Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04008

Experiment: TSB plate, 1:1 coculture with Bacillus_pumilus_TBS_103

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_04005 and MPMX20_04006 are separated by 143 nucleotidesMPMX20_04006 and MPMX20_04007 are separated by 29 nucleotidesMPMX20_04007 and MPMX20_04008 are separated by 1 nucleotidesMPMX20_04008 and MPMX20_04009 overlap by 4 nucleotidesMPMX20_04009 and MPMX20_04010 are separated by 209 nucleotidesMPMX20_04010 and MPMX20_04011 are separated by 72 nucleotides MPMX20_04005: MPMX20_04005 - Modulator protein MzrA, at 4,204,176 to 4,204,559 _04005 MPMX20_04006: MPMX20_04006 - Protein YqjC, at 4,204,703 to 4,205,071 _04006 MPMX20_04007: MPMX20_04007 - putative protein YqjD, at 4,205,101 to 4,205,406 _04007 MPMX20_04008: MPMX20_04008 - Inner membrane protein YqjE, at 4,205,408 to 4,205,806 _04008 MPMX20_04009: MPMX20_04009 - hypothetical protein, at 4,205,803 to 4,206,099 _04009 MPMX20_04010: MPMX20_04010 - Inner membrane protein YqjF, at 4,206,309 to 4,206,701 _04010 MPMX20_04011: MPMX20_04011 - Glutathionyl-hydroquinone reductase YqjG, at 4,206,774 to 4,207,760 _04011 Position (kb) 4205 4206Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4204.456 kb on + strand, within MPMX20_04005at 4204.464 kb on - strand, within MPMX20_04005at 4204.464 kb on - strand, within MPMX20_04005at 4204.474 kb on + strand, within MPMX20_04005at 4204.475 kb on - strand, within MPMX20_04005at 4204.480 kb on - strand, within MPMX20_04005at 4204.482 kb on - strand, within MPMX20_04005at 4204.508 kb on + strand, within MPMX20_04005at 4204.633 kb on - strandat 4204.635 kb on + strandat 4204.657 kb on + strandat 4204.665 kb on - strandat 4204.685 kb on - strandat 4204.718 kb on + strandat 4204.839 kb on + strand, within MPMX20_04006at 4204.847 kb on - strand, within MPMX20_04006at 4204.847 kb on - strand, within MPMX20_04006at 4204.847 kb on - strand, within MPMX20_04006at 4204.847 kb on - strand, within MPMX20_04006at 4204.884 kb on + strand, within MPMX20_04006at 4204.897 kb on + strand, within MPMX20_04006at 4205.020 kb on + strand, within MPMX20_04006at 4205.110 kb on + strandat 4205.167 kb on - strand, within MPMX20_04007at 4205.167 kb on - strand, within MPMX20_04007at 4205.228 kb on - strand, within MPMX20_04007at 4205.228 kb on - strand, within MPMX20_04007at 4205.252 kb on + strand, within MPMX20_04007at 4205.252 kb on + strand, within MPMX20_04007at 4205.252 kb on + strand, within MPMX20_04007at 4205.287 kb on + strand, within MPMX20_04007at 4205.355 kb on + strand, within MPMX20_04007at 4205.355 kb on - strand, within MPMX20_04007at 4205.361 kb on - strand, within MPMX20_04007at 4205.380 kb on - strandat 4205.380 kb on - strandat 4205.482 kb on + strand, within MPMX20_04008at 4205.531 kb on - strand, within MPMX20_04008at 4205.565 kb on + strand, within MPMX20_04008at 4205.576 kb on + strand, within MPMX20_04008at 4205.615 kb on + strand, within MPMX20_04008at 4205.762 kb on + strand, within MPMX20_04008at 4205.770 kb on - strandat 4205.793 kb on - strandat 4205.793 kb on - strandat 4205.816 kb on - strandat 4205.905 kb on - strand, within