Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04519

Experiment: TSB plate, 1:1 coculture with Bacillus_pumilus_TBS_103

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04518 and MPMX20_04519 overlap by 18 nucleotidesMPMX20_04519 and MPMX20_04520 are separated by 324 nucleotides MPMX20_04518: MPMX20_04518 - Soluble pyridine nucleotide transhydrogenase, at 4,725,535 to 4,726,935 _04518 MPMX20_04519: MPMX20_04519 - Hydrogen peroxide-inducible genes activator, at 4,726,918 to 4,727,835 _04519 MPMX20_04520: MPMX20_04520 - Argininosuccinate lyase, at 4,728,160 to 4,729,533 _04520 Position (kb) 4726 4727 4728Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 4725.982 kb on - strand, within MPMX20_04518at 4726.007 kb on + strand, within MPMX20_04518at 4726.015 kb on - strand, within MPMX20_04518at 4726.015 kb on - strand, within MPMX20_04518at 4726.154 kb on - strand, within MPMX20_04518at 4726.198 kb on - strand, within MPMX20_04518at 4726.198 kb on - strand, within MPMX20_04518at 4726.350 kb on + strand, within MPMX20_04518at 4726.418 kb on - strand, within MPMX20_04518at 4726.432 kb on - strand, within MPMX20_04518at 4726.436 kb on - strand, within MPMX20_04518at 4726.438 kb on + strand, within MPMX20_04518at 4726.478 kb on + strand, within MPMX20_04518at 4726.533 kb on + strand, within MPMX20_04518at 4726.541 kb on - strand, within MPMX20_04518at 4726.541 kb on - strand, within MPMX20_04518at 4726.550 kb on + strand, within MPMX20_04518at 4726.558 kb on - strand, within MPMX20_04518at 4726.588 kb on - strand, within MPMX20_04518at 4726.678 kb on - strand, within MPMX20_04518at 4726.843 kb on + strandat 4726.884 kb on + strandat 4726.937 kb on - strandat 4727.018 kb on + strand, within MPMX20_04519at 4727.026 kb on - strand, within MPMX20_04519at 4727.028 kb on + strand, within MPMX20_04519at 4727.028 kb on + strand, within MPMX20_04519at 4727.036 kb on - strand, within MPMX20_04519at 4727.051 kb on + strand, within MPMX20_04519at 4727.059 kb on - strand, within MPMX20_04519at 4727.059 kb on - strand, within MPMX20_04519at 4727.067 kb on + strand, within MPMX20_04519at 4727.347 kb on - strand, within MPMX20_04519at 4727.383 kb on + strand, within MPMX20_04519at 4727.384 kb on + strand, within MPMX20_04519at 4727.392 kb on - strand, within MPMX20_04519at 4727.450 kb on - strand, within MPMX20_04519at 4727.450 kb on - strand, within MPMX20_04519at 4727.466 kb on + strand, within MPMX20_04519at 4727.496 kb on - strand, within MPMX20_04519at 4727.512 kb on - strand, within MPMX20_04519at 4727.523 kb on + strand, within MPMX20_04519at 4727.531 kb on - strand, within MPMX20_04519at 4727.537 kb on - strand, within MPMX20_04519at 4727.547 kb on + strand, within MPMX20_04519at 4727.607 kb on + strand, within MPMX20_04519at 4727.607 kb on + strand, within MPMX20_04519at 4727.635 kb on - strand, within MPMX20_04519at 4727.635 kb on - strand, within MPMX20_04519at 4727.742 kb on + strand, within MPMX20_04519at 4727.750 kb on - strandat 4727.820 kb on - strandat 4727.926 kb on + strandat 4728.143 kb on - strandat 4728.151 kb on - strandat 4728.158 kb on + strandat 4728.166 kb on - strandat 4728.166 kb on - strandat 4728.250 kb on + strandat 4728.281 kb on - strandat 4728.340 kb on - strand, within MPMX20_04520at 4728.350 kb on + strand, within MPMX20_04520at 4728.358 kb on - strand, within MPMX20_04520at 4728.401 kb on - strand, within MPMX20_04520at 4728.435 kb on + strand, within MPMX20_04520at 4728.445 kb on + strand, within MPMX20_04520at 4728.445 kb on + strand, within MPMX20_04520at 4728.509 kb on + strand, within MPMX20_04520at 4728.509 kb on + strand, within MPMX20_04520at 4728.560 kb on - strand, within MPMX20_04520at 4728.630 kb on - strand, within MPMX20_04520at 4728.631 kb on + strand, within MPMX20_04520at 4728.671 kb on - strand, within MPMX20_04520at 4728.713 kb on - strand, within MPMX20_04520at 4728.714 kb on - strand, within MPMX20_04520at 4728.755 kb on - strand, within MPMX20_04520at 4728.800 kb on - strand, within MPMX20_04520

