Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01284

Experiment: RCH2_defined_glucose plate, 1:1 coculture with Streptomyces_sp._SAI_041

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_01282 and MPMX20_01283 are separated by 190 nucleotidesMPMX20_01283 and MPMX20_01284 are separated by 220 nucleotidesMPMX20_01284 and MPMX20_01285 are separated by 67 nucleotidesMPMX20_01285 and MPMX20_01286 are separated by 126 nucleotides MPMX20_01282: MPMX20_01282 - Lipid A palmitoyltransferase PagP, at 1,344,922 to 1,345,539 _01282 MPMX20_01283: MPMX20_01283 - Cold shock-like protein CspE, at 1,345,730 to 1,345,939 _01283 MPMX20_01284: MPMX20_01284 - Putative fluoride ion transporter CrcB, at 1,346,160 to 1,346,543 _01284 MPMX20_01285: MPMX20_01285 - Deaminated glutathione amidase, at 1,346,611 to 1,347,399 _01285 MPMX20_01286: MPMX20_01286 - Sec-independent protein translocase protein TatE, at 1,347,526 to 1,347,729 _01286 Position (kb) 1346 1347Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 1345.162 kb on + strand, within MPMX20_01282at 1345.187 kb on + strand, within MPMX20_01282at 1345.195 kb on - strand, within MPMX20_01282at 1345.195 kb on - strand, within MPMX20_01282at 1345.211 kb on - strand, within MPMX20_01282at 1345.213 kb on + strand, within MPMX20_01282at 1345.214 kb on + strand, within MPMX20_01282at 1345.214 kb on + strand, within MPMX20_01282at 1345.221 kb on - strand, within MPMX20_01282at 1345.221 kb on - strand, within MPMX20_01282at 1345.221 kb on - strand, within MPMX20_01282at 1345.221 kb on - strand, within MPMX20_01282at 1345.222 kb on - strand, within MPMX20_01282at 1345.222 kb on - strand, within MPMX20_01282at 1345.222 kb on - strand, within MPMX20_01282at 1345.222 kb on - strand, within MPMX20_01282at 1345.222 kb on - strand, within MPMX20_01282at 1345.222 kb on - strand, within MPMX20_01282at 1345.222 kb on - strand, within MPMX20_01282at 1345.283 kb on + strand, within MPMX20_01282at 1345.293 kb on + strand, within MPMX20_01282at 1345.300 kb on - strand, within MPMX20_01282at 1345.300 kb on - strand, within MPMX20_01282at 1345.309 kb on + strand, within MPMX20_01282at 1345.317 kb on - strand, within MPMX20_01282at 1345.363 kb on + strand, within MPMX20_01282at 1345.363 kb on + strand, within MPMX20_01282at 1345.363 kb on + strand, within MPMX20_01282at 1345.363 kb on + strand, within MPMX20_01282at 1345.363 kb on + strand, within MPMX20_01282at 1345.363 kb on + strand, within MPMX20_01282at 1345.368 kb on + strand, within MPMX20_01282at 1345.368 kb on + strand, within MPMX20_01282at 1345.368 kb on + strand, within MPMX20_01282at 1345.371 kb on - strand, within MPMX20_01282at 1345.371 kb on - strand, within MPMX20_01282at 1345.371 kb on - strand, within MPMX20_01282at 1345.371 kb on - strand, within MPMX20_01282at 1345.371 kb on - strand, within MPMX20_01282at 1345.371 kb on - strand, within MPMX20_01282at 