Experiment: LB plate, 1:1 coculture with Bacillus_subtilis_TBS_102
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03839 and MPMX20_03840 overlap by 4 nucleotides MPMX20_03840 and MPMX20_03841 are separated by 65 nucleotides MPMX20_03841 and MPMX20_03842 are separated by 213 nucleotides
MPMX20_03839: MPMX20_03839 - Poly-beta-1,6-N-acetyl-D-glucosamine synthase, at 4,044,329 to 4,045,660
_03839
MPMX20_03840: MPMX20_03840 - hypothetical protein, at 4,045,657 to 4,046,088
_03840
MPMX20_03841: MPMX20_03841 - Bifunctional glutathionylspermidine synthetase/amidase, at 4,046,154 to 4,048,016
_03841
MPMX20_03842: MPMX20_03842 - Disulfide-bond oxidoreductase YghU, at 4,048,230 to 4,049,099
_03842
Position (kb)
4046
4047
4048
4049 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 4045.159 kb on + strand, within MPMX20_03839 at 4045.169 kb on - strand, within MPMX20_03839 at 4045.190 kb on + strand, within MPMX20_03839 at 4045.191 kb on - strand, within MPMX20_03839 at 4045.217 kb on + strand, within MPMX20_03839 at 4045.217 kb on + strand, within MPMX20_03839 at 4045.217 kb on + strand, within MPMX20_03839 at 4045.217 kb on + strand, within MPMX20_03839 at 4045.225 kb on - strand, within MPMX20_03839 at 4045.227 kb on + strand, within MPMX20_03839 at 4045.230 kb on - strand, within MPMX20_03839 at 4045.235 kb on - strand, within MPMX20_03839 at 4045.432 kb on + strand, within MPMX20_03839 at 4045.441 kb on + strand, within MPMX20_03839 at 4045.525 kb on + strand, within MPMX20_03839 at 4045.561 kb on + strand at 4045.594 kb on + strand at 4045.614 kb on - strand at 4045.638 kb on + strand at 4045.717 kb on + strand, within MPMX20_03840 at 4045.725 kb on - strand, within MPMX20_03840 at 4045.731 kb on + strand, within MPMX20_03840 at 4045.760 kb on + strand, within MPMX20_03840 at 4045.760 kb on + strand, within MPMX20_03840 at 4045.760 kb on + strand, within MPMX20_03840 at 4045.791 kb on - strand, within MPMX20_03840 at 4045.791 kb on - strand, within MPMX20_03840 at 4045.791 kb on - strand, within MPMX20_03840 at 4045.832 kb on - strand, within MPMX20_03840 at 4045.869 kb on - strand, within MPMX20_03840 at 4045.921 kb on - strand, within MPMX20_03840 at 4045.959 kb on - strand, within MPMX20_03840 at 4045.964 kb on + strand, within MPMX20_03840 at 4045.964 kb on + strand, within MPMX20_03840 at 4045.964 kb on + strand, within MPMX20_03840 at 4045.972 kb on - strand, within MPMX20_03840 at 4045.986 kb on - strand, within MPMX20_03840 at 4046.020 kb on + strand, within MPMX20_03840 at 4046.024 kb on + strand, within MPMX20_03840 at 4046.032 kb on - strand, within MPMX20_03840 at 4046.053 kb on - strand at 4046.065 kb on - strand at 4046.085 kb on - strand at 4046.090 kb on - strand at 4046.122 kb on + strand at 4046.129 kb on + strand at 4046.178 kb on + strand at 4046.219 kb on - strand at 4046.228 kb on + strand at 4046.268 kb