Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00540

Experiment: RCH2_defined_glucose plate, 1:1 coculture with Streptomyces_sp._SAI_041

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00539 and MPMX20_00540 are separated by 392 nucleotidesMPMX20_00540 and MPMX20_00541 are separated by 150 nucleotides MPMX20_00539: MPMX20_00539 - HTH-type transcriptional regulator TreR, at 559,101 to 560,048 _00539 MPMX20_00540: MPMX20_00540 - Magnesium-transporting ATPase, P-type 1, at 560,441 to 563,149 _00540 MPMX20_00541: MPMX20_00541 - hypothetical protein, at 563,300 to 565,684 _00541 Position (kb) 560 561 562 563 564Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 559.449 kb on + strand, within MPMX20_00539at 559.462 kb on - strand, within MPMX20_00539at 559.521 kb on + strand, within MPMX20_00539at 559.553 kb on + strand, within MPMX20_00539at 559.555 kb on + strand, within MPMX20_00539at 559.568 kb on + strand, within MPMX20_00539at 559.604 kb on - strand, within MPMX20_00539at 559.606 kb on + strand, within MPMX20_00539at 559.641 kb on - strand, within MPMX20_00539at 559.657 kb on - strand, within MPMX20_00539at 559.679 kb on + strand, within MPMX20_00539at 559.679 kb on + strand, within MPMX20_00539at 559.679 kb on + strand, within MPMX20_00539at 559.708 kb on + strand, within MPMX20_00539at 559.738 kb on + strand, within MPMX20_00539at 559.767 kb on + strand, within MPMX20_00539at 559.775 kb on - strand, within MPMX20_00539at 559.781 kb on + strand, within MPMX20_00539at 559.800 kb on + strand, within MPMX20_00539at 559.808 kb on - strand, within MPMX20_00539at 559.808 kb on - strand, within MPMX20_00539at 559.808 kb on - strand, within MPMX20_00539at 559.909 kb on - strand, within MPMX20_00539at 560.013 kb on - strandat 560.057 kb on - strandat 560.075 kb on - strandat 560.077 kb on + strandat 560.077 kb on + strandat 560.087 kb on + strandat 560.087 kb on + strandat 560.087 kb on + strandat 560.095 kb on - strandat 560.095 kb on - strandat 560.102 kb on - strandat 560.116 kb on + strandat 560.152 kb on + strandat 560.154 kb on + strandat 560.154 kb on + strandat 560.154 kb on + strandat 560.154 kb on + strandat 560.154 kb on + strandat 560.154 kb on + strandat 560.154 kb on + strandat 560.154 kb on + strandat 560.162 kb on - strandat 560.162 kb on - strandat 560.162 kb on - strandat 560.162 kb on - strandat 560.162 kb on - strandat 560.162 kb on - strandat 560.162 kb on - strandat 560.162 kb on - strandat 560.162 kb on - strandat 560.162 kb on - strandat 560.162 kb on - strandat 560.162 kb on - strandat 560.162 kb on - strandat 560.162 kb on - strandat 560.188 kb on + strandat 560.188 kb on + strandat 560.194 kb on + strandat 560.194 kb on + strandat 560.194 kb on + strandat 560.195 kb on - strandat 560.202 kb on - strandat 560.202 kb on - strandat 560.202 kb on - strandat 560.202 kb on - strandat 560.202 kb on - strandat 560.242 