1345.376 kb on - strand, within MPMX20_01282at 1345.376 kb on - strand, within MPMX20_01282at 1345.376 kb on - strand, within MPMX20_01282at 1345.376 kb on - strand, within MPMX20_01282at 1345.376 kb on - strand, within MPMX20_01282at 1345.376 kb on - strand, within MPMX20_01282at 1345.384 kb on - strand, within MPMX20_01282at 1345.425 kb on + strand, within MPMX20_01282at 1345.432 kb on + strand, within MPMX20_01282at 1345.440 kb on - strand, within MPMX20_01282at 1345.448 kb on + strand, within MPMX20_01282at 1345.448 kb on + strand, within MPMX20_01282at 1345.448 kb on + strand, within MPMX20_01282at 1345.448 kb on + strand, within MPMX20_01282at 1345.448 kb on + strand, within MPMX20_01282at 1345.462 kb on - strand, within MPMX20_01282at 1345.475 kb on + strand, within MPMX20_01282at 1345.475 kb on + strand, within MPMX20_01282at 1345.475 kb on + strand, within MPMX20_01282at 1345.475 kb on + strand, within MPMX20_01282at 1345.475 kb on + strand, within MPMX20_01282at 1345.475 kb on + strand, within MPMX20_01282at 1345.483 kb on - strandat 1345.483 kb on - strandat 1345.483 kb on - strandat 1345.483 kb on - strandat 1345.483 kb on - strandat 1345.483 kb on - strandat 1345.483 kb on - strandat 1345.506 kb on + strandat 1345.506 kb on + strandat 1345.506 kb on + strandat 1345.506 kb on + strandat 1345.506 kb on + strandat 1345.514 kb on - strandat 1345.514 kb on - strandat 1345.524 kb on - strandat 1345.678 kb on + strandat 1345.686 kb on - strandat 1345.758 kb on + strand, within MPMX20_01283at 1345.758 kb on + strand, within MPMX20_01283at 1345.758 kb on + strand, within MPMX20_01283at 1345.766 kb on - strand, within MPMX20_01283at 1345.799 kb on - strand, within MPMX20_01283at 1345.814 kb on - strand, within MPMX20_01283at 1345.825 kb on + strand, within MPMX20_01283at 1345.833 kb on - strand, within MPMX20_01283at 1345.840 kb on + strand, within MPMX20_01283at 1345.847 kb on - strand, within MPMX20_01283at 1345.869 kb on - strand, within MPMX20_01283at 1346.050 kb on + strandat 1346.056 kb on + strandat 1346.058 kb on - strandat 1346.061 kb on + strandat 1346.061 kb on + strandat 1346.063 kb on - strandat 1346.064 kb on - strandat 1346.064 kb on - strandat 1346.064 kb on - strandat 1346.064 kb on - strandat 1346.064 kb on - strandat 1346.064 kb on - strandat 1346.106 kb on + strandat 1346.114 kb on - strandat 1346.114 kb on - strandat 1346.118 kb on + strandat 1346.143 kb on + strandat 1346.143 kb on + strandat 1346.143 kb on + strandat 1346.151 kb on - strandat 1346.151 kb on - strandat 1346.153 kb on + strandat 1346.157 kb on + strandat 1346.207 kb on + strand, within MPMX20_01284at 1346.215 kb on - strand, within MPMX20_01284at 1346.256 kb on + strand, within MPMX20_01284at 1346.266 kb on + strand, within MPMX20_01284at 1346.274 kb on - strand, within MPMX20_01284at 1346.274 kb on - strand, within MPMX20_01284at 1346.354 kb on - strand, within