Experiment: TSB plate, 1:1 coculture with Bacillus_pumilus_TBS_103
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01272 and MPMX20_01273 are separated by 59 nucleotides MPMX20_01273 and MPMX20_01274 are separated by 180 nucleotides
MPMX20_01272: MPMX20_01272 - Alkyl hydroperoxide reductase subunit F, at 1,336,250 to 1,337,815
_01272
MPMX20_01273: MPMX20_01273 - Universal stress protein UP12, at 1,337,875 to 1,338,303
_01273
MPMX20_01274: MPMX20_01274 - putative zinc-binding alcohol dehydrogenase, at 1,338,484 to 1,339,722
_01274
Position (kb)
1337
1338
1339 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1336.878 kb on - strand, within MPMX20_01272 at 1336.941 kb on - strand, within MPMX20_01272 at 1336.994 kb on + strand, within MPMX20_01272 at 1337.002 kb on - strand, within MPMX20_01272 at 1337.028 kb on - strand, within MPMX20_01272 at 1337.032 kb on + strand, within MPMX20_01272 at 1337.061 kb on + strand, within MPMX20_01272 at 1337.151 kb on + strand, within MPMX20_01272 at 1337.151 kb on + strand, within MPMX20_01272 at 1337.159 kb on - strand, within MPMX20_01272 at 1337.199 kb on + strand, within MPMX20_01272 at 1337.271 kb on - strand, within MPMX20_01272 at 1337.271 kb on - strand, within MPMX20_01272 at 1337.305 kb on + strand, within MPMX20_01272 at 1337.313 kb on - strand, within MPMX20_01272 at 1337.313 kb on - strand, within MPMX20_01272 at 1337.313 kb on - strand, within MPMX20_01272 at 1337.402 kb on - strand, within MPMX20_01272 at 1337.434 kb on - strand, within MPMX20_01272 at 1337.497 kb on + strand, within MPMX20_01272 at 1337.526 kb on + strand, within MPMX20_01272 at 1337.526 kb on + strand, within MPMX20_01272 at 1337.526 kb on + strand, within MPMX20_01272 at 1337.534 kb on - strand, within MPMX20_01272 at 1337.621 kb on - strand, within MPMX20_01272 at 1337.659 kb on - strand at 1337.698 kb on + strand at 1337.705 kb on + strand at 1337.708 kb on + strand at 1337.718 kb on + strand at 1337.723 kb on + strand at 1337.761 kb on - strand at 1337.771 kb on + strand at 1337.851 kb on - strand at 1337.853 kb on + strand at 1337.862 kb on - strand at 1337.925 kb on + strand, within MPMX20_01273 at 1338.004 kb on - strand, within MPMX20_01273 at 1338.056 kb on + strand, within MPMX20_01273 at 1338.057 kb on + strand, within MPMX20_01273 at 1338.206 kb on + strand, within MPMX20_01273 at 1338.246 kb on - strand, within MPMX20_01273 at 1338.258 kb on + strand, within MPMX20_01273 at 1338.432 kb on + strand at 1338.432 kb on + strand at 1338.441 kb on + strand at 1338.448 kb on + strand at 1338.458 kb on - strand at 1338.460 kb on + strand at 1338.460 kb on + strand at 1338.460 kb on + strand at 1338.468 kb on - strand at 1338.553 kb on - strand at 1338.563 kb on + strand at 1338.576 kb on + strand at 1338.576 kb on + strand at 1338.613 kb on - strand, within MPMX20_01274 at 1338.645 kb on - strand, within MPMX20_01274 at 1338.688 kb on - strand, within MPMX20_01274 at 1338.736 kb on - strand, within MPMX20_01274 at 1338.806 kb on + strand, within MPMX20_01274 at 1338.806 kb on + strand, within MPMX20_01274 at 1338.809 kb on - strand, within MPMX20_01274 at 1338.814 kb on - strand, within MPMX20_01274 at 1338.819 kb on - strand, within MPMX20_01274 at 1338.865 kb on + strand, within MPMX20_01274 at 1338.874 kb on - strand, within MPMX20_01274 at 1338.874 kb on - strand, within MPMX20_01274 at 1338.915 kb on - strand, within MPMX20_01274 at 1338.932 kb on + strand, within MPMX20_01274 