Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00817

Experiment: RCH2_defined_glucose plate, 1:1 coculture with Bacillus_zanthoxyli_TBS_055

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00815 and MPMX20_00816 are separated by 116 nucleotidesMPMX20_00816 and MPMX20_00817 are separated by 67 nucleotidesMPMX20_00817 and MPMX20_00818 are separated by 96 nucleotides MPMX20_00815: MPMX20_00815 - Polyamine aminopropyltransferase, at 857,318 to 858,187 _00815 MPMX20_00816: MPMX20_00816 - hypothetical protein, at 858,304 to 858,690 _00816 MPMX20_00817: MPMX20_00817 - Blue copper oxidase CueO, at 858,758 to 860,356 _00817 MPMX20_00818: MPMX20_00818 - Quinoprotein glucose dehydrogenase, at 860,453 to 862,843 _00818 Position (kb) 858 859 860 861Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6at 857.765 kb on - strand, within MPMX20_00815at 857.811 kb on + strand, within MPMX20_00815at 857.811 kb on + strand, within MPMX20_00815at 857.819 kb on - strand, within MPMX20_00815at 857.828 kb on + strand, within MPMX20_00815at 857.828 kb on + strand, within MPMX20_00815at 857.914 kb on + strand, within MPMX20_00815at 857.922 kb on - strand, within MPMX20_00815at 857.922 kb on - strand, within MPMX20_00815at 857.948 kb on + strand, within MPMX20_00815at 857.974 kb on + strand, within MPMX20_00815at 858.119 kb on - strandat 858.142 kb on - strandat 858.142 kb on - strandat 858.142 kb on - strandat 858.197 kb on + strandat 858.259 kb on - strandat 858.272 kb on + strandat 858.272 kb on + strandat 858.272 kb on + strandat 858.272 kb on + strandat 858.272 kb on + strandat 858.272 kb on + strandat 858.272 kb on + strandat 858.272 kb on + strandat 858.272 kb on + strandat 858.280 kb on - strandat 858.280 kb on - strandat 858.280 kb on - strandat 858.280 kb on - strandat 858.280 kb on - strandat 858.280 kb on - strandat 858.280 kb on - strandat 858.282 kb on + strandat 858.284 kb on + strandat 858.284 kb on + strandat 858.284 kb on + strandat 858.340 kb on + strandat 858.543 kb on - strand, within MPMX20_00816at 858.545 kb on + strand, within MPMX20_00816at 858.564 kb on - strand, within MPMX20_00816at 858.565 kb on - strand, within MPMX20_00816at 858.585 kb on + strand, within MPMX20_00816at 858.585 kb on + strand, within MPMX20_00816at 858.585 kb on + strand, within MPMX20_00816at 858.593 kb on - strand, within MPMX20_00816at 858.595 kb on - strand, within MPMX20_00816at 858.661 kb on - strandat 858.700 kb on - strandat 858.700 kb on - strandat 858.857 kb on + strandat 858.865 kb on - strandat 858.918 kb on + strand, within MPMX20_00817at 858.927 kb on + strand, within MPMX20_00817at 858.928 kb on - strand, within MPMX20_00817at 859.020 kb on + strand, within MPMX20_00817at 859.028 kb on - strand, within MPMX20_00817at 859.033 kb on - strand, within MPMX20_00817at 859.045 kb on - strand, within MPMX20_00817at 859.077 kb on + strand, within MPMX20_00817at 859.101 kb on + strand, within MPMX20_00817at 859.101 kb on + strand, within MPMX20_00817at 859.106 kb on + strand, within MPMX20_00817at 859.115 kb on + strand, within MPMX20_00817at 859.115 kb on - strand, within MPMX20_00817at 859.157 kb on - strand, within MPMX20_00817at 859.187 kb on - strand, within MPMX20_00817at 859.193 kb on - strand, within MPMX20_00817at 859.218 kb on + strand, within MPMX20_00817at 859.229 kb on - strand, within MPMX20_00817at 859.319 kb on - strand, within MPMX20_00817at 859.401 kb on - strand, within