MPMX20_01284at 1346.380 kb on + strand, within MPMX20_01284at 1346.380 kb on + strand, within MPMX20_01284at 1346.383 kb on - strand, within MPMX20_01284at 1346.388 kb on - strand, within MPMX20_01284at 1346.388 kb on - strand, within MPMX20_01284at 1346.413 kb on + strand, within MPMX20_01284at 1346.413 kb on + strand, within MPMX20_01284at 1346.420 kb on + strand, within MPMX20_01284at 1346.421 kb on - strand, within MPMX20_01284at 1346.421 kb on - strand, within MPMX20_01284at 1346.456 kb on - strand, within MPMX20_01284at 1346.494 kb on + strand, within MPMX20_01284at 1346.494 kb on + strand, within MPMX20_01284at 1346.502 kb on - strand, within MPMX20_01284at 1346.502 kb on - strand, within MPMX20_01284at 1346.543 kb on + strandat 1346.639 kb on - strandat 1346.680 kb on + strandat 1346.695 kb on - strand, within MPMX20_01285at 1346.732 kb on - strand, within MPMX20_01285at 1346.736 kb on + strand, within MPMX20_01285at 1346.756 kb on + strand, within MPMX20_01285at 1346.756 kb on + strand, within MPMX20_01285at 1346.764 kb on - strand, within MPMX20_01285at 1346.769 kb on + strand, within MPMX20_01285at 1346.774 kb on + strand, within MPMX20_01285at 1346.849 kb on + strand, within MPMX20_01285at 1346.857 kb on - strand, within MPMX20_01285at 1346.865 kb on - strand, within MPMX20_01285at 1346.865 kb on - strand, within MPMX20_01285at 1347.007 kb on - strand, within MPMX20_01285at 1347.012 kb on + strand, within MPMX20_01285at 1347.020 kb on - strand, within MPMX20_01285at 1347.026 kb on + strand, within MPMX20_01285at 1347.058 kb on - strand, within MPMX20_01285at 1347.058 kb on - strand, within MPMX20_01285at 1347.058 kb on - strand, within MPMX20_01285at 1347.068 kb on - strand, within MPMX20_01285at 1347.089 kb on + strand, within MPMX20_01285at 1347.129 kb on + strand, within MPMX20_01285at 1347.129 kb on + strand, within MPMX20_01285at 1347.129 kb on + strand, within MPMX20_01285at 1347.137 kb on - strand, within MPMX20_01285at 1347.137 kb on - strand, within MPMX20_01285at 1347.137 kb on - strand, within MPMX20_01285at 1347.137 kb on - strand, within MPMX20_01285at 1347.137 kb on - strand, within MPMX20_01285at 1347.148 kb on + strand, within MPMX20_01285at 1347.165 kb on + strand, within MPMX20_01285at 1347.166 kb on - strand, within MPMX20_01285at 1347.186 kb on + strand, within MPMX20_01285at 1347.194 kb on - strand, within MPMX20_01285at 1347.202 kb on + strand, within MPMX20_01285at 1347.209 kb on + strand, within MPMX20_01285at 1347.243 kb on + strand, within MPMX20_01285at 1347.243 kb on + strand, within MPMX20_01285at 1347.243 kb on + strand, within MPMX20_01285at 1347.246 kb on - strand, within MPMX20_01285at 1347.251 kb on - strand, within MPMX20_01285at 1347.251 kb on - strand, within MPMX20_01285at 1347.266 kb on + strand, within MPMX20_01285at 1347.436 kb on + strandat 1347.463 kb on - strandat 1347.463 kb on - strandat 1347.463 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose plate, 1:1 coculture with Streptomyces_sp._SAI_041