kb on + strandat 560.310 kb on - strandat 560.371 kb on - strandat 560.489 kb on - strandat 560.499 kb on + strandat 560.499 kb on + strandat 560.507 kb on - strandat 560.542 kb on - strandat 560.566 kb on + strandat 560.566 kb on + strandat 560.619 kb on + strandat 560.683 kb on - strandat 560.711 kb on + strandat 560.726 kb on + strand, within MPMX20_00540at 560.734 kb on - strand, within MPMX20_00540at 560.742 kb on + strand, within MPMX20_00540at 560.750 kb on - strand, within MPMX20_00540at 560.761 kb on + strand, within MPMX20_00540at 560.769 kb on - strand, within MPMX20_00540at 560.819 kb on + strand, within MPMX20_00540at 560.842 kb on + strand, within MPMX20_00540at 560.851 kb on + strand, within MPMX20_00540at 560.859 kb on - strand, within MPMX20_00540at 560.877 kb on - strand, within MPMX20_00540at 560.881 kb on - strand, within MPMX20_00540at 560.895 kb on + strand, within MPMX20_00540at 560.959 kb on + strand, within MPMX20_00540at 560.959 kb on + strand, within MPMX20_00540at 560.964 kb on + strand, within MPMX20_00540at 560.964 kb on + strand, within MPMX20_00540at 560.967 kb on - strand, within MPMX20_00540at 560.972 kb on - strand, within MPMX20_00540at 560.972 kb on - strand, within MPMX20_00540at 561.033 kb on - strand, within MPMX20_00540at 561.038 kb on + strand, within MPMX20_00540at 561.065 kb on - strand, within MPMX20_00540at 561.074 kb on + strand, within MPMX20_00540at 561.126 kb on + strand, within MPMX20_00540at 561.134 kb on - strand, within MPMX20_00540at 561.134 kb on - strand, within MPMX20_00540at 561.134 kb on - strand, within MPMX20_00540at 561.179 kb on - strand, within MPMX20_00540at 561.188 kb on - strand, within MPMX20_00540at 561.191 kb on - strand, within MPMX20_00540at 561.235 kb on + strand, within MPMX20_00540at 561.261 kb on - strand, within MPMX20_00540at 561.328 kb on + strand, within MPMX20_00540at 561.374 kb on + strand, within MPMX20_00540at 561.379 kb on + strand, within MPMX20_00540at 561.383 kb on - strand, within MPMX20_00540at 561.425 kb on + strand, within MPMX20_00540at 561.441 kb on - strand, within MPMX20_00540at 561.521 kb on + strand, within MPMX20_00540at 561.523 kb on + strand, within MPMX20_00540at 561.541 kb on - strand, within MPMX20_00540at 561.605 kb on - strand, within MPMX20_00540at 561.647 kb on + strand, within MPMX20_00540at 561.657 kb on + strand, within MPMX20_00540at 561.665 kb on - strand, within MPMX20_00540at 561.672 kb on + strand, within MPMX20_00540at 561.680 kb on - strand, within MPMX20_00540at 561.723 kb on - strand, within MPMX20_00540at 561.723 kb on - strand, within MPMX20_00540at 561.820 kb on - strand, within MPMX20_00540at 561.857 kb on + strand, within MPMX20_00540at 561.889 kb on - strand, within MPMX20_00540at 561.895 kb on - strand, within MPMX20_00540at 561.935 kb on - strand, within MPMX20_00540at 561.972 kb on + strand, within MPMX20_00540at 