on + strand at 4046.268 kb on + strand at 4046.271 kb on - strand at 4046.276 kb on - strand at 4046.276 kb on - strand at 4046.286 kb on + strand at 4046.298 kb on - strand at 4046.304 kb on + strand at 4046.309 kb on - strand at 4046.392 kb on - strand, within MPMX20_03841 at 4046.475 kb on - strand, within MPMX20_03841 at 4046.484 kb on - strand, within MPMX20_03841 at 4046.575 kb on - strand, within MPMX20_03841 at 4046.625 kb on + strand, within MPMX20_03841 at 4046.657 kb on + strand, within MPMX20_03841 at 4046.665 kb on - strand, within MPMX20_03841 at 4046.707 kb on + strand, within MPMX20_03841 at 4046.707 kb on + strand, within MPMX20_03841 at 4046.715 kb on - strand, within MPMX20_03841 at 4046.750 kb on + strand, within MPMX20_03841 at 4046.760 kb on - strand, within MPMX20_03841 at 4046.764 kb on + strand, within MPMX20_03841 at 4046.765 kb on + strand, within MPMX20_03841 at 4046.773 kb on - strand, within MPMX20_03841 at 4046.841 kb on - strand, within MPMX20_03841 at 4046.851 kb on + strand, within MPMX20_03841 at 4046.859 kb on - strand, within MPMX20_03841 at 4047.035 kb on + strand, within MPMX20_03841 at 4047.160 kb on - strand, within MPMX20_03841 at 4047.188 kb on + strand, within MPMX20_03841 at 4047.192 kb on - strand, within MPMX20_03841 at 4047.198 kb on + strand, within MPMX20_03841 at 4047.244 kb on + strand, within MPMX20_03841 at 4047.267 kb on + strand, within MPMX20_03841 at 4047.311 kb on - strand, within MPMX20_03841 at 4047.311 kb on - strand, within MPMX20_03841 at 4047.358 kb on + strand, within MPMX20_03841 at 4047.436 kb on - strand, within MPMX20_03841 at 4047.483 kb on + strand, within MPMX20_03841 at 4047.483 kb on + strand, within MPMX20_03841 at 4047.494 kb on + strand, within MPMX20_03841 at 4047.551 kb on + strand, within MPMX20_03841 at 4047.559 kb on - strand, within MPMX20_03841 at 4047.675 kb on + strand, within MPMX20_03841 at 4047.675 kb on + strand, within MPMX20_03841 at 4047.675 kb on + strand, within MPMX20_03841 at 4047.708 kb on + strand, within MPMX20_03841 at 4047.716 kb on - strand, within MPMX20_03841 at 4047.760 kb on + strand, within MPMX20_03841 at 4047.786 kb on - strand, within MPMX20_03841 at 4047.833 kb on + strand at 4047.833 kb on + strand at 4047.849 kb on + strand at 4047.857 kb on - strand at 4047.914 kb on + strand at 4047.914 kb on + strand at 4047.914 kb on + strand at 4047.914 kb on + strand at 4047.922 kb on - strand at 4047.959 kb on + strand at 4047.967 kb on - strand at 4047.976 kb on + strand at 4047.984 kb on - strand at 4047.994 kb on - strand at 4048.014 kb on + strand at 4048.038 kb on + strand at 4048.047 kb on + strand at 4048.151 kb on + strand at 4048.151 kb on - strand at 4048.177 kb on + strand at 4048.190 kb on + strand at 4048.196 kb on + strand at 4048.206 kb on - strand at 4048.223 kb on + strand at 4048.231 kb on - strand at 4048.257 