remove
1,345,162 + MPMX20_01282 0.39 +0.8
1,345,187 + MPMX20_01282 0.43 +0.0
1,345,195 - MPMX20_01282 0.44 +1.0
1,345,195 - MPMX20_01282 0.44 -1.7
1,345,211 - MPMX20_01282 0.47 -1.3
1,345,213 + MPMX20_01282 0.47 +0.2
1,345,214 + MPMX20_01282 0.47 -1.9
1,345,214 + MPMX20_01282 0.47 -1.2
1,345,221 - MPMX20_01282 0.48 -0.5
1,345,221 - MPMX20_01282 0.48 +1.3
1,345,221 - MPMX20_01282 0.48 -1.9
1,345,221 - MPMX20_01282 0.48 -1.6
1,345,222 - MPMX20_01282 0.49 -0.2
1,345,222 - MPMX20_01282 0.49 +0.2
1,345,222 - MPMX20_01282 0.49 -1.3
1,345,222 - MPMX20_01282 0.49 -1.0
1,345,222 - MPMX20_01282 0.49 -0.5
1,345,222 - MPMX20_01282 0.49 +0.2
1,345,222 - MPMX20_01282 0.49 -0.9
1,345,283 + MPMX20_01282 0.58 +6.1
1,345,293 + MPMX20_01282 0.60 -0.2
1,345,300 - MPMX20_01282 0.61 +0.6
1,345,300 - MPMX20_01282 0.61 -0.1
1,345,309 + MPMX20_01282 0.63 -0.1
1,345,317 - MPMX20_01282 0.64 -0.6
1,345,363 + MPMX20_01282 0.71 -2.3
1,345,363 + MPMX20_01282 0.71 -0.5
1,345,363 + MPMX20_01282 0.71 -0.2
1,345,363 + MPMX20_01282 0.71 -0.4
1,345,363 + MPMX20_01282 0.71 -2.7
1,345,363 + MPMX20_01282 0.71 +0.8
1,345,368 + MPMX20_01282 0.72 +1.4
1,345,368 + MPMX20_01282 0.72 -2.2
1,345,368 + MPMX20_01282 0.72 -0.1
1,345,371 - MPMX20_01282 0.73 +1.4
1,345,371 - MPMX20_01282 0.73 -1.7
1,345,371 - MPMX20_01282 0.73 +0.2
1,345,371 - MPMX20_01282 0.73 +3.6
1,345,371 - MPMX20_01282 0.73 -1.9
1,345,371 - MPMX20_01282 0.73 -1.8
1,345,376 - MPMX20_01282 0.73 -0.8
1,345,376 - MPMX20_01282 0.73 -2.2
1,345,376 - MPMX20_01282 0.73 -0.6
1,345,376 - MPMX20_01282 0.73 -0.2
1,345,376 - MPMX20_01282 0.73 -0.2
1,345,376 - MPMX20_01282 0.73 -1.3
1,345,384 - MPMX20_01282 0.75 -2.7
1,345,425 + MPMX20_01282 0.81 +0.6
1,345,432 + MPMX20_01282 0.83 -2.6
1,345,440 - MPMX20_01282 0.84 -2.6
1,345,448 + MPMX20_01282 0.85 +0.0
1,345,448 + MPMX20_01282 0.85 +0.2
1,345,448 + MPMX20_01282 0.85 +0.6
1,345,448 + MPMX20_01282 0.85 +0.6
1,345,448 + MPMX20_01282 0.85 -1.4
1,345,462 - MPMX20_01282 0.87 +1.4
1,345,475 + MPMX20_01282 0.89 -0.4
1,345,475 + MPMX20_01282 0.89 -1.0
1,345,475 + MPMX20_01282 0.89 -1.0
1,345,475 + MPMX20_01282 0.89 -0.6
1,345,475 + MPMX20_01282 0.89 +1.3
1,345,475 + MPMX20_01282 0.89 +0.2
1,345,483 - -0.4
1,345,483 - +0.2
1,345,483 - +5.6
1,345,483 - -0.6
1,345,483 - -0.1
1,345,483 - -0.1
1,345,483 - +0.8
1,345,506 + -0.6
1,345,506 + -3.1
1,345,506 + -1.8
1,345,506 + +2.8
1,345,506 + +0.3
1,345,514 - +0.2
1,345,514 - -2.2
1,345,524 - -0.8
1,345,678 + -0.4
1,345,686 - -0.6
1,345,758 + MPMX20_01283 0.13 +0.6
1,345,758 + MPMX20_01283 0.13 +2.6
1,345,758 + MPMX20_01283 0.13 -0.6
1,345,766 - MPMX20_01283 0.17 -0.6
1,345,799 - MPMX20_01283 0.33 +0.5
1,345,814 - MPMX20_01283 0.40 +2.0
1,345,825 + MPMX20_01283 0.45 -0.3
1,345,833 - MPMX20_01283 0.49 -0.2
1,345,840 + MPMX20_01283 0.52 -2.9