561.992 kb on - strand, within MPMX20_00540at 562.257 kb on - strand, within MPMX20_00540at 562.264 kb on + strand, within MPMX20_00540at 562.272 kb on - strand, within MPMX20_00540at 562.279 kb on + strand, within MPMX20_00540at 562.315 kb on - strand, within MPMX20_00540at 562.344 kb on - strand, within MPMX20_00540at 562.358 kb on - strand, within MPMX20_00540at 562.389 kb on + strand, within MPMX20_00540at 562.489 kb on - strand, within MPMX20_00540at 562.631 kb on + strand, within MPMX20_00540at 562.640 kb on - strand, within MPMX20_00540at 562.728 kb on + strand, within MPMX20_00540at 562.752 kb on + strand, within MPMX20_00540at 562.760 kb on - strand, within MPMX20_00540at 562.760 kb on - strand, within MPMX20_00540at 562.765 kb on - strand, within MPMX20_00540at 562.772 kb on - strand, within MPMX20_00540at 562.793 kb on + strand, within MPMX20_00540at 562.838 kb on + strand, within MPMX20_00540at 562.863 kb on - strand, within MPMX20_00540at 562.863 kb on - strand, within MPMX20_00540at 562.870 kb on + strand, within MPMX20_00540at 562.945 kb on - strandat 562.950 kb on - strandat 562.950 kb on - strandat 562.995 kb on + strandat 562.995 kb on + strandat 563.003 kb on - strandat 563.003 kb on - strandat 563.055 kb on + strandat 563.110 kb on + strandat 563.110 kb on + strandat 563.110 kb on + strandat 563.111 kb on + strandat 563.111 kb on + strandat 563.118 kb on - strandat 563.142 kb on - strandat 563.212 kb on - strandat 563.356 kb on - strandat 563.383 kb on + strandat 563.383 kb on + strandat 563.383 kb on + strandat 563.391 kb on - strandat 563.398 kb on + strandat 563.421 kb on + strandat 563.424 kb on + strandat 563.432 kb on - strandat 563.450 kb on - strandat 563.613 kb on + strand, within MPMX20_00541at 563.704 kb on + strand, within MPMX20_00541at 563.737 kb on - strand, within MPMX20_00541at 563.824 kb on + strand, within MPMX20_00541at 563.856 kb on - strand, within MPMX20_00541at 563.928 kb on + strand, within MPMX20_00541at 563.928 kb on + strand, within MPMX20_00541at 563.936 kb on - strand, within MPMX20_00541at 563.936 kb on - strand, within MPMX20_00541at 563.962 kb on + strand, within MPMX20_00541at 563.962 kb on + strand, within MPMX20_00541at 563.962 kb on + strand, within MPMX20_00541at 563.970 kb on - strand, within MPMX20_00541at 563.970 kb on - strand, within MPMX20_00541at 563.998 kb on - strand, within MPMX20_00541at 564.000 kb on + strand, within MPMX20_00541at 564.005 kb on + strand, within MPMX20_00541at 564.008 kb on - strand, within MPMX20_00541at 564.070 kb on + strand, within MPMX20_00541at 564.083 kb on - strand, within MPMX20_00541at 564.093 kb on + strand, within MPMX20_00541at 564.093 kb on + strand, within MPMX20_00541at 564.101 kb on - strand, within MPMX20_00541at 564.101 kb on - strand, within MPMX20_00541at 564.118 kb on + strand, within MPMX20_00541at 564.118 kb on + strand, within MPMX20_00541at 564.126 kb on - strand, within MPMX20_00541

