Experiment: TSB plate, 1:1 coculture with Bacillus_pumilus_TBS_103
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04518 and MPMX20_04519 overlap by 18 nucleotides MPMX20_04519 and MPMX20_04520 are separated by 324 nucleotides
MPMX20_04518: MPMX20_04518 - Soluble pyridine nucleotide transhydrogenase, at 4,725,535 to 4,726,935
_04518
MPMX20_04519: MPMX20_04519 - Hydrogen peroxide-inducible genes activator, at 4,726,918 to 4,727,835
_04519
MPMX20_04520: MPMX20_04520 - Argininosuccinate lyase, at 4,728,160 to 4,729,533
_04520
Position (kb)
4726
4727
4728 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 4725.982 kb on - strand, within MPMX20_04518 at 4726.007 kb on + strand, within MPMX20_04518 at 4726.015 kb on - strand, within MPMX20_04518 at 4726.015 kb on - strand, within MPMX20_04518 at 4726.154 kb on - strand, within MPMX20_04518 at 4726.198 kb on - strand, within MPMX20_04518 at 4726.198 kb on - strand, within MPMX20_04518 at 4726.350 kb on + strand, within MPMX20_04518 at 4726.418 kb on - strand, within MPMX20_04518 at 4726.432 kb on - strand, within MPMX20_04518 at 4726.436 kb on - strand, within MPMX20_04518 at 4726.438 kb on + strand, within MPMX20_04518 at 4726.478 kb on + strand, within MPMX20_04518 at 4726.533 kb on + strand, within MPMX20_04518 at 4726.541 kb on - strand, within MPMX20_04518 at 4726.541 kb on - strand, within MPMX20_04518 at 4726.550 kb on + strand, within MPMX20_04518 at 4726.558 kb on - strand, within MPMX20_04518 at 4726.588 kb on - strand, within MPMX20_04518 at 4726.678 kb on - strand, within MPMX20_04518 at 4726.843 kb on + strand at 4726.884 kb on + strand at 4726.937 kb on - strand at 4727.018 kb on + strand, within MPMX20_04519 at 4727.026 kb on - strand, within MPMX20_04519 at 4727.028 kb on + strand, within MPMX20_04519 at 4727.028 kb on + strand, within MPMX20_04519 at 4727.036 kb on - strand, within MPMX20_04519 at 4727.051 kb on + strand, within MPMX20_04519 at 4727.059 kb on - strand, within MPMX20_04519 at 4727.059 kb on - strand, within MPMX20_04519 at 4727.067 kb on + strand, within MPMX20_04519 at 4727.347 kb on - strand, within MPMX20_04519 at 4727.383 kb on + strand, within MPMX20_04519 at 4727.384 kb on + strand, within MPMX20_04519 at 4727.392 kb on - strand, within MPMX20_04519 at 4727.450 kb on - strand, within MPMX20_04519 at 4727.450 kb on - strand, within MPMX20_04519 at 4727.466 kb on + strand, within MPMX20_04519 at 4727.496 kb on - strand, within MPMX20_04519 at 4727.512 kb on - strand, within MPMX20_04519 at 4727.523 kb on + strand, within MPMX20_04519 at 4727.531 kb on - strand, within MPMX20_04519 at 4727.537 kb on - strand, within MPMX20_04519 at 4727.547 kb on + strand, within MPMX20_04519 at 4727.607 kb on + strand, within MPMX20_04519 at 4727.607 kb on + strand, within MPMX20_04519 at 4727.635 kb on - strand, within MPMX20_04519 at 4727.635 kb on - strand, within MPMX20_04519 at 4727.742 kb on + strand, within MPMX20_04519 at 4727.750 kb on - strand at 4727.820 kb on - strand at 4727.926 kb on + strand at 4728.143 kb on - strand at 4728.151 kb on - strand at 4728.158 kb on + strand at 4728.166 kb on - strand at 4728.166 kb on - strand at 4728.250 kb on + strand at 4728.281 kb on - strand at 4728.340 kb on - strand, within MPMX20_04520 at 4728.350 kb on + strand, within MPMX20_04520 