Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00715

Experiment: RCH2_defined_glucose plate, 1:1 coculture with Enterobacter_ludwigii_PH2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00713 and MPMX20_00714 are separated by 34 nucleotidesMPMX20_00714 and MPMX20_00715 are separated by 66 nucleotidesMPMX20_00715 and MPMX20_00716 are separated by 262 nucleotides MPMX20_00713: MPMX20_00713 - hypothetical protein, at 736,035 to 736,334 _00713 MPMX20_00714: MPMX20_00714 - Peroxide stress resistance protein YaaA, at 736,369 to 737,139 _00714 MPMX20_00715: MPMX20_00715 - Amino-acid carrier protein AlsT, at 737,206 to 738,636 _00715 MPMX20_00716: MPMX20_00716 - Transaldolase B, at 738,899 to 739,852 _00716 Position (kb) 737 738 739Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 736.220 kb on - strand, within MPMX20_00713at 736.272 kb on - strand, within MPMX20_00713at 736.381 kb on + strandat 736.444 kb on - strandat 736.446 kb on - strand, within MPMX20_00714at 736.474 kb on + strand, within MPMX20_00714at 736.474 kb on + strand, within MPMX20_00714at 736.482 kb on - strand, within MPMX20_00714at 736.532 kb on + strand, within MPMX20_00714at 736.532 kb on + strand, within MPMX20_00714at 736.532 kb on + strand, within MPMX20_00714at 736.532 kb on + strand, within MPMX20_00714at 736.540 kb on - strand, within MPMX20_00714at 736.540 kb on - strand, within MPMX20_00714at 736.540 kb on - strand, within MPMX20_00714at 736.641 kb on + strand, within MPMX20_00714at 736.644 kb on + strand, within MPMX20_00714at 736.716 kb on - strand, within MPMX20_00714at 736.730 kb on - strand, within MPMX20_00714at 736.773 kb on + strand, within MPMX20_00714at 736.791 kb on + strand, within MPMX20_00714at 736.800 kb on + strand, within MPMX20_00714at 736.832 kb on - strand, within MPMX20_00714at 736.834 kb on + strand, within MPMX20_00714at 736.884 kb on - strand, within MPMX20_00714at 736.967 kb on - strand, within MPMX20_00714at 737.043 kb on + strand, within MPMX20_00714at 737.061 kb on - strand, within MPMX20_00714at 737.069 kb on - strandat 737.078 kb on - strandat 737.140 kb on + strandat 737.147 kb on - strandat 737.148 kb on - strandat 737.148 kb on - strandat 737.213 kb on + strandat 737.307 kb on + strandat 737.307 kb on + strandat 737.307 kb on + strandat 737.307 kb on + strandat 737.307 kb on + strandat 737.307 kb on + strandat 737.307 kb on + strandat 737.307 kb on + strandat 737.307 kb on + strandat 737.315 kb on - strandat 737.315 kb on - strandat 737.315 kb on - strandat 737.331 kb on + strandat 737.342 kb on + strandat 737.350 kb on - strand, within MPMX20_00715at 737.350 kb on - strand, within MPMX20_00715at 737.350 kb on - strand, within MPMX20_00715at 737.350 kb on - strand, within MPMX20_00715at 737.367 kb on + strand, within MPMX20_00715at 737.367 kb on + strand, within MPMX20_00715at 737.416 kb on - strand, within MPMX20_00715at 