Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03349

Experiment: LB plate, 1:1 coculture with Bacillus_subtilis_TBS_102

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_03347 and MPMX20_03348 are separated by 3 nucleotidesMPMX20_03348 and MPMX20_03349 overlap by 1 nucleotidesMPMX20_03349 and MPMX20_03350 are separated by 56 nucleotidesMPMX20_03350 and MPMX20_03351 are separated by 203 nucleotides MPMX20_03347: MPMX20_03347 - Lichenan permease IIC component, at 3,520,021 to 3,521,340 _03347 MPMX20_03348: MPMX20_03348 - N(4)-(Beta-N-acetylglucosaminyl)-L-asparaginase, at 3,521,344 to 3,522,300 _03348 MPMX20_03349: MPMX20_03349 - cytosol aminopeptidase, at 3,522,300 to 3,523,721 _03349 MPMX20_03350: MPMX20_03350 - DnaA regulatory inactivator Hda, at 3,523,778 to 3,524,371 _03350 MPMX20_03351: MPMX20_03351 - Uracil permease, at 3,524,575 to 3,525,864 _03351 Position (kb) 3522 3523 3524Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 3521.315 kb on + strandat 3521.394 kb on + strandat 3521.458 kb on + strand, within MPMX20_03348at 3521.475 kb on + strand, within MPMX20_03348at 3521.483 kb on - strand, within MPMX20_03348at 3521.677 kb on - strand, within MPMX20_03348at 3521.680 kb on + strand, within MPMX20_03348at 3521.689 kb on - strand, within MPMX20_03348at 3521.733 kb on + strand, within MPMX20_03348at 3521.744 kb on + strand, within MPMX20_03348at 3521.744 kb on + strand, within MPMX20_03348at 3521.764 kb on + strand, within MPMX20_03348at 3521.765 kb on + strand, within MPMX20_03348at 3521.772 kb on - strand, within MPMX20_03348at 3521.772 kb on - strand, within MPMX20_03348at 3521.773 kb on - strand, within MPMX20_03348at 3521.900 kb on + strand, within MPMX20_03348at 3521.938 kb on + strand, within MPMX20_03348at 3521.961 kb on - strand, within MPMX20_03348at 3521.962 kb on - strand, within MPMX20_03348at 3522.009 kb on + strand, within MPMX20_03348at 3522.009 kb on + strand, within MPMX20_03348at 3522.009 kb on + strand, within MPMX20_03348at 3522.121 kb on + strand, within MPMX20_03348at 3522.144 kb on + strand, within MPMX20_03348at 3522.253 kb on + strandat 3522.253 kb on + strandat 3522.258 kb on + strandat 3522.258 kb on + strandat 3522.258 kb on + strandat 3522.266 kb on - strandat 3522.266 kb on - strandat 3522.286 kb on + strandat 3522.315 kb on - strandat 3522.315 kb on - strandat 3522.319 kb on + strandat 3522.341 kb on + strandat 3522.349 kb on - strandat 3522.349 kb on - strandat 3522.381 kb on + strandat 3522.499 kb on + strand, within MPMX20_03349at 3522.502 kb on - strand, within MPMX20_03349at 3522.537 kb on - strand, within MPMX20_03349at 3522.561 kb on - strand, within MPMX20_03349at 3522.561 kb on - strand, within MPMX20_03349at 3522.564 kb on + strand, within MPMX20_03349at 3522.631 kb on + strand, within MPMX20_03349at 3522.639 kb on - strand, within MPMX20_03349at 3522.639 kb on - strand, within MPMX20_03349at 3522.707 kb on - strand, within MPMX20_03349at 3522.717 kb on - strand, within MPMX20_03349at 3522.849 kb on - strand, within MPMX20_03349at 3522.880 kb on - strand, within MPMX20_03349at 3522.911 kb on + strand, within MPMX20_03349at 3522.911 kb on + strand, within MPMX20_03349at 3522.921 kb on - strand, within MPMX20_03349at 3522.950 kb on - strand, within MPMX20_03349at 3522.977 kb on + strand, within MPMX20_03349at 3522.983 kb on + strand, within MPMX20_03349at 3523.023 kb on + strand, within MPMX20_03349at 3523.023 kb on + strand, within MPMX20_03349at 3523.055 kb on + strand, within MPMX20_03349at 3523.068 kb on + strand, within MPMX20_03349at 3523.076 kb on - strand, within MPMX20_03349at 3523.084 kb on + strand, within MPMX20_03349at 3523.117 kb on + strand, within MPMX20_03349at 3523.127 kb on + strand, within MPMX20_03349at 3523.219 kb on - strand, within MPMX20_03349at 3523.219 kb on - strand, within MPMX20_03349at 3523.311 kb on + strand, within MPMX20_03349at 3523.377 kb on + strand, within MPMX20_03349at 3523.466 kb on + strand, within MPMX20_03349at 3523.466 kb on + strand, within MPMX20_03349at 3523.467 kb on - strand, within MPMX20_03349at 3523.467 kb on - strand, within MPMX20_03349at 3523.467 kb on - strand, within MPMX20_03349at 3523.474 kb on - strand, within MPMX20_03349at 3523.519 kb on + strand, within MPMX20_03349at 3523.527 kb on - strand, within MPMX20_03349at 3523.529 kb on + strand, within MPMX20_03349at 3523.529 kb on + strand, within MPMX20_03349at 3523.529 kb on + strand, within MPMX20_03349at 3523.529 kb on + strand, within MPMX20_03349at 3523.537 kb on - strand, within MPMX20_03349at 3523.616 kb on - strandat 3523.646 kb on - strandat 3523.722 kb on + strandat 3523.730 kb on - strandat 3523.740 kb on + strandat 3524.538 kb on + strandat 3524.543 kb on + strandat 3524.546 kb on - strandat 3524.663 kb on - strandat 3524.664 kb on - strandat 3524.713 kb on + strand, within MPMX20_03351at 3524.721 kb on + strand, within MPMX20_03351