at 1338.935 kb on - strand, within MPMX20_01274 at 1338.940 kb on - strand, within MPMX20_01274 at 1338.940 kb on - strand, within MPMX20_01274 at 1338.942 kb on + strand, within MPMX20_01274 at 1338.950 kb on - strand, within MPMX20_01274 at 1338.984 kb on - strand, within MPMX20_01274 at 1338.989 kb on - strand, within MPMX20_01274 at 1339.062 kb on - strand, within MPMX20_01274 at 1339.117 kb on + strand, within MPMX20_01274 at 1339.125 kb on - strand, within MPMX20_01274 at 1339.125 kb on - strand, within MPMX20_01274 at 1339.167 kb on + strand, within MPMX20_01274 at 1339.193 kb on + strand, within MPMX20_01274 at 1339.246 kb on - strand, within MPMX20_01274 at 1339.248 kb on + strand, within MPMX20_01274 at 1339.256 kb on - strand, within MPMX20_01274
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Bacillus_pumilus_TBS_103 remove 1,336,878 - MPMX20_01272 0.40 -2.0 1,336,941 - MPMX20_01272 0.44 -1.1 1,336,994 + MPMX20_01272 0.48 -2.0 1,337,002 - MPMX20_01272 0.48 +2.2 1,337,028 - MPMX20_01272 0.50 -0.7 1,337,032 + MPMX20_01272 0.50 +1.1 1,337,061 + MPMX20_01272 0.52 +0.3 1,337,151 + MPMX20_01272 0.58 -0.2 1,337,151 + MPMX20_01272 0.58 +2.6 1,337,159 - MPMX20_01272 0.58 +0.6 1,337,199 + MPMX20_01272 0.61 -1.5 1,337,271 - MPMX20_01272 0.65 -0.9 1,337,271 - MPMX20_01272 0.65 -0.2 1,337,305 + MPMX20_01272 0.67 -3.9 1,337,313 - MPMX20_01272 0.68 -0.2 1,337,313 - MPMX20_01272 0.68 -0.2 1,337,313 - MPMX20_01272 0.68 -0.8 1,337,402 - MPMX20_01272 0.74 -1.3 1,337,434 - MPMX20_01272 0.76 +0.7 1,337,497 + MPMX20_01272 0.80 -0.4 1,337,526 + MPMX20_01272 0.81 -2.7 1,337,526 + MPMX20_01272 0.81 -2.4 1,337,526 + MPMX20_01272 0.81 -1.0 1,337,534 - MPMX20_01272 0.82 -2.6 1,337,621 - MPMX20_01272 0.88 +0.8 1,337,659 - +1.6 1,337,698 + -2.1 1,337,705 + -0.2 1,337,708 + -0.1 1,337,718 + -1.9 1,337,723 + +0.5 1,337,761 - -1.4 1,337,771 + +1.3 1,337,851 - -1.4 1,337,853 + +0.4 1,337,862 - +0.8 1,337,925 + MPMX20_01273 0.12 +0.6 1,338,004 - MPMX20_01273 0.30 -1.0 1,338,056 + MPMX20_01273 0.42 -1.6 1,338,057 + MPMX20_01273 0.42 +0.6 1,338,206 + MPMX20_01273 0.77 -0.7 1,338,246 - MPMX20_01273 0.86 -2.0 1,338,258 + MPMX20_01273 0.89 -2.0 1,338,432 + +0.1 1,338,432 + +1.5 1,338,441 + -0.4 1,338,448 + +0.1 1,338,458 - -1.3 1,338,460 + -0.8 1,338,460 + +0.1 1,338,460 + -2.0 1,338,468 - -0.8 1,338,553 - -1.8 1,338,563 + -0.9 1,338,576 + -1.9 1,338,576 + +0.1 1,338,613 - MPMX20_01274 0.10 -1.4 1,338,645 - MPMX20_01274 0.13 +0.0 1,338,688 - MPMX20_01274 0.16 +0.2 1,338,736 - MPMX20_01274 0.20 +0.3 1,338,806 + MPMX20_01274 0.26 -0.6 1,338,806 + MPMX20_01274 0.26 +0.5 1,338,809 - MPMX20_01274 0.26 -0.3 1,338,814 - MPMX20_01274 0.27 +1.2 1,338,819 - MPMX20_01274 0.27 +0.4 1,338,865 + MPMX20_01274 0.31 -0.9 1,338,874 - MPMX20_01274 0.31 +1.8 1,338,874 - MPMX20_01274 0.31 -0.6 1,338,915 - MPMX20_01274 0.35 +0.2 1,338,932 + MPMX20_01274 0.36 +0.6 1,338,935 - MPMX20_01274 0.36 -2.0 1,338,940 - MPMX20_01274 0.37 -1.0 1,338,940 - MPMX20_01274 0.37 -0.7 1,338,942 + MPMX20_01274 0.37 -0.4 1,338,950 - MPMX20_01274 0.38 +1.1 1,338,984 - MPMX20_01274 0.40 -2.2 1,338,989 - MPMX20_01274 0.41 +0.4 1,339,062 - MPMX20_01274 0.47 +0.5 1,339,117 + MPMX20_01274 0.51 -3.5 1,339,125 - MPMX20_01274 0.52 -0.4 1,339,125 - MPMX20_01274 0.52 +0.9 1,339,167 + MPMX20_01274 0.55 -0.0 1,339,193 + MPMX20_01274 0.57 +0.9 1,339,246 - MPMX20_01274 0.62 -2.5 1,339,248 + MPMX20_01274 0.62 +1.3 1,339,256 - MPMX20_01274 0.62 +2.6
Or see this region's nucleotide sequence