Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01273

Experiment: TSB plate, 1:1 coculture with Bacillus_pumilus_TBS_103

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01272 and MPMX20_01273 are separated by 59 nucleotidesMPMX20_01273 and MPMX20_01274 are separated by 180 nucleotides MPMX20_01272: MPMX20_01272 - Alkyl hydroperoxide reductase subunit F, at 1,336,250 to 1,337,815 _01272 MPMX20_01273: MPMX20_01273 - Universal stress protein UP12, at 1,337,875 to 1,338,303 _01273 MPMX20_01274: MPMX20_01274 - putative zinc-binding alcohol dehydrogenase, at 1,338,484 to 1,339,722 _01274 Position (kb) 1337 1338 1339Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1336.878 kb on - strand, within MPMX20_01272at 1336.941 kb on - strand, within MPMX20_01272at 1336.994 kb on + strand, within MPMX20_01272at 1337.002 kb on - strand, within MPMX20_01272at 1337.028 kb on - strand, within MPMX20_01272at 1337.032 kb on + strand, within MPMX20_01272at 1337.061 kb on + strand, within MPMX20_01272at 1337.151 kb on + strand, within MPMX20_01272at 1337.151 kb on + strand, within MPMX20_01272at 1337.159 kb on - strand, within MPMX20_01272at 1337.199 kb on + strand, within MPMX20_01272at 1337.271 kb on - strand, within MPMX20_01272at 1337.271 kb on - strand, within MPMX20_01272at 1337.305 kb on + strand, within MPMX20_01272at 1337.313 kb on - strand, within MPMX20_01272at 1337.313 kb on - strand, within MPMX20_01272at 1337.313 kb on - strand, within MPMX20_01272at 1337.402 kb on - strand, within MPMX20_01272at 1337.434 kb on - strand, within MPMX20_01272at 1337.497 kb on + strand, within MPMX20_01272at 1337.526 kb on + strand, within MPMX20_01272at 1337.526 kb on + strand, within MPMX20_01272at 1337.526 kb on + strand, within MPMX20_01272at 1337.534 kb on - strand, within MPMX20_01272at 1337.621 kb on - strand, within MPMX20_01272at 1337.659 kb on - strandat 1337.698 kb on + strandat 1337.705 kb on + strandat 1337.708 kb on + strandat 1337.718 kb on + strandat 1337.723 kb on + strandat 1337.761 kb on - strandat 1337.771 kb on + strandat 1337.851 kb on - strandat 1337.853 kb on + strandat 1337.862 kb on - strandat 1337.925 kb on + strand, within MPMX20_01273at 1338.004 kb on - strand, within MPMX20_01273at 1338.056 kb on + strand, within MPMX20_01273at 1338.057 kb on + strand, within MPMX20_01273at 1338.206 kb on + strand, within MPMX20_01273at 1338.246 kb on - strand, within MPMX20_01273at 1338.258 kb on + strand, within MPMX20_01273at 1338.432 kb on + strandat 1338.432 kb on + strandat 1338.441 kb on + strandat 1338.448 kb on + strandat 1338.458 kb on - strandat 1338.460 kb on + strandat 1338.460 kb on + strandat 1338.460 kb on + strandat 1338.468 kb on - strandat 1338.553 kb on - strandat 1338.563 kb on + strandat 1338.576 kb on + strandat 1338.576 kb on + strandat 1338.613 kb on - strand, within MPMX20_01274at 1338.645 kb on - strand, within MPMX20_01274at 1338.688 kb on - strand, within MPMX20_01274at 1338.736 kb on - strand, within MPMX20_01274at 1338.806 kb on + strand, within MPMX20_01274at 1338.806 kb on + strand, within MPMX20_01274at 1338.809 kb on - strand, within MPMX20_01274at 1338.814 kb on - strand, within MPMX20_01274at 1338.819 kb on - strand, within MPMX20_01274at 1338.865 kb on + strand, within MPMX20_01274at 1338.874 kb on - strand, within MPMX20_01274at 1338.874 kb on - strand, within MPMX20_01274at 1338.915 kb on - strand, within MPMX20_01274at 1338.932 kb on + strand, within MPMX20_01274at 1338.935 kb on - strand, within MPMX20_01274at 1338.940 kb on - strand, within MPMX20_01274at 1338.940 kb on - strand, within MPMX20_01274at 1338.942 kb on + strand, within MPMX20_01274at 1338.950 kb on - strand, within MPMX20_01274at 1338.984 kb on - strand, within MPMX20_01274at 1338.989 kb on - strand, within MPMX20_01274at 1339.062 kb on - strand, within MPMX20_01274at 1339.117 kb on + strand, within MPMX20_01274at 1339.125 kb on - strand, within MPMX20_01274at 1339.125 kb on - strand, within MPMX20_01274at 1339.167 kb on + strand, within MPMX20_01274at 1339.193 kb on + strand, within MPMX20_01274at 1339.246 kb on - strand, within MPMX20_01274at 1339.248 kb on + strand, within MPMX20_01274at 1339.256 kb on - strand, within MPMX20_01274