kb on + strand at 4048.370 kb on + strand, within MPMX20_03842 at 4048.370 kb on + strand, within MPMX20_03842 at 4048.378 kb on - strand, within MPMX20_03842 at 4048.378 kb on - strand, within MPMX20_03842 at 4048.378 kb on - strand, within MPMX20_03842 at 4048.479 kb on + strand, within MPMX20_03842 at 4048.479 kb on + strand, within MPMX20_03842 at 4048.487 kb on - strand, within MPMX20_03842 at 4048.553 kb on + strand, within MPMX20_03842 at 4048.553 kb on + strand, within MPMX20_03842 at 4048.553 kb on + strand, within MPMX20_03842 at 4048.561 kb on - strand, within MPMX20_03842 at 4048.561 kb on - strand, within MPMX20_03842 at 4048.600 kb on - strand, within MPMX20_03842 at 4048.659 kb on + strand, within MPMX20_03842 at 4048.747 kb on - strand, within MPMX20_03842 at 4048.763 kb on - strand, within MPMX20_03842 at 4048.845 kb on - strand, within MPMX20_03842 at 4048.850 kb on - strand, within MPMX20_03842 at 4048.890 kb on + strand, within MPMX20_03842 at 4048.890 kb on + strand, within MPMX20_03842 at 4048.898 kb on - strand, within MPMX20_03842 at 4048.904 kb on + strand, within MPMX20_03842 at 4048.912 kb on - strand, within MPMX20_03842 at 4048.983 kb on + strand, within MPMX20_03842
Per-strain Table
Position Strand Gene LocusTag Fraction LB plate, 1:1 coculture with Bacillus_subtilis_TBS_102 remove 4,045,159 + MPMX20_03839 0.62 -1.0 4,045,169 - MPMX20_03839 0.63 -1.2 4,045,190 + MPMX20_03839 0.65 -0.3 4,045,191 - MPMX20_03839 0.65 +1.4 4,045,217 + MPMX20_03839 0.67 +0.4 4,045,217 + MPMX20_03839 0.67 +0.8 4,045,217 + MPMX20_03839 0.67 -2.2 4,045,217 + MPMX20_03839 0.67 +0.3 4,045,225 - MPMX20_03839 0.67 -2.2 4,045,227 + MPMX20_03839 0.67 -3.7 4,045,230 - MPMX20_03839 0.68 +0.2 4,045,235 - MPMX20_03839 0.68 +0.4 4,045,432 + MPMX20_03839 0.83 -1.2 4,045,441 + MPMX20_03839 0.83 +0.6 4,045,525 + MPMX20_03839 0.90 -0.6 4,045,561 + +1.7 4,045,594 + -0.5 4,045,614 - -2.4 4,045,638 + +4.1 4,045,717 + MPMX20_03840 0.14 -0.9 4,045,725 - MPMX20_03840 0.16 +0.0 4,045,731 + MPMX20_03840 0.17 -1.5 4,045,760 + MPMX20_03840 0.24 -0.6 4,045,760 + MPMX20_03840 0.24 -2.5 4,045,760 + MPMX20_03840 0.24 +1.2 4,045,791 - MPMX20_03840 0.31 +2.0 4,045,791 - MPMX20_03840 0.31 +1.8 4,045,791 - MPMX20_03840 0.31 +0.7 4,045,832 - MPMX20_03840 0.41 +0.5 4,045,869 - MPMX20_03840 0.49 -0.7 4,045,921 - MPMX20_03840 0.61 +0.6 4,045,959 - MPMX20_03840 0.70 -1.1 4,045,964 + MPMX20_03840 0.71 +1.5 4,045,964 + MPMX20_03840 0.71 +1.1 4,045,964 + MPMX20_03840 0.71 -0.0 4,045,972 - MPMX20_03840 0.73 -1.7 4,045,986 - MPMX20_03840 0.76 +0.6 4,046,020 + MPMX20_03840 0.84 +0.5 4,046,024 + MPMX20_03840 0.85 +2.2 4,046,032 - MPMX20_03840 0.87 +0.6 4,046,053 - -0.1 4,046,065 - -1.7 4,046,085 - +0.7 4,046,090 - -2.2 4,046,122 + +0.7 4,046,129 + -0.3 4,046,178 + +4.2 4,046,219 - -2.0 4,046,228 + -0.1 4,046,268 + -0.7 4,046,268 + -0.5 4,046,271 - -0.0 4,046,276 - -1.5 4,046,276 - -1.1 4,046,286 + -0.7 4,046,298 - -3.0 4,046,304 + -3.4 4,046,309 - -3.3 4,046,392 - MPMX20_03841 0.13 +1.1 4,046,475 - MPMX20_03841 0.17 +1.1 4,046,484 - MPMX20_03841 0.18 -2.2 4,046,575 - MPMX20_03841 0.23 +0.8 4,046,625 + MPMX20_03841 0.25 -0.9 4,046,657 + MPMX20_03841 0.27 +1.2 4,046,665 - MPMX20_03841 0.27 +0.3 4,046,707 + MPMX20_03841 0.30 -0.9 4,046,707 + MPMX20_03841 0.30 -0.8 4,046,715 - MPMX20_03841 0.30 -0.8 4,046,750 + MPMX20_03841 0.32 -0.2 4,046,760 - MPMX20_03841 0.33 +0.2 4,046,764 + MPMX20_03841 0.33 +1.1 4,046,765 + MPMX20_03841 0.33 +1.5 4,046,773 - MPMX20_03841 0.33 -1.9 4,046,841 - MPMX20_03841 0.37 +2.4 4,046,851 + MPMX20_03841 0.37 -1.9 4,046,859 - MPMX20_03841 0.38 +1.2 4,047,035 + MPMX20_03841 0.47 +0.7 4,047,160 - MPMX20_03841 0.54 -1.1 4,047,188 + MPMX20_03841 0.56 -0.0 4,047,192 - MPMX20_03841 0.56 -1.4 4,047,198 + MPMX20_03841 0.56 +0.5 4,047,244 + MPMX20_03841 0.59 +1.7 4,047,267 + MPMX20_03841 0.60 +0.0 4,047,311 - MPMX20_03841 0.62 +1.1 4,047,311 - MPMX20_03841 0.62 +1.1 4,047,358 + MPMX20_03841 0.65 -1.6 4,047,436 - MPMX20_03841 0.69 -1.3 4,047,483 + MPMX20_03841 0.71 -1.2 4,047,483 + MPMX20_03841 0.71 +3.7 4,047,494 + MPMX20_03841 0.72 +0.7 4,047,551 + MPMX20_03841 0.75 -0.3 4,047,559 - MPMX20_03841 0.75 +0.7 4,047,675 + MPMX20_03841 0.82 +1.0 4,047,675 + MPMX20_03841 0.82 +0.8 4,047,675 + MPMX20_03841 0.82 +2.4 4,047,708 + MPMX20_03841 0.83 +0.3 4,047,716 - MPMX20_03841 0.84 -0.7 4,047,760 + MPMX20_03841 0.86 +2.6 4,047,786 - MPMX20_03841 0.88 +0.3 4,047,833 + +2.7 4,047,833 + +0.5 4,047,849 + +1.1 4,047,857 - +1.9 4,047,914 + +2.2 4,047,914 + +2.9 4,047,914 + -0.7 4,047,914 + -0.7 4,047,922 - -2.8 4,047,959 + +0.5 4,047,967 - +0.0 4,047,976 + +0.3 4,047,984 - -1.0 4,047,994 - -1.0 4,048,014 + +2.1 4,048,038 + -1.9 4,048,047 + +1.1 4,048,151 + +0.7 4,048,151 - -0.3 4,048,177 + +1.3 4,048,190 + +2.0 4,048,196 + -0.2 4,048,206 - +0.7 4,048,223 + -2.1 4,048,231 - +0.6 4,048,257 + +3.6 4,048,370 + MPMX20_03842 0.16 -0.6 4,048,370 + MPMX20_03842 0.16 -0.5 4,048,378 - MPMX20_03842 0.17 +2.2 4,048,378 - MPMX20_03842 0.17 +0.2 4,048,378 - MPMX20_03842 0.17 -1.1 4,048,479 + MPMX20_03842 0.29 -2.6 4,048,479 + MPMX20_03842 0.29 -1.9 4,048,487 - MPMX20_03842 0.30 -0.6 4,048,553 + MPMX20_03842 0.37 +0.3 4,048,553 + MPMX20_03842 0.37 +0.8 4,048,553 + MPMX20_03842 0.37 -0.1 4,048,561 - MPMX20_03842 0.38 +2.0 4,048,561 - MPMX20_03842 0.38 -1.9 4,048,600 - MPMX20_03842 0.43 +2.3 4,048,659 + MPMX20_03842 0.49 -0.3 4,048,747 - MPMX20_03842 0.59 -1.3 4,048,763 - MPMX20_03842 0.61 -2.3 4,048,845 - MPMX20_03842 0.71 -0.3 4,048,850 - MPMX20_03842 0.71 -0.3 4,048,890 + MPMX20_03842 0.76 +1.0 4,048,890 + MPMX20_03842 0.76 +1.7 4,048,898 - MPMX20_03842 0.77 -1.8 4,048,904 + MPMX20_03842 0.77 -3.0 4,048,912 - MPMX20_03842 0.78 -1.4 4,048,983 + MPMX20_03842 0.87 -0.4
Or see this region's nucleotide sequence