Experiment: TSB plate, 1:1 coculture with Bacillus_pumilus_TBS_103
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04719 and MPMX20_04720 are separated by 49 nucleotides MPMX20_04720 and MPMX20_04721 are separated by 94 nucleotides MPMX20_04721 and MPMX20_04722 are separated by 50 nucleotides MPMX20_04722 and MPMX20_04723 are separated by 566 nucleotides
MPMX20_04719: MPMX20_04719 - hypothetical protein, at 72,066 to 72,899
_04719
MPMX20_04720: MPMX20_04720 - hypothetical protein, at 72,949 to 73,095
_04720
MPMX20_04721: MPMX20_04721 - hypothetical protein, at 73,190 to 73,537
_04721
MPMX20_04722: MPMX20_04722 - hypothetical protein, at 73,588 to 73,962
_04722
MPMX20_04723: MPMX20_04723 - hypothetical protein, at 74,529 to 74,903
_04723
Position (kb) 73
74 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 72.193 kb on - strand, within MPMX20_04719 at 72.198 kb on + strand, within MPMX20_04719 at 72.199 kb on + strand, within MPMX20_04719 at 72.200 kb on + strand, within MPMX20_04719 at 72.205 kb on + strand, within MPMX20_04719 at 72.207 kb on - strand, within MPMX20_04719 at 72.207 kb on - strand, within MPMX20_04719 at 72.210 kb on - strand, within MPMX20_04719 at 72.226 kb on + strand, within MPMX20_04719 at 72.229 kb on - strand, within MPMX20_04719 at 72.229 kb on - strand, within MPMX20_04719 at 72.229 kb on - strand, within MPMX20_04719 at 72.231 kb on - strand, within MPMX20_04719 at 72.234 kb on - strand, within MPMX20_04719 at 72.234 kb on - strand, within MPMX20_04719 at 72.234 kb on - strand, within MPMX20_04719 at 72.236 kb on - strand, within MPMX20_04719 at 72.252 kb on + strand, within MPMX20_04719 at 72.291 kb on + strand, within MPMX20_04719 at 72.292 kb on + strand, within MPMX20_04719 at 72.296 kb on - strand, within MPMX20_04719 at 72.297 kb on + strand, within MPMX20_04719 at 72.308 kb on - strand, within MPMX20_04719 at 72.311 kb on + strand, within MPMX20_04719 at 72.312 kb on + strand, within MPMX20_04719 at 72.312 kb on + strand, within MPMX20_04719 at 72.318 kb on - strand, within MPMX20_04719 at 72.318 kb on - strand, within MPMX20_04719 at 72.319 kb on - strand, within MPMX20_04719 at 72.320 kb on - strand, within MPMX20_04719 at 72.320 kb on - strand, within MPMX20_04719 at 72.320 kb on - strand, within MPMX20_04719 at 72.320 kb on - strand, within MPMX20_04719 at 72.320 kb on - strand, within MPMX20_04719 at 72.320 kb on - strand, within MPMX20_04719 at 72.328 kb on + strand, within MPMX20_04719 at 72.336 kb on - strand, within MPMX20_04719 at 72.338 kb on + strand, within MPMX20_04719 at 72.354 kb on - strand, within MPMX20_04719 at 72.382 kb on - strand, within MPMX20_04719 at 72.387 kb on - strand, within MPMX20_04719 at 72.390 kb on + strand, within MPMX20_04719 at 72.412 kb on + strand, within MPMX20_04719 at 72.435 kb on + strand, within MPMX20_04719 at 72.443 kb