20_01969 0.86 +0.0
2,061,838 + -0.9
2,061,877 + -1.9
2,061,901 - -0.3
2,061,903 + -1.3
2,061,977 - +0.4
2,062,012 - -0.6
2,062,022 + +1.3
2,062,116 - MPMX20_01970 0.12 +1.8
2,062,116 - MPMX20_01970 0.12 -0.7
2,062,147 + MPMX20_01970 0.14 -0.1
2,062,166 + MPMX20_01970 0.15 +2.0
2,062,166 + MPMX20_01970 0.15 +1.0
2,062,174 - MPMX20_01970 0.15 -0.7
2,062,174 - MPMX20_01970 0.15 -3.2
2,062,176 + MPMX20_01970 0.16 -2.6
2,062,176 - MPMX20_01970 0.16 +1.1
2,062,199 + MPMX20_01970 0.17 -0.1
2,062,199 + MPMX20_01970 0.17 +0.8
2,062,329 + MPMX20_01970 0.25 +1.3
2,062,439 + MPMX20_01970 0.32 -3.1
2,062,447 - MPMX20_01970 0.33 -0.0
2,062,460 - MPMX20_01970 0.33 +0.2
2,062,460 - MPMX20_01970 0.33 +3.7
2,062,462 + MPMX20_01970 0.34 -0.9
2,062,483 + MPMX20_01970 0.35 +1.1
2,062,483 + MPMX20_01970 0.35 +1.5
2,062,488 + MPMX20_01970 0.35 -1.7
2,062,491 - MPMX20_01970 0.35 -0.1
2,062,491 - MPMX20_01970 0.35 -2.7
2,062,497 - MPMX20_01970 0.36 +2.7
2,062,498 + MPMX20_01970 0.36 -1.3
2,062,516 - MPMX20_01970 0.37 -0.5
2,062,521 - MPMX20_01970 0.37 -0.2
2,062,639 + MPMX20_01970 0.45 -2.5
2,062,658 + MPMX20_01970 0.46 -0.5
2,062,658 + MPMX20_01970 0.46 -0.4
2,062,666 - MPMX20_01970 0.46 +0.6
2,062,704 + MPMX20_01970 0.49 +2.8
2,062,760 - MPMX20_01970 0.52 +1.7
2,062,772 - MPMX20_01970 0.53 +1.6
2,062,777 - MPMX20_01970 0.53 +3.9

Or see this region's nucleotide sequence