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB plate, 1:1 coculture with Bacillus_subtilis_TBS_102
remove
3,521,315 + -3.1
3,521,394 + -0.0
3,521,458 + MPMX20_03348 0.12 +0.9
3,521,475 + MPMX20_03348 0.14 +0.3
3,521,483 - MPMX20_03348 0.15 -1.1
3,521,677 - MPMX20_03348 0.35 -0.0
3,521,680 + MPMX20_03348 0.35 -0.4
3,521,689 - MPMX20_03348 0.36 +0.9
3,521,733 + MPMX20_03348 0.41 +1.2
3,521,744 + MPMX20_03348 0.42 -1.9
3,521,744 + MPMX20_03348 0.42 -0.6
3,521,764 + MPMX20_03348 0.44 +1.3
3,521,765 + MPMX20_03348 0.44 +1.1
3,521,772 - MPMX20_03348 0.45 +2.6
3,521,772 - MPMX20_03348 0.45 -2.6
3,521,773 - MPMX20_03348 0.45 -1.8
3,521,900 + MPMX20_03348 0.58 -3.3
3,521,938 + MPMX20_03348 0.62 +0.8
3,521,961 - MPMX20_03348 0.64 -1.0
3,521,962 - MPMX20_03348 0.65 -1.2
3,522,009 + MPMX20_03348 0.69 +2.3
3,522,009 + MPMX20_03348 0.69 -2.3
3,522,009 + MPMX20_03348 0.69 -1.7
3,522,121 + MPMX20_03348 0.81 -2.4
3,522,144 + MPMX20_03348 0.84 +0.7
3,522,253 + +1.6
3,522,253 + -0.9
3,522,258 + +0.7
3,522,258 + -2.7
3,522,258 + -0.5
3,522,266 - +0.5
3,522,266 - -1.9
3,522,286 + +0.8
3,522,315 - +0.5
3,522,315 - +0.5
3,522,319 + -1.2
3,522,341 + -0.4
3,522,349 - +0.7
3,522,349 - -0.8
3,522,381 + +0.8
3,522,499 + MPMX20_03349 0.14 +1.3
3,522,502 - MPMX20_03349 0.14 -2.1
3,522,537 - MPMX20_03349 0.17 -1.9
3,522,561 - MPMX20_03349 0.18 +0.9
3,522,561 - MPMX20_03349 0.18 -1.8
3,522,564 + MPMX20_03349 0.19 -1.0
3,522,631 + MPMX20_03349 0.23 -3.0
3,522,639 - MPMX20_03349 0.24 -4.5
3,522,639 - MPMX20_03349 0.24 -2.0
3,522,707 - MPMX20_03349 0.29 -0.1
3,522,717 - MPMX20_03349 0.29 +1.1
3,522,849 - MPMX20_03349 0.39 -1.0
3,522,880 - MPMX20_03349 0.41 -0.5
3,522,911 + MPMX20_03349 0.43 -2.2
3,522,911 + MPMX20_03349 0.43 -0.5
3,522,921 - MPMX20_03349 0.44 -3.0
3,522,950 - MPMX20_03349 0.46 +0.7
3,522,977 + MPMX20_03349 0.48 -1.8
3,522,983 + MPMX20_03349 0.48 -2.0
3,523,023 + MPMX20_03349 0.51 +1.1
3,523,023 + MPMX20_03349 0.51 +0.1
3,523,055 + MPMX20_03349 0.53 +2.4
3,523,068 + MPMX20_03349 0.54 -1.3
3,523,076 - MPMX20_03349 0.55 -0.5
3,523,084 + MPMX20_03349 0.55 -3.2
3,523,117 + MPMX20_03349 0.57 -0.5
3,523,127 + MPMX20_03349 0.58 +1.1
3,523,219 - MPMX20_03349 0.65 -1.8
3,523,219 - MPMX20_03349 0.65 -2.8
3,523,311 + MPMX20_03349 0.71 -1.0
3,523,377 + MPMX20_03349 0.76 -0.8
3,523,466 + MPMX20_03349 0.82 -3.6
3,523,466 + MPMX20_03349 0.82 -1.4
3,523,467 - MPMX20_03349 0.82 +0.8
3,523,467 - MPMX20_03349 0.82 +4.3
3,523,467 - MPMX20_03349 0.82 -1.0
3,523,474 - MPMX20_03349 0.83 -0.9
3,523,519 + MPMX20_03349 0.86 -1.1
3,523,527 - MPMX20_03349 0.86 +0.7
3,523,529 + MPMX20_03349 0.86 +0.5
3,523,529 + MPMX20_03349 0.86 +0.4
3,523,529 + MPMX20_03349 0.86 -2.7
3,523,529 + MPMX20_03349 0.86 -0.3
3,523,537 - MPMX20_03349 0.87 -1.0
3,523,616 - -2.5
3,523,646 - +0.3
3,523,722 + -2.0
3,523,730 - +1.9
3,523,740 + +0.1
3,524,538 + +0.5
3,524,543 + -0.5
3,524,546 - -0.3
3,524,663 - +1.3
3,524,664 - -1.8
3,524,713 + MPMX20_03351 0.11 +0.2
3,524,721 + MPMX20_03351 0.11 -2.3

Or see this region's nucleotide sequence