737.416 kb on - strand, within MPMX20_00715at 737.431 kb on - strand, within MPMX20_00715at 737.454 kb on + strand, within MPMX20_00715at 737.462 kb on - strand, within MPMX20_00715at 737.462 kb on - strand, within MPMX20_00715at 737.468 kb on - strand, within MPMX20_00715at 737.480 kb on - strand, within MPMX20_00715at 737.533 kb on - strand, within MPMX20_00715at 737.558 kb on - strand, within MPMX20_00715at 737.579 kb on - strand, within MPMX20_00715at 737.634 kb on + strand, within MPMX20_00715at 737.779 kb on - strand, within MPMX20_00715at 737.866 kb on + strand, within MPMX20_00715at 737.873 kb on + strand, within MPMX20_00715at 737.873 kb on + strand, within MPMX20_00715at 737.878 kb on + strand, within MPMX20_00715at 737.881 kb on - strand, within MPMX20_00715at 737.881 kb on - strand, within MPMX20_00715at 737.881 kb on - strand, within MPMX20_00715at 737.881 kb on - strand, within MPMX20_00715at 737.881 kb on - strand, within MPMX20_00715at 737.881 kb on - strand, within MPMX20_00715at 737.987 kb on - strand, within MPMX20_00715at 737.987 kb on - strand, within MPMX20_00715at 737.990 kb on + strand, within MPMX20_00715at 737.990 kb on + strand, within MPMX20_00715at 737.990 kb on + strand, within MPMX20_00715at 737.995 kb on + strand, within MPMX20_00715at 737.998 kb on - strand, within MPMX20_00715at 737.998 kb on - strand, within MPMX20_00715at 737.998 kb on - strand, within MPMX20_00715at 738.042 kb on + strand, within MPMX20_00715at 738.049 kb on - strand, within MPMX20_00715at 738.066 kb on + strand, within MPMX20_00715at 738.079 kb on + strand, within MPMX20_00715at 738.120 kb on - strand, within MPMX20_00715at 738.120 kb on - strand, within MPMX20_00715at 738.129 kb on + strand, within MPMX20_00715at 738.132 kb on - strand, within MPMX20_00715at 738.176 kb on + strand, within MPMX20_00715at 738.181 kb on - strand, within MPMX20_00715at 738.222 kb on + strand, within MPMX20_00715at 738.222 kb on + strand, within MPMX20_00715at 738.222 kb on + strand, within MPMX20_00715at 738.230 kb on - strand, within MPMX20_00715at 738.241 kb on + strand, within MPMX20_00715at 738.249 kb on - strand, within MPMX20_00715at 738.249 kb on - strand, within MPMX20_00715at 738.300 kb on - strand, within MPMX20_00715at 738.307 kb on + strand, within MPMX20_00715at 738.320 kb on - strand, within MPMX20_00715at 738.334 kb on + strand, within MPMX20_00715at 738.391 kb on - strand, within MPMX20_00715at 738.393 kb on + strand, within MPMX20_00715at 738.413 kb on - strand, within MPMX20_00715at 738.418 kb on + strand, within MPMX20_00715at 738.424 kb on - strand, within MPMX20_00715at 738.429 kb on + strand, within MPMX20_00715at 738.461 kb on - strand, within MPMX20_00715at 738.474 kb on + strand, within MPMX20_00715at 738.480 kb on + strand, within MPMX20_00715at 738.482 kb on - strand, within MPMX20_00715at 738.531 kb on + strandat 738.531 kb on + strandat 738.552 kb on - strandat 738.552 kb on - strandat 738.579 kb on + strandat 738.579 kb on + strandat 738.585 kb on + strandat 738.596 kb on + strandat 738.596 kb on + strandat 738.611 kb on - strandat 738.650 kb on - strandat 738.740 kb on + strandat 738.755 kb on - strandat 738.763 kb on + strandat 738.786 kb on + strandat 738.786 kb on + strandat 738.786 kb on + strandat 738.786 kb on + strandat 738.789 kb on - strandat 738.863 kb on + strandat 738.926 kb on - strandat 738.926 kb on - strandat 738.928 kb on + strandat 738.936 kb on - strandat 738.946 kb on - strandat 738.984 kb on - strandat 738.997 kb on + strand, within MPMX20_00716at 738.997 kb on + strand, within MPMX20_00716at 739.005 kb on - strand, within MPMX20_00716at 739.015 kb on + strand, within MPMX20_00716at 739.079 kb on + strand, within MPMX20_00716at 739.220 kb on - strand, within MPMX20_00716at 739.228 kb on - strand, within MPMX20_00716at 739.353 kb on + strand, within MPMX20_00716at 739.361 kb on - strand, within MPMX20_00716at 739.387 kb on + strand, within MPMX20_00716at 739.442 kb on + strand, within MPMX20_00716at 739.452 kb on + strand, within MPMX20_00716at 739.562 kb on - strand, within MPMX20_00716at 739.576 kb on - strand, within MPMX20_00716

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose plate, 1:1 coculture with Enterobacter_ludwigii_PH2
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736,220 - MPMX20_00713 0.62 -0.2
736,272 - MPMX20_00713 0.79 +2.0
736,381 + -0.3
736,444 - +0.5
736,446 - MPMX20_00714 0.10 +1.3
736,474 + MPMX20_00714 0.14 -0.5
736,474 + MPMX20_00714 0.14 -0.5
736,482 - MPMX20_00714 0.15 -0.9
736,532 + MPMX20_00714 0.21 -1.3
736,532 + MPMX20_00714 0.21 +1.0
736,532 + MPMX20_00714 0.21 +0.2
736,532 + MPMX20_00714 0.21 +0.8
736,540 - MPMX20_00714 0.22 +0.0
736,540 - MPMX20_00714 0.22 +0.7
736,540 - MPMX20_00714 0.22 -0.5
736,641 + MPMX20_00714 0.35 -1.8
736,644 + MPMX20_00714 0.36 +1.2
736,716 - MPMX20_00714 0.45 -0.8
736,730 - MPMX20_00714 0.47 +0.4
736,773 + MPMX20_00714 0.52 +0.8
736,791 + MPMX20_00714 0.55 -0.0
736,800 + MPMX20_00714 0.56 +0.5
736,832 - MPMX20_00714 0.60 +0.2
736,834 + MPMX20_00714 0.60 -1.6
736,884 - MPMX20_00714 0.67 +3.6
736,967 - MPMX20_00714 0.78 -0.1
737,043 + MPMX20_00714 0.87 -1.9
737,061 - MPMX20_00714 0.90 -0.4
737,069 - -1.1
737,078 - -3.2
737,140 + +0.2
737,147 - +0.2
737,148 - +2.1
737,148 - -1.0
737,213 + -0.8
737,307 + -2.3
737,307 + -0.5
737,307 + -0.3
737,307 + -1.6
737,307 + +1.6
737,307 + -1.5
737,307 + +2.6
737,307 + -1.1
737,307 + -1.1
737,315 - -1.6
737,315 - +2.3
737,315 - -2.6
737,331 + +1.2
737,342 + -0.3
737,350 - MPMX20_00715 0.10 -1.3
737,350 - MPMX20_00715 0.10 -1.3
737,350 - MPMX20_00715 0.10 -1.9
737,350 - MPMX20_00715 0.10 -0.2
737,367 + MPMX20_00715 0.11 -1.4
737,367 + MPMX20_00715 0.11 -1.4
737,416 - MPMX20_00715 0.15 -2.3
737,416 - MPMX20_00715 0.15 -0.1
