Experiment: RCH2_defined_glucose plate, 1:1 coculture with Enterobacter_ludwigii_PH2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04298 and MPMX20_04299 are separated by 111 nucleotides MPMX20_04299 and MPMX20_04300 are separated by 36 nucleotides MPMX20_04300 and MPMX20_04301 are separated by 61 nucleotides MPMX20_04301 and MPMX20_04302 are separated by 307 nucleotides
MPMX20_04298: MPMX20_04298 - hypothetical protein, at 4,484,094 to 4,484,363
_04298
MPMX20_04299: MPMX20_04299 - Pimeloyl-[acyl-carrier protein] methyl ester esterase, at 4,484,475 to 4,485,248
_04299
MPMX20_04300: MPMX20_04300 - Putative ribose-phosphate pyrophosphokinase, at 4,485,285 to 4,485,968
_04300
MPMX20_04301: MPMX20_04301 - Fe/S biogenesis protein NfuA, at 4,486,030 to 4,486,605
_04301
MPMX20_04302: MPMX20_04302 - High-affinity gluconate transporter, at 4,486,913 to 4,488,229
_04302
Position (kb) 4485
4486 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 4484.299 kb on - strand, within MPMX20_04298 at 4484.373 kb on - strand at 4484.383 kb on - strand at 4484.430 kb on - strand at 4484.517 kb on - strand at 4484.930 kb on + strand, within MPMX20_04299 at 4484.935 kb on + strand, within MPMX20_04299 at 4484.943 kb on - strand, within MPMX20_04299 at 4484.943 kb on - strand, within MPMX20_04299 at 4484.943 kb on - strand, within MPMX20_04299 at 4484.953 kb on - strand, within MPMX20_04299 at 4484.962 kb on + strand, within MPMX20_04299 at 4484.967 kb on + strand, within MPMX20_04299 at 4484.975 kb on - strand, within MPMX20_04299 at 4485.039 kb on + strand, within MPMX20_04299 at 4485.047 kb on - strand, within MPMX20_04299 at 4485.179 kb on + strand at 4485.218 kb on + strand at 4485.218 kb on + strand at 4485.251 kb on - strand at 4485.284 kb on + strand at 4485.286 kb on + strand at 4485.294 kb on - strand at 4485.294 kb on - strand at 4485.324 kb on + strand at 4485.365 kb on - strand, within MPMX20_04300 at 4485.519 kb on - strand, within MPMX20_04300 at 4485.548 kb on + strand, within MPMX20_04300 at 4485.554 kb on - strand, within MPMX20_04300 at 4485.650 kb on - strand, within MPMX20_04300 at 4485.736 kb on - strand, within MPMX20_04300 at 4485.877 kb on + strand, within MPMX20_04300 at 4485.885 kb on - strand, within MPMX20_04300 at 4485.948 kb on + strand at 4485.961 kb on - strand at 4486.209 kb on + strand, within MPMX20_04301 at 4486.209 kb on + strand, within MPMX20_04301 at 4486.209 kb on + strand, within MPMX20_04301 at 4486.209 kb on + strand, within MPMX20_04301 at 4486.217 kb on - strand, within MPMX20_04301 at 4486.217 kb on - strand, within MPMX20_04301 at 4486.230 kb on + strand, within MPMX20_04301 at 4486.266 kb on - strand, within MPMX20_04301 at 4486.548 kb on + strand at 4486.556 kb on - strand at 4486.556 kb on - strand at 4486.556 kb on - strand at 4486.638 kb on - strand at 4486.674 kb on + strand at 4486.687 kb on - strand at 4486.762 kb on + strand at 4486.772 kb on + strand at 4486.938 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose plate, 1:1 coculture with Enterobacter_ludwigii_PH2 remove 4,484,299 - MPMX20_04298 0.76 +0.2 4,484,373 - +1.1 4,484,383 - +1.3 4,484,430 - -2.1 4,484,517 - +0.2 4,484,930 + MPMX20_04299 0.59 +1.4 4,484,935 + MPMX20_04299 0.59 -1.8 4,484,943 - MPMX20_04299 0.60 +0.8 4,484,943 - MPMX20_04299 0.60 -2.9 4,484,943 - MPMX20_04299 0.60 -3.2 4,484,953 - MPMX20_04299 0.62 +0.9 4,484,962 + MPMX20_04299 0.63 +1.0 4,484,967 + MPMX20_04299 0.64 +1.4 4,484,975 - MPMX20_04299 0.65 +5.4 4,485,039 + MPMX20_04299 0.73 -1.1 4,485,047 - MPMX20_04299 0.74 -0.4 4,485,179 + -1.9 4,485,218 + -0.1 4,485,218 + -0.2 4,485,251 - -0.7 4,485,284 + +2.1 4,485,286 + -0.7 4,485,294 - -0.2 4,485,294 - +0.8 4,485,324 + -0.5 4,485,365 - MPMX20_04300 0.12 -0.4 4,485,519 - MPMX20_04300 0.34 +0.1 4,485,548 + MPMX20_04300 0.38 +0.9 4,485,554 - MPMX20_04300 0.39 -2.1 4,485,650 - MPMX20_04300 0.53 -0.4 4,485,736 - MPMX20_04300 0.66 +0.6 4,485,877 + MPMX20_04300 0.87 -1.0 4,485,885 - MPMX20_04300 0.88 +0.6 4,485,948 + -0.1 4,485,961 - +0.4 4,486,209 + MPMX20_04301 0.31 -1.9 4,486,209 + MPMX20_04301 0.31 +0.4 4,486,209 + MPMX20_04301 0.31 +0.8 4,486,209 + MPMX20_04301 0.31 -0.7 4,486,217 - MPMX20_04301 0.32 -2.0 4,486,217 - MPMX20_04301 0.32 -1.4 4,486,230 + MPMX20_04301 0.35 -0.8 4,486,266 - MPMX20_04301 0.41 +2.3 4,486,548 + -1.3 4,486,556 - -1.2 4,486,556 - -1.7 4,486,556 - -3.4 4,486,638 - -2.6 4,486,674 + +1.2 4,486,687 - +1.2 4,486,762 + +0.8 4,486,772 + -0.8 4,486,938 + +0.6
Or see this region's nucleotide sequence