at 4728.358 kb on - strand, within MPMX20_04520 at 4728.401 kb on - strand, within MPMX20_04520 at 4728.435 kb on + strand, within MPMX20_04520 at 4728.445 kb on + strand, within MPMX20_04520 at 4728.445 kb on + strand, within MPMX20_04520 at 4728.509 kb on + strand, within MPMX20_04520 at 4728.509 kb on + strand, within MPMX20_04520 at 4728.560 kb on - strand, within MPMX20_04520 at 4728.630 kb on - strand, within MPMX20_04520 at 4728.631 kb on + strand, within MPMX20_04520 at 4728.671 kb on - strand, within MPMX20_04520 at 4728.713 kb on - strand, within MPMX20_04520 at 4728.714 kb on - strand, within MPMX20_04520 at 4728.755 kb on - strand, within MPMX20_04520 at 4728.800 kb on - strand, within MPMX20_04520
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Bacillus_pumilus_TBS_103 remove 4,725,982 - MPMX20_04518 0.32 -1.6 4,726,007 + MPMX20_04518 0.34 -1.5 4,726,015 - MPMX20_04518 0.34 -1.5 4,726,015 - MPMX20_04518 0.34 +2.6 4,726,154 - MPMX20_04518 0.44 +0.3 4,726,198 - MPMX20_04518 0.47 -2.1 4,726,198 - MPMX20_04518 0.47 +0.3 4,726,350 + MPMX20_04518 0.58 -1.0 4,726,418 - MPMX20_04518 0.63 -0.2 4,726,432 - MPMX20_04518 0.64 +1.6 4,726,436 - MPMX20_04518 0.64 +2.6 4,726,438 + MPMX20_04518 0.64 +2.6 4,726,478 + MPMX20_04518 0.67 +0.3 4,726,533 + MPMX20_04518 0.71 -1.4 4,726,541 - MPMX20_04518 0.72 +0.6 4,726,541 - MPMX20_04518 0.72 +0.6 4,726,550 + MPMX20_04518 0.72 -0.4 4,726,558 - MPMX20_04518 0.73 -0.4 4,726,588 - MPMX20_04518 0.75 +1.6 4,726,678 - MPMX20_04518 0.82 -2.1 4,726,843 + -2.1 4,726,884 + +0.6 4,726,937 - -2.2 4,727,018 + MPMX20_04519 0.11 -0.6 4,727,026 - MPMX20_04519 0.12 -1.6 4,727,028 + MPMX20_04519 0.12 -1.6 4,727,028 + MPMX20_04519 0.12 -1.1 4,727,036 - MPMX20_04519 0.13 -4.3 4,727,051 + MPMX20_04519 0.14 -3.3 4,727,059 - MPMX20_04519 0.15 -4.7 4,727,059 - MPMX20_04519 0.15 -0.9 4,727,067 + MPMX20_04519 0.16 -0.2 4,727,347 - MPMX20_04519 0.47 -3.3 4,727,383 + MPMX20_04519 0.51 -2.1 4,727,384 + MPMX20_04519 0.51 -1.7 4,727,392 - MPMX20_04519 0.52 -3.4 4,727,450 - MPMX20_04519 0.58 -1.7 4,727,450 - MPMX20_04519 0.58 +0.6 4,727,466 + MPMX20_04519 0.60 -3.0 4,727,496 - MPMX20_04519 0.63 -0.9 4,727,512 - MPMX20_04519 0.65 -1.4 4,727,523 + MPMX20_04519 0.66 -2.6 4,727,531 - MPMX20_04519 0.67 -5.2 4,727,537 - MPMX20_04519 0.67 -2.7 4,727,547 + MPMX20_04519 0.69 +0.6 4,727,607 + MPMX20_04519 0.75 -2.8 4,727,607 + MPMX20_04519 0.75 -2.6 4,727,635 - MPMX20_04519 0.78 -2.3 4,727,635 - MPMX20_04519 0.78 -3.7 4,727,742 + MPMX20_04519 0.90 +1.0 4,727,750 - -1.6 4,727,820 - -1.3 4,727,926 + -0.7 4,728,143 - -0.9 4,728,151 - +1.6 4,728,158 + -0.6 4,728,166 - +0.0 4,728,166 - -0.7 4,728,250 + -0.9 4,728,281 - -1.9 4,728,340 - MPMX20_04520 0.13 -0.7 4,728,350 + MPMX20_04520 0.14 -1.0 4,728,358 - MPMX20_04520 0.14 -0.7 4,728,401 - MPMX20_04520 0.18 -0.5 4,728,435 + MPMX20_04520 0.20 +2.6 4,728,445 + MPMX20_04520 0.21 -0.9 4,728,445 + MPMX20_04520 0.21 -3.4 4,728,509 + MPMX20_04520 0.25 -1.6 4,728,509 + MPMX20_04520 0.25 +1.0 4,728,560 - MPMX20_04520 0.29 +1.1 4,728,630 - MPMX20_04520 0.34 -0.1 4,728,631 + MPMX20_04520 0.34 +1.1 4,728,671 - MPMX20_04520 0.37 -1.7 4,728,713 - MPMX20_04520 0.40 +1.3 4,728,714 - MPMX20_04520 0.40 -2.0 4,728,755 - MPMX20_04520 0.43 -0.1 4,728,800 - MPMX20_04520 0.47 -0.9
Or see this region's nucleotide sequence