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose plate, 1:1 coculture with Streptomyces_sp._SAI_041
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559,449 + MPMX20_00539 0.37 -1.7
559,462 - MPMX20_00539 0.38 +1.4
559,521 + MPMX20_00539 0.44 +0.4
559,553 + MPMX20_00539 0.48 +1.4
559,555 + MPMX20_00539 0.48 +0.2
559,568 + MPMX20_00539 0.49 -1.0
559,604 - MPMX20_00539 0.53 +0.2
559,606 + MPMX20_00539 0.53 +3.0
559,641 - MPMX20_00539 0.57 -1.7
559,657 - MPMX20_00539 0.59 -1.6
559,679 + MPMX20_00539 0.61 -0.2
559,679 + MPMX20_00539 0.61 -0.3
559,679 + MPMX20_00539 0.61 -0.8
559,708 + MPMX20_00539 0.64 +0.3
559,738 + MPMX20_00539 0.67 -0.6
559,767 + MPMX20_00539 0.70 +2.8
559,775 - MPMX20_00539 0.71 +1.0
559,781 + MPMX20_00539 0.72 -1.7
559,800 + MPMX20_00539 0.74 -0.7
559,808 - MPMX20_00539 0.75 -0.3
559,808 - MPMX20_00539 0.75 -2.0
559,808 - MPMX20_00539 0.75 +1.0
559,909 - MPMX20_00539 0.85 -1.3
560,013 - -0.2
560,057 - -1.4
560,075 - +0.2
560,077 + -2.4
560,077 + -0.3
560,087 + +2.5
560,087 + -0.6
560,087 + -0.8
560,095 - -2.7
560,095 - +1.2
560,102 - -1.9
560,116 + -0.8
560,152 + -1.9
560,154 + -1.7
560,154 + +0.4
560,154 + -1.3
560,154 + +0.7
560,154 + -0.3
560,154 + -1.2
560,154 + -1.2
560,154 + -0.6
560,162 - +0.0
560,162 - -0.6
560,162 - +1.0
560,162 - -0.4
560,162 - +0.4
560,162 - +0.7
560,162 - +0.4
560,162 - -0.6
560,162 - -2.8
560,162 - +2.9
560,162 - -0.7
560,162 - -1.9
560,162 - -1.4
560,162 - +0.2
560,188 + -0.3
560,188 + +0.7
560,194 + -1.4
560,194 + -1.8
560,194 + -0.7
560,195 - -2.8
560,202 - +0.6
560,202 - -1.4
560,202 - -0.9
560,202 - -0.3
560,202 - -1.7
560,242 + +2.9
560,310 - -2.7
560,371 - +1.3
560,489 - -1.9
560,499 + -2.6
560,499 + -1.3
560,507 - -0.0
560,542 - +2.1
560,566 + -2.7
560,566 + -1.6
560,619 + -0.9
560,683 - -2.0
560,711 + -2.6
560,726 + MPMX20_00540 0.11 -0.2
560,734 - MPMX20_00540 0.11 +0.7
560,742 + MPMX20_00540 0.11 -2.9
560,750 - MPMX20_00540 0.11 +0.4
560,761 + MPMX20_00540 0.12 +0.4
560,769 - MPMX20_00540 0.12 -1.3
560,819 + MPMX20_00540 0.14 -2.2
560,842 + MPMX20_00540 0.15 -1.0
560,851 + MPMX20_00540 0.15 +0.2
560,859 - MPMX20_00540 0.15 -3.2
560,877 - MPMX20_00540 0.16 -3.2
560,881 - MPMX20_00540 0.16 -3.7
560,895 + MPMX20_00540 0.17 -3.3
560,959 + MPMX20_00540 0.19 -3.2
560,959 + MPMX20_00540 0.19 -2.4
560,964 + MPMX20_00540 0.19 +1.2
560,964 + MPMX20_00540 0.19 +0.3
560,967 - MPMX20_00540 0.19 -0.0
560,972 - MPMX20_00540 0.20 -2.4
560,972 - MPMX20_00540 0.20 -2.8
561,033 - MPMX20_00540 0.22 -2.5
561,038 + MPMX20_00540 0.22 -0.4
561,065 - MPMX20_00540 0.23 -1.3
561,074 + MPMX20_00540 0.23 -1.8
561,126 + MPMX20_00540 0.25 +0.4
561,134 - MPMX20_00540 0.26 +2.0
561,134 - MPMX20_00540 0.26 -1.3
561,134 - MPMX20_00540 0.26 +0.4
561,179 - MPMX20_00540 0.27 -2.9
561,188 - MPMX20_00540 0.28 +0.2
561,191 - MPMX20_00540 0.28 -2.5