737,431 - MPMX20_00715 0.16 -1.5
737,454 + MPMX20_00715 0.17 -0.7
737,462 - MPMX20_00715 0.18 -0.2
737,462 - MPMX20_00715 0.18 -2.4
737,468 - MPMX20_00715 0.18 -1.9
737,480 - MPMX20_00715 0.19 +2.8
737,533 - MPMX20_00715 0.23 -1.3
737,558 - MPMX20_00715 0.25 +0.5
737,579 - MPMX20_00715 0.26 +1.8
737,634 + MPMX20_00715 0.30 -1.1
737,779 - MPMX20_00715 0.40 +0.1
737,866 + MPMX20_00715 0.46 -0.5
737,873 + MPMX20_00715 0.47 -2.5
737,873 + MPMX20_00715 0.47 -0.7
737,878 + MPMX20_00715 0.47 -3.2
737,881 - MPMX20_00715 0.47 -1.7
737,881 - MPMX20_00715 0.47 +0.1
737,881 - MPMX20_00715 0.47 +0.8
737,881 - MPMX20_00715 0.47 -0.9
737,881 - MPMX20_00715 0.47 +0.8
737,881 - MPMX20_00715 0.47 -0.7
737,987 - MPMX20_00715 0.55 -0.5
737,987 - MPMX20_00715 0.55 -2.5
737,990 + MPMX20_00715 0.55 -1.7
737,990 + MPMX20_00715 0.55 -1.6
737,990 + MPMX20_00715 0.55 -0.2
737,995 + MPMX20_00715 0.55 +1.5
737,998 - MPMX20_00715 0.55 -3.3
737,998 - MPMX20_00715 0.55 -0.5
737,998 - MPMX20_00715 0.55 -2.7
738,042 + MPMX20_00715 0.58 -2.0
738,049 - MPMX20_00715 0.59 -0.4
738,066 + MPMX20_00715 0.60 -0.9
738,079 + MPMX20_00715 0.61 +0.5
738,120 - MPMX20_00715 0.64 -0.8
738,120 - MPMX20_00715 0.64 -2.3
738,129 + MPMX20_00715 0.65 -1.5
738,132 - MPMX20_00715 0.65 -2.0
738,176 + MPMX20_00715 0.68 +1.6
738,181 - MPMX20_00715 0.68 -2.0
738,222 + MPMX20_00715 0.71 -0.0
738,222 + MPMX20_00715 0.71 -1.9
738,222 + MPMX20_00715 0.71 -2.5
738,230 - MPMX20_00715 0.72 -1.2
738,241 + MPMX20_00715 0.72 -2.3
738,249 - MPMX20_00715 0.73 -1.3
738,249 - MPMX20_00715 0.73 -1.1
738,300 - MPMX20_00715 0.76 -1.7
738,307 + MPMX20_00715 0.77 -2.0
738,320 - MPMX20_00715 0.78 -3.8
738,334 + MPMX20_00715 0.79 -1.8
738,391 - MPMX20_00715 0.83 -1.5
738,393 + MPMX20_00715 0.83 +0.5
738,413 - MPMX20_00715 0.84 +0.2
738,418 + MPMX20_00715 0.85 -0.0
738,424 - MPMX20_00715 0.85 -0.1
738,429 + MPMX20_00715 0.85 -2.3
738,461 - MPMX20_00715 0.88 +0.2
738,474 + MPMX20_00715 0.89 -1.9
738,480 + MPMX20_00715 0.89 +2.8
738,482 - MPMX20_00715 0.89 +0.3
738,531 + +0.8
738,531 + -0.9
738,552 - -1.6
738,552 - -0.3
738,579 + -0.6
738,579 + +0.5
738,585 + -0.9
738,596 + -2.8
738,596 + -1.1
738,611 - +0.7
738,650 - +0.8
738,740 + -0.1
738,755 - +0.3
738,763 + -0.7
738,786 + -1.1
738,786 + -2.9
738,786 + -2.7
738,786 + -1.2
738,789 - +0.6
738,863 + -1.9
738,926 - -2.8
738,926 - +1.9
738,928 + -3.0
738,936 - -0.9
738,946 - -0.0
738,984 - -1.0
738,997 + MPMX20_00716 0.10 -1.5
738,997 + MPMX20_00716 0.10 +0.3
739,005 - MPMX20_00716 0.11 -2.0
739,015 + MPMX20_00716 0.12 -1.6
739,079 + MPMX20_00716 0.19 +1.2
739,220 - MPMX20_00716 0.34 +1.2
739,228 - MPMX20_00716 0.34 -0.4
739,353 + MPMX20_00716 0.48 -1.5
739,361 - MPMX20_00716 0.48 -1.2
739,387 + MPMX20_00716 0.51 +0.2
739,442 + MPMX20_00716 0.57 -0.4
739,452 + MPMX20_00716 0.58 +0.4
739,562 - MPMX20_00716 0.69 -0.7
739,576 - MPMX20_00716 0.71 +0.8

Or see this region's nucleotide sequence