on + strand, within MPMX20_04719 at 72.445 kb on + strand, within MPMX20_04719 at 72.445 kb on + strand, within MPMX20_04719 at 72.453 kb on - strand, within MPMX20_04719 at 72.458 kb on - strand, within MPMX20_04719 at 72.458 kb on - strand, within MPMX20_04719 at 72.463 kb on - strand, within MPMX20_04719 at 72.465 kb on - strand, within MPMX20_04719 at 72.467 kb on + strand, within MPMX20_04719 at 72.496 kb on - strand, within MPMX20_04719 at 72.499 kb on + strand, within MPMX20_04719 at 72.507 kb on - strand, within MPMX20_04719 at 72.507 kb on - strand, within MPMX20_04719 at 72.508 kb on - strand, within MPMX20_04719 at 72.514 kb on - strand, within MPMX20_04719 at 72.556 kb on + strand, within MPMX20_04719 at 72.560 kb on + strand, within MPMX20_04719 at 72.560 kb on + strand, within MPMX20_04719 at 72.560 kb on + strand, within MPMX20_04719 at 72.560 kb on + strand, within MPMX20_04719 at 72.560 kb on + strand, within MPMX20_04719 at 72.560 kb on + strand, within MPMX20_04719 at 72.568 kb on - strand, within MPMX20_04719 at 72.568 kb on - strand, within MPMX20_04719 at 72.568 kb on - strand, within MPMX20_04719 at 72.568 kb on - strand, within MPMX20_04719 at 72.568 kb on - strand, within MPMX20_04719 at 72.568 kb on - strand, within MPMX20_04719 at 72.568 kb on - strand, within MPMX20_04719 at 72.568 kb on - strand, within MPMX20_04719 at 72.568 kb on - strand, within MPMX20_04719 at 72.568 kb on - strand, within MPMX20_04719 at 72.579 kb on - strand, within MPMX20_04719 at 72.594 kb on + strand, within MPMX20_04719 at 72.601 kb on + strand, within MPMX20_04719 at 72.602 kb on - strand, within MPMX20_04719 at 72.609 kb on - strand, within MPMX20_04719 at 72.632 kb on + strand, within MPMX20_04719 at 72.632 kb on + strand, within MPMX20_04719 at 72.632 kb on + strand, within MPMX20_04719 at 72.632 kb on + strand, within MPMX20_04719 at 72.634 kb on + strand, within MPMX20_04719 at 72.640 kb on - strand, within MPMX20_04719 at 72.640 kb on - strand, within MPMX20_04719 at 72.640 kb on - strand, within MPMX20_04719 at 72.647 kb on - strand, within MPMX20_04719 at 72.657 kb on - strand, within MPMX20_04719 at 72.699 kb on + strand, within MPMX20_04719 at 72.707 kb on + strand, within MPMX20_04719 at 72.712 kb on - strand, within MPMX20_04719 at 72.715 kb on + strand, within MPMX20_04719 at 72.736 kb on + strand, within MPMX20_04719 at 72.739 kb on - strand, within MPMX20_04719 at 72.744 kb on - strand, within MPMX20_04719 at 72.748 kb on + strand, within MPMX20_04719 at 72.749 kb on - strand, within MPMX20_04719 at 72.763 kb on + strand, within MPMX20_04719 at 72.763 kb on + strand, within MPMX20_04719 at 72.763 kb on + strand, within MPMX20_04719 at 72.771 kb on - strand, within MPMX20_04719 at 72.771 kb on - strand, within MPMX20_04719 at 72.771 kb on - strand, within MPMX20_04719 at 72.776 kb on - strand, within MPMX20_04719 at 72.778 kb on + strand, within MPMX20_04719 at 72.786 kb on + strand, within MPMX20_04719 at 72.786 kb on - strand, within MPMX20_04719 at 72.786 kb on - strand, within MPMX20_04719 at 72.786 kb on - strand, within MPMX20_04719 at 72.786 kb on - strand, within MPMX20_04719 at 72.786 kb on - strand, within MPMX20_04719 at 72.786 kb on - strand, within MPMX20_04719 at 72.791 kb on + strand, within MPMX20_04719 at 72.791 kb on + strand, within MPMX20_04719 at 72.794 kb on - strand, within MPMX20_04719 at 72.796 kb on - strand, within MPMX20_04719 at 72.799 kb on - strand, within MPMX20_04719 at 72.799 kb on - strand, within MPMX20_04719 at 72.855 kb on + strand at 72.863 kb on - strand at 72.867 kb on + strand at 72.875 kb on - strand at 72.875 kb on - strand at 72.885 kb on + strand at 72.934 kb on - strand at 72.956 kb on + strand at 72.958 kb on + strand at 72.958 kb on + strand at 72.958 kb on + strand at 72.958 kb on + strand at 72.958 kb on + strand at 72.958 kb on + strand at 72.958 kb on + strand at 72.958 kb on + strand at 72.964 kb on - strand, within MPMX20_04720 at 72.966 kb on - strand, within MPMX20_04720 at 72.966 kb on - strand, within MPMX20_04720 at 72.968 kb on + strand, within MPMX20_04720 at 72.968 kb on + strand, within MPMX20_04720 at 72.968 kb on + strand, within MPMX20_04720 at 72.976 kb on - strand, within MPMX20_04720 at 72.976 kb on - strand, within MPMX20_04720 at 72.976 kb on - strand, within MPMX20_04720 at 72.980 kb on + strand, within MPMX20_04720 at 72.980 kb on + strand, within MPMX20_04720 at 72.980 kb on + strand, within MPMX20_04720 at 72.980 kb on + strand, within MPMX20_04720 at 72.988 kb on - strand, within MPMX20_04720 at 72.988 kb on - strand, within MPMX20_04720 at 73.005 kb on + strand, within MPMX20_04720 at 73.029 kb on + strand, within MPMX20_04720 at 73.029 kb on + strand, within MPMX20_04720 at 73.037 kb on - strand, within MPMX20_04720 at 73.037 kb on - strand, within MPMX20_04720 at 73.042 kb on - strand, within MPMX20_04720 at 73.047 kb on - strand, within MPMX20_04720 at 73.058 kb on + strand, within MPMX20_04720 at 73.058 kb on + strand, within MPMX20_04720 at 73.172 kb on + strand at 73.172 kb on + strand at 73.172 kb on + strand at 73.172 kb on + strand at 73.172 kb on + strand at 73.172 kb on + strand at 73.172 kb on + strand at 73.216 kb on + strand at 73.216 kb on + strand at 73.216 kb on + strand at 73.226 kb on + strand, within MPMX20_04721 at 73.243 kb on + strand, within MPMX20_04721 at 73.309 kb on + strand, within MPMX20_04721 at 73.334 kb on + strand, within MPMX20_04721 at 73.340 kb on + strand, within MPMX20_04721 at 73.362 kb on + strand, within MPMX20_04721 at 73.398 kb on + strand, within MPMX20_04721 at 73.402 kb on + strand, within MPMX20_04721 at 73.455 kb on + strand, within MPMX20_04721 at 73.490 kb on + strand, within MPMX20_04721 at 73.532 kb on + strand at 73.623 kb on + strand at 73.690 kb on + strand, within MPMX20_04722 at 73.690 kb on + strand, within MPMX20_04722 at 73.732 kb on + strand, within MPMX20_04722 at 73.756 kb on + strand, within MPMX20_04722 at 73.757 kb on + strand, within MPMX20_04722 at 73.767 kb on + strand, within MPMX20_04722 at 73.819 kb on + strand, within MPMX20_04722 at 73.824 kb on + strand, within MPMX20_04722 at 73.834 kb on + strand, within MPMX20_04722 at 73.848 kb on + strand, within MPMX20_04722 at 73.848 kb on + strand, within MPMX20_04722 at 73.848 kb on + strand, within MPMX20_04722 at 73.848 kb on + strand, within MPMX20_04722 at 73.848 kb on + strand, within MPMX20_04722 at 73.890 kb on + strand, within MPMX20_04722 at 74.022 kb on + strand at 74.022 kb on + strand at 74.022 kb on + strand at 74.141 kb on + strand at 74.141 kb on + strand at 74.141 kb on + strand at 74.146 kb on + strand at 74.151 kb on + strand at 74.152 kb on + strand at 74.206 kb on + strand at 74.206 kb on + strand at 74.211 kb on + strand at 74.271 kb on + strand at 74.276 kb on - strand at 74.279 kb on - strand at 74.279 kb on - strand at 74.299 kb on + strand at 74.299 kb on + strand at 74.317 kb on - strand at 74.317 kb on - strand at 74.326 kb on + strand at 74.335 kb on + strand at 74.346 kb on + strand at 74.348 kb on - strand at 74.369 kb on + strand at 74.369 kb on + strand at 74.369 kb on + strand at 74.369 kb on + strand at 74.369 kb on + strand at 74.369 kb on + strand at 74.374 kb on + strand at 74.377 kb on - strand at 74.377 kb on - strand at 74.377 kb on - strand at 74.377 kb on - strand at 74.377 kb on - strand at 74.377 kb on - strand at 74.387 kb on - strand at 74.403 kb on + strand at 74.421 kb on - strand at 74.434 kb on + strand at 74.444 kb on - strand at 74.466 kb on + strand at 74.466 kb on + strand at 74.468 kb on + strand at 74.476 kb on - strand at 74.508 kb on - strand at 74.524 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Bacillus_pumilus_TBS_103 remove 72,193 - MPMX20_04719 0.15 +0.6 72,198 + MPMX20_04719 0.16 -0.8 72,199 + MPMX20_04719 0.16 +0.1 72,200 + MPMX20_04719 0.16 +0.2 72,205 + MPMX20_04719 0.17 +0.7 72,207 - MPMX20_04719 0.17 -1.5 72,207 - MPMX20_04719 0.17 -1.5 72,210 - MPMX20_04719 0.17 -1.2 72,226 + MPMX20_04719 0.19 -1.8 72,229 - MPMX20_04719 0.20 -0.1 72,229 - MPMX20_04719 0.20 -0.5 72,229 - MPMX20_04719 0.20 -1.8 72,231 - MPMX20_04719 0.20 +0.8 72,234 - MPMX20_04719 0.20 -1.7 72,234 - MPMX20_04719 0.20 -0.7 72,234 - MPMX20_04719 0.20 -0.5 72,236 - MPMX20_04719 0.20 +1.5 72,252 + MPMX20_04719 0.22 -0.9 72,291 + MPMX20_04719 0.27 -0.8 72,292 + MPMX20_04719 0.27 -5.2 72,296 - MPMX20_04719 0.28 +0.1 72,297 + MPMX20_04719 0.28 -1.6 72,308 - MPMX20_04719 0.29 +0.1 72,311 + MPMX20_04719 0.29 +0.5 72,312 + MPMX20_04719 0.29 +1.7 72,312 + MPMX20_04719 0.29 -2.7 72,318 - MPMX20_04719 0.30 -1.2 72,318 - MPMX20_04719 0.30 +0.7 72,319 - MPMX20_04719 0.30 -1.8 72,320 - MPMX20_04719 0.30 -0.3 72,320 - MPMX20_04719 0.30 +0.4 72,320 - MPMX20_04719 0.30 -0.5 72,320 - MPMX20_04719 0.30 -2.1 72,320 - MPMX20_04719 0.30 +0.1 72,320 - MPMX20_04719 0.30 +0.7 72,328 + MPMX20_04719 0.31 +0.4 72,336 - MPMX20_04719 0.32 -3.3 72,338 + MPMX20_04719 0.33 +0.9 72,354 - MPMX20_04719 0.35 +0.1 72,382 - MPMX20_04719 0.38 -1.2 72,387 - MPMX20_04719 0.38 -2.1 72,390 + MPMX20_04719 0.39 -1.2 72,412 + MPMX20_04719 0.41 -1.7 72,435 + MPMX20_04719 0.44 -0.9 72,443 + MPMX20_04719 0.45 +0.5 72,445 + MPMX20_04719 0.45 -3.1 72,445 + MPMX20_04719 0.45 -2.4 72,453 - MPMX20_04719 0.46 -0.2 72,458 - MPMX20_04719 0.47 -1.7 72,458 - MPMX20_04719 0.47 -1.5 72,463 - MPMX20_04719 0.48 -2.2 72,465 - MPMX20_04719 0.48 +0.7 72,467 + MPMX20_04719 0.48 -1.9 72,496 - MPMX20_04719 0.52 +0.5 72,499 + MPMX20_04719 0.52 -2.4 72,507 - MPMX20_04719 0.53 +1.1 72,507 - MPMX20_04719 0.53 -1.5 72,508 - MPMX20_04719 0.53 +0.1 72,514 - MPMX20_04719 0.54 +1.6 72,556 + MPMX20_04719 0.59 -1.1 72,560 + MPMX20_04719 0.59 -0.5 72,560 + MPMX20_04719 0.59 +2.1 72,560 + MPMX20_04719 0.59 -0.5 72,560 + MPMX20_04719 0.59 -1.5 72,560 + MPMX20_04719 0.59 -2.8 72,560 + MPMX20_04719 0.59 +1.5 72,568 - MPMX20_04719 0.60 -0.4 72,568 - MPMX20_04719 0.60 -2.3 72,568 - MPMX20_04719 0.60 -2.6 72,568 - MPMX20_04719 0.60 -1.0 72,568 - MPMX20_04719 0.60 -1.5 72,568 - MPMX20_04719 0.60 +0.0 72,568 - MPMX20_04719 0.60 -0.9 72,568 - MPMX20_04719 0.60 -1.5 72,568 - MPMX20_04719 0.60 -0.3 72,568 - MPMX20_04719 0.60 -2.0 72,579 - MPMX20_04719 0.62 +1.1 72,594 + MPMX20_04719 0.63 -0.3 72,601 + MPMX20_04719 0.64 +0.0 72,602 - MPMX20_04719 0.64 -1.1 72,609 - MPMX20_04719 0.65 -0.3 72,632 + MPMX20_04719 0.68 +0.1 72,632 + MPMX20_04719 0.68 -0.9 72,632 + MPMX20_04719 0.68 +1.1 72,632 + MPMX20_04719 0.68 +0.4 72,634 + MPMX20_04719 0.68 -0.4 72,640 - MPMX20_04719 0.69 -1.7 72,640 - MPMX20_04719 0.69 -2.6 72,640 - MPMX20_04719 0.69 +0.9 72,647 - MPMX20_04719 0.70 -1.2 72,657 - MPMX20_04719 0.71 -2.2 72,699 + MPMX20_04719 0.76 -1.2 72,707 + MPMX20_04719 0.77 -0.5 72,712 - MPMX20_04719 0.77 -1.2 72,715 + MPMX20_04719 0.78 +2.4 72,736 + MPMX20_04719 0.80 -2.0 72,739 - MPMX20_04719 0.81 -2.2 72,744 - MPMX20_04719 0.81 -2.4 72,748 + MPMX20_04719 0.82 +0.1 72,749 - MPMX20_04719 0.82 -0.9 72,763 + MPMX20_04719 0.84 +1.2 72,763 + MPMX20_04719 0.84 +0.4 72,763 + MPMX20_04719 0.84 -0.3 72,771 - MPMX20_04719 0.85 +0.5 72,771 - MPMX20_04719 0.85 -3.2 72,771 - MPMX20_04719 0.85 -1.2 72,776 - MPMX20_04719 0.85 +2.6 72,778 + MPMX20_04719 0.85 -2.3 72,786 + MPMX20_04719 0.86 -0.8 72,786 - MPMX20_04719 0.86 -1.9 72,786 - MPMX20_04719 0.86 +1.6 72,786 - MPMX20_04719 0.86 -0.7 72,786 - MPMX20_04719 0.86 -0.7 72,786 - MPMX20_04719 0.86 -2.7 72,786 - MPMX20_04719 0.86 +3.3 72,791 + MPMX20_04719 0.87 -1.5 72,791 + MPMX20_04719 0.87 -2.1 72,794 - MPMX20_04719 0.87 -1.1 72,796 - MPMX20_04719 0.88 -0.9 72,799 - MPMX20_04719 0.88 -1.2 72,799 - MPMX20_04719 0.88 -1.3 72,855 + +1.1 72,863 - +0.3 72,867 + -1.3 72,875 - +0.0 72,875 - +0.3 72,885 + -1.2 72,934 - +0.9 72,956 + +0.2 72,958 + -0.5 72,958 + -0.9 72,958 + -0.1 72,958 + +0.2 72,958 + +0.5 72,958 + +0.3 72,958 + +0.4 72,958 + +4.7 72,964 - MPMX20_04720 0.10 -2.2 72,966 - MPMX20_04720 0.12 -1.9 72,966 - MPMX20_04720 0.12 +0.7 72,968 + MPMX20_04720 0.13 +0.3 72,968 + MPMX20_04720 0.13 +1.9 72,968 + MPMX20_04720 0.13 +1.5 72,976 - MPMX20_04720 0.18 -0.3 72,976 - MPMX20_04720 0.18 +0.4 72,976 - MPMX20_04720 0.18 +0.5 72,980 + MPMX20_04720 0.21 +1.3 72,980 + MPMX20_04720 0.21 +0.4 72,980 + MPMX20_04720 0.21 +1.1 72,980 + MPMX20_04720 0.21 -0.6 72,988 - MPMX20_04720 0.27 +1.5 72,988 - MPMX20_04720 0.27 -1.2 73,005 + MPMX20_04720 0.38 -0.4 73,029 + MPMX20_04720 0.54 -3.3 73,029 + MPMX20_04720 0.54 -1.1 73,037 - MPMX20_04720 0.60 -0.0 73,037 - MPMX20_04720 0.60 +1.1 73,042 - MPMX20_04720 0.63 -3.2 73,047 - MPMX20_04720 0.67 +2.0 73,058 + MPMX20_04720 0.74 -2.7 73,058 + MPMX20_04720 0.74 -1.9 73,172 + -0.4 73,172 + -0.9 73,172 + +1.3 73,172 + -1.9 73,172 + +0.4 73,172 + -0.6 73,172 + -1.9 73,216 + -0.8 73,216 + -0.5 73,216 + -1.9 73,226 + MPMX20_04721 0.10 -1.1 73,243 + MPMX20_04721 0.15 -1.5 73,309 + MPMX20_04721 0.34 -2.2 73,334 + MPMX20_04721 0.41 +1.1 73,340 + MPMX20_04721 0.43 -1.7 73,362 + MPMX20_04721 0.49 -1.9 73,398 + MPMX20_04721 0.60 -2.5 73,402 + MPMX20_04721 0.61 -1.4 73,455 + MPMX20_04721 0.76 -4.3 73,490 + MPMX20_04721 0.86 -3.5 73,532 + -0.9 73,623 + +0.6 73,690 + MPMX20_04722 0.27 +1.1 73,690 + MPMX20_04722 0.27 -0.4 73,732 + MPMX20_04722 0.38 +1.1 73,756 + MPMX20_04722 0.45 -1.9 73,757 + MPMX20_04722 0.45 -1.2 73,767 + MPMX20_04722 0.48 +0.2 73,819 + MPMX20_04722 0.62 +0.3 73,824 + MPMX20_04722 0.63 -2.7 73,834 + MPMX20_04722 0.66 +0.3 73,848 + MPMX20_04722 0.69 -0.6 73,848 + MPMX20_04722 0.69 -3.0 73,848 + MPMX20_04722 0.69 +1.1 73,848 + MPMX20_04722 0.69 -1.4 73,848 + MPMX20_04722 0.69 -1.5 73,890 + MPMX20_04722 0.81 +0.9 74,022 + -0.8 74,022 + +0.4 74,022 + -1.2 74,141 + -2.2 74,141 + -2.5 74,141 + -4.5 74,146 + +0.4 74,151 + -0.9 74,152 + +0.1 74,206 + -0.5 74,206 + +1.1 74,211 + -0.9 74,271 + -1.7 74,276 - -0.1 74,279 - +0.6 74,279 - -1.0 74,299 + +1.4 74,299 + -3.5 74,317 - -2.8 74,317 - -1.7 74,326 + -0.9 74,335 + -1.4 74,346 + -0.0 74,348 - -0.0 74,369 + +0.2 74,369 + -0.7 74,369 + -0.6 74,369 + +0.7 74,369 + +0.9 74,369 + -1.2 74,374 + -0.9 74,377 - -0.6 74,377 - +0.5 74,377 - +0.9 74,377 - -1.3 74,377 - -2.5 74,377 - +1.2 74,387 - -0.6 74,403 + -0.9 74,421 - +1.5 74,434 + +1.1 74,444 - -0.7 74,466 + -2.2 74,466 + -2.1 74,468 + +0.9 74,476 - +1.2 74,508 - -2.5 74,524 - +0.7
Or see this region's nucleotide sequence