561,235 + MPMX20_00540 0.29 -1.0
561,261 - MPMX20_00540 0.30 -3.5
561,328 + MPMX20_00540 0.33 -0.5
561,374 + MPMX20_00540 0.34 -3.1
561,379 + MPMX20_00540 0.35 -0.6
561,383 - MPMX20_00540 0.35 -2.3
561,425 + MPMX20_00540 0.36 -2.3
561,441 - MPMX20_00540 0.37 -1.1
561,521 + MPMX20_00540 0.40 -2.0
561,523 + MPMX20_00540 0.40 -2.6
561,541 - MPMX20_00540 0.41 -1.3
561,605 - MPMX20_00540 0.43 -0.5
561,647 + MPMX20_00540 0.45 -1.6
561,657 + MPMX20_00540 0.45 -1.9
561,665 - MPMX20_00540 0.45 +3.1
561,672 + MPMX20_00540 0.45 -1.7
561,680 - MPMX20_00540 0.46 -2.5
561,723 - MPMX20_00540 0.47 -3.0
561,723 - MPMX20_00540 0.47 -2.7
561,820 - MPMX20_00540 0.51 -0.5
561,857 + MPMX20_00540 0.52 +0.7
561,889 - MPMX20_00540 0.53 -0.7
561,895 - MPMX20_00540 0.54 +1.6
561,935 - MPMX20_00540 0.55 -2.0
561,972 + MPMX20_00540 0.57 -1.1
561,992 - MPMX20_00540 0.57 -3.0
562,257 - MPMX20_00540 0.67 +2.0
562,264 + MPMX20_00540 0.67 -2.3
562,272 - MPMX20_00540 0.68 -0.7
562,279 + MPMX20_00540 0.68 -0.2
562,315 - MPMX20_00540 0.69 -0.2
562,344 - MPMX20_00540 0.70 -1.3
562,358 - MPMX20_00540 0.71 +0.7
562,389 + MPMX20_00540 0.72 -0.8
562,489 - MPMX20_00540 0.76 -2.6
562,631 + MPMX20_00540 0.81 -1.8
562,640 - MPMX20_00540 0.81 -0.7
562,728 + MPMX20_00540 0.84 -3.9
562,752 + MPMX20_00540 0.85 -0.5
562,760 - MPMX20_00540 0.86 +0.0
562,760 - MPMX20_00540 0.86 -0.6
562,765 - MPMX20_00540 0.86 -2.1
562,772 - MPMX20_00540 0.86 -2.6
562,793 + MPMX20_00540 0.87 -1.2
562,838 + MPMX20_00540 0.88 +0.0
562,863 - MPMX20_00540 0.89 -2.6
562,863 - MPMX20_00540 0.89 -1.4
562,870 + MPMX20_00540 0.90 -2.8
562,945 - -3.1
562,950 - -3.8
562,950 - +0.7
562,995 + -1.8
562,995 + -0.3
563,003 - -3.1
563,003 - -1.8
563,055 + -1.6
563,110 + -0.2
563,110 + -0.5
563,110 + -0.6
563,111 + +3.0
563,111 + +0.1
563,118 - -1.6
563,142 - -2.1
563,212 - -1.5
563,356 - +0.2
563,383 + +0.5
563,383 + +1.7
563,383 + -0.8
563,391 - -0.5
563,398 + -0.5
563,421 + -2.4
563,424 + +1.1
563,432 - -2.0
563,450 - +1.4
563,613 + MPMX20_00541 0.13 +1.6
563,704 + MPMX20_00541 0.17 +0.2
563,737 - MPMX20_00541 0.18 -0.9
563,824 + MPMX20_00541 0.22 +1.2
563,856 - MPMX20_00541 0.23 -2.6
563,928 + MPMX20_00541 0.26 +0.2
563,928 + MPMX20_00541 0.26 -0.2
563,936 - MPMX20_00541 0.27 -0.3
563,936 - MPMX20_00541 0.27 +1.0
563,962 + MPMX20_00541 0.28 +0.9
563,962 + MPMX20_00541 0.28 -1.9
563,962 + MPMX20_00541 0.28 +1.4
563,970 - MPMX20_00541 0.28 +2.5
563,970 - MPMX20_00541 0.28 -0.8
563,998 - MPMX20_00541 0.29 -1.2
564,000 + MPMX20_00541 0.29 -0.6
564,005 + MPMX20_00541 0.30 +1.2
564,008 - MPMX20_00541 0.30 +0.8
564,070 + MPMX20_00541 0.32 +3.4
564,083 - MPMX20_00541 0.33 -1.2
564,093 + MPMX20_00541 0.33 -0.0
564,093 + MPMX20_00541 0.33 -0.9
564,101 - MPMX20_00541 0.34 +1.8
564,101 - MPMX20_00541 0.34 +1.0
564,118 + MPMX20_00541 0.34 -2.2
564,118 + MPMX20_00541 0.34 -0.0
564,126 - MPMX20_00541 0.35 -0.1

Or see this region's nucleotide sequence