MPMX20_04009at 4205.927 kb on + strand, within MPMX20_04009at 4205.939 kb on + strand, within MPMX20_04009at 4205.954 kb on + strand, within MPMX20_04009at 4205.954 kb on + strand, within MPMX20_04009at 4205.973 kb on - strand, within MPMX20_04009at 4205.975 kb on + strand, within MPMX20_04009at 4206.129 kb on - strandat 4206.443 kb on - strand, within MPMX20_04010at 4206.522 kb on + strand, within MPMX20_04010at 4206.527 kb on + strand, within MPMX20_04010at 4206.537 kb on + strand, within MPMX20_04010at 4206.541 kb on + strand, within MPMX20_04010at 4206.545 kb on - strand, within MPMX20_04010at 4206.585 kb on + strand, within MPMX20_04010at 4206.593 kb on - strand, within MPMX20_04010at 4206.631 kb on + strand, within MPMX20_04010at 4206.644 kb on + strand, within MPMX20_04010at 4206.654 kb on + strand, within MPMX20_04010at 4206.655 kb on + strand, within MPMX20_04010at 4206.704 kb on + strandat 4206.717 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Bacillus_pumilus_TBS_103
remove
4,204,456 + MPMX20_04005 0.73 +1.1
4,204,464 - MPMX20_04005 0.75 +1.1
4,204,464 - MPMX20_04005 0.75 +1.9
4,204,474 + MPMX20_04005 0.78 +2.7
4,204,475 - MPMX20_04005 0.78 +1.7
4,204,480 - MPMX20_04005 0.79 +0.0
4,204,482 - MPMX20_04005 0.80 +1.1
4,204,508 + MPMX20_04005 0.86 -1.3
4,204,633 - -1.3
4,204,635 + +0.7
4,204,657 + -0.1
4,204,665 - +1.1
4,204,685 - -0.6
4,204,718 + +0.2
4,204,839 + MPMX20_04006 0.37 -1.6
4,204,847 - MPMX20_04006 0.39 -1.2
4,204,847 - MPMX20_04006 0.39 -3.6
4,204,847 - MPMX20_04006 0.39 -0.3
4,204,847 - MPMX20_04006 0.39 +3.7
4,204,884 + MPMX20_04006 0.49 +1.3
4,204,897 + MPMX20_04006 0.53 +0.1
4,205,020 + MPMX20_04006 0.86 +0.0
4,205,110 + -0.5
4,205,167 - MPMX20_04007 0.22 +1.5
4,205,167 - MPMX20_04007 0.22 -1.0
4,205,228 - MPMX20_04007 0.42 -2.0
4,205,228 - MPMX20_04007 0.42 -1.0
4,205,252 + MPMX20_04007 0.49 +2.4
4,205,252 + MPMX20_04007 0.49 -0.9
4,205,252 + MPMX20_04007 0.49 -1.8
4,205,287 + MPMX20_04007 0.61 -1.9
4,205,355 + MPMX20_04007 0.83 +1.4
4,205,355 - MPMX20_04007 0.83 -1.5
4,205,361 - MPMX20_04007 0.85 +0.0
4,205,380 - -0.0
4,205,380 - -3.2
4,205,482 + MPMX20_04008 0.19 +0.3
4,205,531 - MPMX20_04008 0.31 -2.6
4,205,565 + MPMX20_04008 0.39 -2.4
4,205,576 + MPMX20_04008 0.42 -0.5
4,205,615 + MPMX20_04008 0.52 -1.1
4,205,762 + MPMX20_04008 0.89 -1.0
4,205,770 - -1.2
4,205,793 - -0.6
4,205,793 - +3.4
4,205,816 - +0.8
4,205,905 - MPMX20_04009 0.34 -1.5
4,205,927 + MPMX20_04009 0.42 +1.7
4,205,939 + MPMX20_04009 0.46 -0.5
4,205,954 + MPMX20_04009 0.51 +0.0
4,205,954 + MPMX20_04009 0.51 +0.9
4,205,973 - MPMX20_04009 0.57 -1.6
4,205,975 + MPMX20_04009 0.58 +2.6
4,206,129 - +0.1
4,206,443 - MPMX20_04010 0.34 +0.8
4,206,522 + MPMX20_04010 0.54 -0.3
4,206,527 + MPMX20_04010 0.55 +0.3
4,206,537 + MPMX20_04010 0.58 +2.1
4,206,541 + MPMX20_04010 0.59 -2.7
4,206,545 - MPMX20_04010 0.60 -1.5
4,206,585 + MPMX20_04010 0.70 -0.5
4,206,593 - MPMX20_04010 0.72 +1.0
4,206,631 + MPMX20_04010 0.82 -0.9
4,206,644 + MPMX20_04010 0.85 -1.0
4,206,654 + MPMX20_04010 0.88 -0.4
4,206,655 + MPMX20_04010 0.88 +2.1
4,206,704 + +0.2
4,206,717 - -0.2

Or see this region's nucleotide sequence