MPMX20_00817at 859.436 kb on + strand, within MPMX20_00817at 859.436 kb on - strand, within MPMX20_00817at 859.483 kb on - strand, within MPMX20_00817at 859.491 kb on + strand, within MPMX20_00817at 859.499 kb on - strand, within MPMX20_00817at 859.499 kb on - strand, within MPMX20_00817at 859.504 kb on - strand, within MPMX20_00817at 859.509 kb on - strand, within MPMX20_00817at 859.611 kb on - strand, within MPMX20_00817at 859.635 kb on + strand, within MPMX20_00817at 859.643 kb on - strand, within MPMX20_00817at 859.670 kb on + strand, within MPMX20_00817at 859.681 kb on + strand, within MPMX20_00817at 859.830 kb on + strand, within MPMX20_00817at 859.871 kb on + strand, within MPMX20_00817at 859.944 kb on - strand, within MPMX20_00817at 860.179 kb on + strand, within MPMX20_00817at 860.228 kb on + strandat 860.234 kb on - strandat 860.234 kb on - strandat 860.234 kb on - strandat 860.281 kb on - strandat 860.304 kb on + strandat 860.331 kb on - strandat 860.335 kb on + strandat 860.344 kb on - strandat 860.351 kb on + strandat 860.380 kb on + strandat 860.385 kb on + strandat 860.388 kb on - strandat 860.395 kb on - strandat 860.475 kb on + strandat 860.495 kb on - strandat 860.542 kb on - strandat 860.560 kb on + strandat 860.596 kb on + strandat 860.765 kb on + strand, within MPMX20_00818at 860.765 kb on + strand, within MPMX20_00818at 860.773 kb on - strand, within MPMX20_00818at 860.773 kb on - strand, within MPMX20_00818at 860.836 kb on - strand, within MPMX20_00818at 860.837 kb on - strand, within MPMX20_00818at 860.895 kb on + strand, within MPMX20_00818at 860.895 kb on + strand, within MPMX20_00818at 860.925 kb on - strand, within MPMX20_00818at 860.929 kb on + strand, within MPMX20_00818at 860.952 kb on + strand, within MPMX20_00818at 860.952 kb on + strand, within MPMX20_00818at 860.952 kb on + strand, within MPMX20_00818at 860.952 kb on + strand, within MPMX20_00818at 860.952 kb on + strand, within MPMX20_00818at 860.952 kb on + strand, within MPMX20_00818at 860.952 kb on + strand, within MPMX20_00818at 860.960 kb on - strand, within MPMX20_00818at 860.960 kb on - strand, within MPMX20_00818at 860.965 kb on + strand, within MPMX20_00818at 860.973 kb on - strand, within MPMX20_00818at 860.974 kb on + strand, within MPMX20_00818at 860.983 kb on - strand, within MPMX20_00818at 860.985 kb on + strand, within MPMX20_00818at 861.042 kb on + strand, within MPMX20_00818at 861.044 kb on + strand, within MPMX20_00818at 861.110 kb on - strand, within MPMX20_00818at 861.112 kb on + strand, within MPMX20_00818at 861.120 kb on - strand, within MPMX20_00818at 861.195 kb on + strand, within MPMX20_00818at 861.203 kb on - strand, within MPMX20_00818at 861.236 kb on + strand, within MPMX20_00818at 861.249 kb on - strand, within MPMX20_00818at 861.249 kb on - strand, within MPMX20_00818at 861.330 kb on + strand, within MPMX20_00818

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose plate, 1:1 coculture with Bacillus_zanthoxyli_TBS_055
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857,765 - MPMX20_00815 0.51 -1.2
857,811 + MPMX20_00815 0.57 -0.3
857,811 + MPMX20_00815 0.57 +0.3
857,819 - MPMX20_00815 0.58 -2.0
857,828 + MPMX20_00815 0.59 +0.9
857,828 + MPMX20_00815 0.59 +1.3
857,914 + MPMX20_00815 0.69 -2.0
857,922 - MPMX20_00815 0.69 -0.5
857,922 - MPMX20_00815 0.69 -0.7
857,948 + MPMX20_00815 0.72 -0.3
857,974 + MPMX20_00815 0.75 +0.0
858,119 - -2.2
858,142 - +0.0