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Bacillus_pumilus_TBS_103
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1,336,878 - MPMX20_01272 0.40 -2.0
1,336,941 - MPMX20_01272 0.44 -1.1
1,336,994 + MPMX20_01272 0.48 -2.0
1,337,002 - MPMX20_01272 0.48 +2.2
1,337,028 - MPMX20_01272 0.50 -0.7
1,337,032 + MPMX20_01272 0.50 +1.1
1,337,061 + MPMX20_01272 0.52 +0.3
1,337,151 + MPMX20_01272 0.58 -0.2
1,337,151 + MPMX20_01272 0.58 +2.6
1,337,159 - MPMX20_01272 0.58 +0.6
1,337,199 + MPMX20_01272 0.61 -1.5
1,337,271 - MPMX20_01272 0.65 -0.9
1,337,271 - MPMX20_01272 0.65 -0.2
1,337,305 + MPMX20_01272 0.67 -3.9
1,337,313 - MPMX20_01272 0.68 -0.2
1,337,313 - MPMX20_01272 0.68 -0.2
1,337,313 - MPMX20_01272 0.68 -0.8
1,337,402 - MPMX20_01272 0.74 -1.3
1,337,434 - MPMX20_01272 0.76 +0.7
1,337,497 + MPMX20_01272 0.80 -0.4
1,337,526 + MPMX20_01272 0.81 -2.7
1,337,526 + MPMX20_01272 0.81 -2.4
1,337,526 + MPMX20_01272 0.81 -1.0
1,337,534 - MPMX20_01272 0.82 -2.6
1,337,621 - MPMX20_01272 0.88 +0.8
1,337,659 - +1.6
1,337,698 + -2.1
1,337,705 + -0.2
1,337,708 + -0.1
1,337,718 + -1.9
1,337,723 + +0.5
1,337,761 - -1.4
1,337,771 + +1.3
1,337,851 - -1.4
1,337,853 + +0.4
1,337,862 - +0.8
1,337,925 + MPMX20_01273 0.12 +0.6
1,338,004 - MPMX20_01273 0.30 -1.0
1,338,056 + MPMX20_01273 0.42 -1.6
1,338,057 + MPMX20_01273 0.42 +0.6
1,338,206 + MPMX20_01273 0.77 -0.7
1,338,246 - MPMX20_01273 0.86 -2.0
1,338,258 + MPMX20_01273 0.89 -2.0
1,338,432 + +0.1
1,338,432 + +1.5
1,338,441 + -0.4
1,338,448 + +0.1
1,338,458 - -1.3
1,338,460 + -0.8
1,338,460 + +0.1
1,338,460 + -2.0
1,338,468 - -0.8
1,338,553 - -1.8
1,338,563 + -0.9
1,338,576 + -1.9
1,338,576 + +0.1
1,338,613 - MPMX20_01274 0.10 -1.4
1,338,645 - MPMX20_01274 0.13 +0.0
1,338,688 - MPMX20_01274 0.16 +0.2
1,338,736 - MPMX20_01274 0.20 +0.3
1,338,806 + MPMX20_01274 0.26 -0.6
1,338,806 + MPMX20_01274 0.26 +0.5
1,338,809 - MPMX20_01274 0.26 -0.3
1,338,814 - MPMX20_01274 0.27 +1.2
1,338,819 - MPMX20_01274 0.27 +0.4
1,338,865 + MPMX20_01274 0.31 -0.9
1,338,874 - MPMX20_01274 0.31 +1.8
1,338,874 - MPMX20_01274 0.31 -0.6
1,338,915 - MPMX20_01274 0.35 +0.2
1,338,932 + MPMX20_01274 0.36 +0.6
1,338,935 - MPMX20_01274 0.36 -2.0
1,338,940 - MPMX20_01274 0.37 -1.0
1,338,940 - MPMX20_01274 0.37 -0.7
1,338,942 + MPMX20_01274 0.37 -0.4
1,338,950 - MPMX20_01274 0.38 +1.1
1,338,984 - MPMX20_01274 0.40 -2.2
1,338,989 - MPMX20_01274 0.41 +0.4
1,339,062 - MPMX20_01274 0.47 +0.5
1,339,117 + MPMX20_01274 0.51 -3.5
1,339,125 - MPMX20_01274 0.52 -0.4
1,339,125 - MPMX20_01274 0.52 +0.9
1,339,167 + MPMX20_01274 0.55 -0.0
1,339,193 + MPMX20_01274 0.57 +0.9
1,339,246 - MPMX20_01274 0.62 -2.5
1,339,248 + MPMX20_01274 0.62 +1.3
1,339,256 - MPMX20_01274 0.62 +2.6

Or see this region's nucleotide sequence