1,345,847 - MPMX20_01283 0.56 +0.6
1,345,869 - MPMX20_01283 0.66 +2.0
1,346,050 + -0.4
1,346,056 + -1.4
1,346,058 - -1.2
1,346,061 + -0.1
1,346,061 + -2.2
1,346,063 - -0.0
1,346,064 - -2.6
1,346,064 - -2.4
1,346,064 - -2.1
1,346,064 - +0.6
1,346,064 - +0.8
1,346,064 - +2.8
1,346,106 + -0.7
1,346,114 - -0.2
1,346,114 - -0.8
1,346,118 + +1.2
1,346,143 + -0.9
1,346,143 + -1.0
1,346,143 + -1.7
1,346,151 - +1.8
1,346,151 - -0.4
1,346,153 + -1.1
1,346,157 + +1.0
1,346,207 + MPMX20_01284 0.12 -1.2
1,346,215 - MPMX20_01284 0.14 -0.8
1,346,256 + MPMX20_01284 0.25 -2.5
1,346,266 + MPMX20_01284 0.28 -2.2
1,346,274 - MPMX20_01284 0.30 -0.5
1,346,274 - MPMX20_01284 0.30 -1.3
1,346,354 - MPMX20_01284 0.51 -0.2
1,346,380 + MPMX20_01284 0.57 -0.3
1,346,380 + MPMX20_01284 0.57 -1.1
1,346,383 - MPMX20_01284 0.58 -2.1
1,346,388 - MPMX20_01284 0.59 -0.5
1,346,388 - MPMX20_01284 0.59 -2.1
1,346,413 + MPMX20_01284 0.66 -2.2
1,346,413 + MPMX20_01284 0.66 -1.9
1,346,420 + MPMX20_01284 0.68 -2.4
1,346,421 - MPMX20_01284 0.68 -0.6
1,346,421 - MPMX20_01284 0.68 -1.6
1,346,456 - MPMX20_01284 0.77 -2.8
1,346,494 + MPMX20_01284 0.87 -0.8
1,346,494 + MPMX20_01284 0.87 -1.4
1,346,502 - MPMX20_01284 0.89 -1.9
1,346,502 - MPMX20_01284 0.89 +0.8
1,346,543 + +1.4
1,346,639 - +0.1
1,346,680 + +2.1
1,346,695 - MPMX20_01285 0.11 -0.9
1,346,732 - MPMX20_01285 0.15 -0.9
1,346,736 + MPMX20_01285 0.16 +1.5
1,346,756 + MPMX20_01285 0.18 +0.6
1,346,756 + MPMX20_01285 0.18 -1.3
1,346,764 - MPMX20_01285 0.19 -1.1
1,346,769 + MPMX20_01285 0.20 -0.7
1,346,774 + MPMX20_01285 0.21 -2.7
1,346,849 + MPMX20_01285 0.30 -2.8
1,346,857 - MPMX20_01285 0.31 -1.1
1,346,865 - MPMX20_01285 0.32 +0.6
1,346,865 - MPMX20_01285 0.32 -1.3
1,347,007 - MPMX20_01285 0.50 -2.6
1,347,012 + MPMX20_01285 0.51 +0.2
1,347,020 - MPMX20_01285 0.52 +1.6
1,347,026 + MPMX20_01285 0.53 +1.1
1,347,058 - MPMX20_01285 0.57 -1.6
1,347,058 - MPMX20_01285 0.57 -0.4
1,347,058 - MPMX20_01285 0.57 +5.5
1,347,068 - MPMX20_01285 0.58 -0.6
1,347,089 + MPMX20_01285 0.61 +0.5
1,347,129 + MPMX20_01285 0.66 -2.5
1,347,129 + MPMX20_01285 0.66 -1.3
1,347,129 + MPMX20_01285 0.66 +2.1
1,347,137 - MPMX20_01285 0.67 -0.9
1,347,137 - MPMX20_01285 0.67 -0.0
1,347,137 - MPMX20_01285 0.67 +0.4
1,347,137 - MPMX20_01285 0.67 -0.6
1,347,137 - MPMX20_01285 0.67 -0.0
1,347,148 + MPMX20_01285 0.68 -1.4
1,347,165 + MPMX20_01285 0.70 -1.3
1,347,166 - MPMX20_01285 0.70 +1.0
1,347,186 + MPMX20_01285 0.73 +0.3
1,347,194 - MPMX20_01285 0.74 +0.4
1,347,202 + MPMX20_01285 0.75 +2.0
1,347,209 + MPMX20_01285 0.76 +1.0
1,347,243 + MPMX20_01285 0.80 +0.4
1,347,243 + MPMX20_01285 0.80 +1.9
1,347,243 + MPMX20_01285 0.80 -0.9
1,347,246 - MPMX20_01285 0.80 -0.5
1,347,251 - MPMX20_01285 0.81 +0.6
1,347,251 - MPMX20_01285 0.81 -0.4
1,347,266 + MPMX20_01285 0.83 -2.3
1,347,436 + -0.5
1,347,463 - -0.2
1,347,463 - +1.4
1,347,463 - +2.0

Or see this region's nucleotide sequence