858,142 - -0.3
858,142 - +0.3
858,197 + -1.8
858,259 - -0.5
858,272 + -1.6
858,272 + -1.2
858,272 + +1.1
858,272 + -2.3
858,272 + +0.6
858,272 + +0.5
858,272 + +2.0
858,272 + -0.8
858,272 + -2.7
858,280 - -1.6
858,280 - -0.1
858,280 - -1.5
858,280 - +1.7
858,280 - +0.7
858,280 - -1.8
858,280 - +4.3
858,282 + -1.8
858,284 + +2.1
858,284 + +0.3
858,284 + +0.3
858,340 + -1.4
858,543 - MPMX20_00816 0.62 -3.0
858,545 + MPMX20_00816 0.62 -2.6
858,564 - MPMX20_00816 0.67 -0.5
858,565 - MPMX20_00816 0.67 -0.0
858,585 + MPMX20_00816 0.73 -0.6
858,585 + MPMX20_00816 0.73 -1.7
858,585 + MPMX20_00816 0.73 -2.9
858,593 - MPMX20_00816 0.75 +0.4
858,595 - MPMX20_00816 0.75 -1.7
858,661 - -1.0
858,700 - -0.5
858,700 - +3.2
858,857 + -0.6
858,865 - +6.0
858,918 + MPMX20_00817 0.10 +0.1
858,927 + MPMX20_00817 0.11 +1.6
858,928 - MPMX20_00817 0.11 -2.3
859,020 + MPMX20_00817 0.16 -2.9
859,028 - MPMX20_00817 0.17 +2.4
859,033 - MPMX20_00817 0.17 -0.2
859,045 - MPMX20_00817 0.18 -1.0
859,077 + MPMX20_00817 0.20 +0.2
859,101 + MPMX20_00817 0.21 -1.0
859,101 + MPMX20_00817 0.21 -0.6
859,106 + MPMX20_00817 0.22 -1.8
859,115 + MPMX20_00817 0.22 -2.2
859,115 - MPMX20_00817 0.22 +0.5
859,157 - MPMX20_00817 0.25 +1.1
859,187 - MPMX20_00817 0.27 -1.1
859,193 - MPMX20_00817 0.27 +2.2
859,218 + MPMX20_00817 0.29 +0.4
859,229 - MPMX20_00817 0.29 -0.2
859,319 - MPMX20_00817 0.35 +4.4
859,401 - MPMX20_00817 0.40 -1.0
859,436 + MPMX20_00817 0.42 +3.2
859,436 - MPMX20_00817 0.42 -1.8
859,483 - MPMX20_00817 0.45 -1.5
859,491 + MPMX20_00817 0.46 +0.5
859,499 - MPMX20_00817 0.46 -1.2
859,499 - MPMX20_00817 0.46 +2.8
859,504 - MPMX20_00817 0.47 +1.1
859,509 - MPMX20_00817 0.47 -1.8
859,611 - MPMX20_00817 0.53 -2.8
859,635 + MPMX20_00817 0.55 +1.0
859,643 - MPMX20_00817 0.55 -1.3
859,670 + MPMX20_00817 0.57 +3.4
859,681 + MPMX20_00817 0.58 -1.2
859,830 + MPMX20_00817 0.67 -0.8
859,871 + MPMX20_00817 0.70 -0.8
859,944 - MPMX20_00817 0.74 +0.3
860,179 + MPMX20_00817 0.89 -2.0
860,228 + +2.6
860,234 - -3.5
860,234 - -1.0
860,234 - +1.6
860,281 - +0.5
860,304 + -1.1
860,331 - +1.0
860,335 + -0.5
860,344 - +0.5
860,351 + -0.8
860,380 + -1.6
860,385 + +0.0
860,388 - +1.7
860,395 - -0.5
860,475 + +1.8
860,495 - +0.1
860,542 - -2.2
860,560 + +0.6
860,596 + -1.7
860,765 + MPMX20_00818 0.13 -2.7
860,765 + MPMX20_00818 0.13 -1.2
860,773 - MPMX20_00818 0.13 -1.0
860,773 - MPMX20_00818 0.13 +1.9
860,836 - MPMX20_00818 0.16 -0.8
860,837 - MPMX20_00818 0.16 -2.0
860,895 + MPMX20_00818 0.18 -1.7
860,895 + MPMX20_00818 0.18 -0.7
860,925 - MPMX20_00818 0.20 -0.5
860,929 + MPMX20_00818 0.20 +0.9
860,952 + MPMX20_00818 0.21 +0.0
860,952 + MPMX20_00818 0.21 -1.3
860,952 + MPMX20_00818 0.21 -0.6
860,952 + MPMX20_00818 0.21 +0.3
860,952 + MPMX20_00818 0.21 -1.8
860,952 + MPMX20_00818 0.21 -0.3
860,952 + MPMX20_00818 0.21 -3.8
860,960 - MPMX20_00818 0.21 -2.7
860,960 - MPMX20_00818 0.21 -0.1
860,965 + MPMX20_00818 0.21 +0.6
860,973 - MPMX20_00818 0.22 -0.9
860,974 + MPMX20_00818 0.22 -1.0
860,983 - MPMX20_00818 0.22 -0.0
860,985 + MPMX20_00818 0.22 -2.8
861,042 + MPMX20_00818 0.25 -1.4
861,044 + MPMX20_00818 0.25 +1.0
861,110 - MPMX20_00818 0.27 -1.6
861,112 + MPMX20_00818 0.28 +0.1
861,120 - MPMX20_00818 0.28 +2.5
861,195 + MPMX20_00818 0.31 -0.7
861,203 - MPMX20_00818 0.31 -0.7
861,236 + MPMX20_00818 0.33 -0.7
861,249 - MPMX20_00818 0.33 +0.6
861,249 - MPMX20_00818 0.33 -0.3
861,330 + MPMX20_00818 0.37 +0.3

Or see this region's nucleotide sequence