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Bacillus_pumilus_TBS_103
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4,725,982 - MPMX20_04518 0.32 -1.6
4,726,007 + MPMX20_04518 0.34 -1.5
4,726,015 - MPMX20_04518 0.34 -1.5
4,726,015 - MPMX20_04518 0.34 +2.6
4,726,154 - MPMX20_04518 0.44 +0.3
4,726,198 - MPMX20_04518 0.47 -2.1
4,726,198 - MPMX20_04518 0.47 +0.3
4,726,350 + MPMX20_04518 0.58 -1.0
4,726,418 - MPMX20_04518 0.63 -0.2
4,726,432 - MPMX20_04518 0.64 +1.6
4,726,436 - MPMX20_04518 0.64 +2.6
4,726,438 + MPMX20_04518 0.64 +2.6
4,726,478 + MPMX20_04518 0.67 +0.3
4,726,533 + MPMX20_04518 0.71 -1.4
4,726,541 - MPMX20_04518 0.72 +0.6
4,726,541 - MPMX20_04518 0.72 +0.6
4,726,550 + MPMX20_04518 0.72 -0.4
4,726,558 - MPMX20_04518 0.73 -0.4
4,726,588 - MPMX20_04518 0.75 +1.6
4,726,678 - MPMX20_04518 0.82 -2.1
4,726,843 + -2.1
4,726,884 + +0.6
4,726,937 - -2.2
4,727,018 + MPMX20_04519 0.11 -0.6
4,727,026 - MPMX20_04519 0.12 -1.6
4,727,028 + MPMX20_04519 0.12 -1.6
4,727,028 + MPMX20_04519 0.12 -1.1
4,727,036 - MPMX20_04519 0.13 -4.3
4,727,051 + MPMX20_04519 0.14 -3.3
4,727,059 - MPMX20_04519 0.15 -4.7
4,727,059 - MPMX20_04519 0.15 -0.9
4,727,067 + MPMX20_04519 0.16 -0.2
4,727,347 - MPMX20_04519 0.47 -3.3
4,727,383 + MPMX20_04519 0.51 -2.1
4,727,384 + MPMX20_04519 0.51 -1.7
4,727,392 - MPMX20_04519 0.52 -3.4
4,727,450 - MPMX20_04519 0.58 -1.7
4,727,450 - MPMX20_04519 0.58 +0.6
4,727,466 + MPMX20_04519 0.60 -3.0
4,727,496 - MPMX20_04519 0.63 -0.9
4,727,512 - MPMX20_04519 0.65 -1.4
4,727,523 + MPMX20_04519 0.66 -2.6
4,727,531 - MPMX20_04519 0.67 -5.2
4,727,537 - MPMX20_04519 0.67 -2.7
4,727,547 + MPMX20_04519 0.69 +0.6
4,727,607 + MPMX20_04519 0.75 -2.8
4,727,607 + MPMX20_04519 0.75 -2.6
4,727,635 - MPMX20_04519 0.78 -2.3
4,727,635 - MPMX20_04519 0.78 -3.7
4,727,742 + MPMX20_04519 0.90 +1.0
4,727,750 - -1.6
4,727,820 - -1.3
4,727,926 + -0.7
4,728,143 - -0.9
4,728,151 - +1.6
4,728,158 + -0.6
4,728,166 - +0.0
4,728,166 - -0.7
4,728,250 + -0.9
4,728,281 - -1.9
4,728,340 - MPMX20_04520 0.13 -0.7
4,728,350 + MPMX20_04520 0.14 -1.0
4,728,358 - MPMX20_04520 0.14 -0.7
4,728,401 - MPMX20_04520 0.18 -0.5
4,728,435 + MPMX20_04520 0.20 +2.6
4,728,445 + MPMX20_04520 0.21 -0.9
4,728,445 + MPMX20_04520 0.21 -3.4
4,728,509 + MPMX20_04520 0.25 -1.6
4,728,509 + MPMX20_04520 0.25 +1.0
4,728,560 - MPMX20_04520 0.29 +1.1
4,728,630 - MPMX20_04520 0.34 -0.1
4,728,631 + MPMX20_04520 0.34 +1.1
4,728,671 - MPMX20_04520 0.37 -1.7
4,728,713 - MPMX20_04520 0.40 +1.3
4,728,714 - MPMX20_04520 0.40 -2.0
4,728,755 - MPMX20_04520 0.43 -0.1
4,728,800 - MPMX20_04520 0.47 -0.9

Or see this region's nucleotide sequence