Experiment: RCH2_defined_glucose plate, 1:1 coculture with Enterobacter_ludwigii_PH2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00539 and MPMX20_00540 are separated by 392 nucleotides MPMX20_00540 and MPMX20_00541 are separated by 150 nucleotides
MPMX20_00539: MPMX20_00539 - HTH-type transcriptional regulator TreR, at 559,101 to 560,048
_00539
MPMX20_00540: MPMX20_00540 - Magnesium-transporting ATPase, P-type 1, at 560,441 to 563,149
_00540
MPMX20_00541: MPMX20_00541 - hypothetical protein, at 563,300 to 565,684
_00541
Position (kb) 560
561
562
563
564 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 559.449 kb on + strand, within MPMX20_00539 at 559.462 kb on - strand, within MPMX20_00539 at 559.521 kb on + strand, within MPMX20_00539 at 559.553 kb on + strand, within MPMX20_00539 at 559.555 kb on + strand, within MPMX20_00539 at 559.568 kb on + strand, within MPMX20_00539 at 559.604 kb on - strand, within MPMX20_00539 at 559.606 kb on + strand, within MPMX20_00539 at 559.641 kb on - strand, within MPMX20_00539 at 559.657 kb on - strand, within MPMX20_00539 at 559.679 kb on + strand, within MPMX20_00539 at 559.679 kb on + strand, within MPMX20_00539 at 559.679 kb on + strand, within MPMX20_00539 at 559.708 kb on + strand, within MPMX20_00539 at 559.738 kb on + strand, within MPMX20_00539 at 559.767 kb on + strand, within MPMX20_00539 at 559.775 kb on - strand, within MPMX20_00539 at 559.781 kb on + strand, within MPMX20_00539 at 559.800 kb on + strand, within MPMX20_00539 at 559.808 kb on - strand, within MPMX20_00539 at 559.808 kb on - strand, within MPMX20_00539 at 559.808 kb on - strand, within MPMX20_00539 at 559.909 kb on - strand, within MPMX20_00539 at 560.013 kb on - strand at 560.057 kb on - strand at 560.075 kb on - strand at 560.077 kb on + strand at 560.077 kb on + strand at 560.087 kb on + strand at 560.087 kb on + strand at 560.087 kb on + strand at 560.095 kb on - strand at 560.095 kb on - strand at 560.102 kb on - strand at 560.116 kb on + strand at 560.152 kb on + strand at 560.154 kb on + strand at 560.154 kb on + strand at 560.154 kb on + strand at 560.154 kb on + strand at 560.154 kb on + strand at 560.154 kb on + strand at 560.154 kb on + strand at 560.154 kb on + strand at 560.162 kb on - strand at 560.162 kb on - strand at 560.162 kb on - strand at 560.162 kb on - strand at 560.162 kb on - strand at 560.162 kb on - strand at 560.162 kb on - strand at 560.162 kb on - strand at 560.162 kb on - strand at 560.162 kb on - strand at 560.162 kb on - strand at 560.162 kb on - strand at 560.162 kb on - strand at 560.162 kb on - strand at 560.188 kb on + strand at 560.188 kb on + strand at 560.194 kb on + strand at 560.194 kb on + strand at 560.194 kb on + strand at 560.195 kb on - strand at 560.202 kb on - strand at 560.202 kb on - strand at 560.202 kb on - strand at 560.202 kb on - strand at 560.202 kb on - strand at 560.242 kb on + strand at 560.310 kb on - strand at 560.371 kb on - strand at 560.489 kb on - strand at 560.499 kb on + strand at 560.499 kb on + strand at 560.507 kb on - strand at 560.542 kb on - strand at 560.566 kb on + strand at 560.566 kb on + strand at 560.619 kb on + strand at 560.683 kb on - strand at 560.711 kb on + strand at 560.726 kb on + strand, within MPMX20_00540 at 560.734 kb on - strand, within MPMX20_00540 at 560.742 kb on + strand, within MPMX20_00540 at 560.750 kb on - strand, within MPMX20_00540 at 560.761 kb on + strand, within MPMX20_00540 at 560.769 kb on - strand, within MPMX20_00540 at 560.819 kb on + strand, within MPMX20_00540 at 560.842 kb on + strand, within MPMX20_00540 at 560.851 kb on + strand, within MPMX20_00540 at 560.859 kb on - strand, within MPMX20_00540 at 560.877 kb on - strand, within MPMX20_00540 at 560.881 kb on - strand, within MPMX20_00540 at 560.895 kb on + strand, within MPMX20_00540 at 560.959 kb on + strand, within MPMX20_00540 at 560.959 kb on + strand, within MPMX20_00540 at 560.964 kb on + strand, within MPMX20_00540 at 560.964 kb on + strand, within MPMX20_00540 at 560.967 kb on - strand, within MPMX20_00540 at 560.972 kb on - strand, within MPMX20_00540 at 560.972 kb on - strand, within MPMX20_00540 at 561.033 kb on - strand, within MPMX20_00540 at 561.038 kb on + strand, within MPMX20_00540 at 561.065 kb on - strand, within MPMX20_00540 at 561.074 kb on + strand, within MPMX20_00540 at 561.126 kb on + strand, within MPMX20_00540 at 561.134 kb on - strand, within MPMX20_00540 at 561.134 kb on - strand, within MPMX20_00540 at 561.134 kb on - strand, within MPMX20_00540 at 561.179 kb on - strand, within MPMX20_00540 at 561.188 kb on - strand, within MPMX20_00540 at 561.191 kb on - strand, within MPMX20_00540 at 561.235 kb on + strand, within MPMX20_00540 at 561.261 kb on - strand, within MPMX20_00540 at 561.328 kb on + strand, within MPMX20_00540 at 561.374 kb on + strand, within MPMX20_00540 at 561.379 kb on + strand, within MPMX20_00540 at 561.383 kb on - strand, within MPMX20_00540 at 561.425 kb on + strand, within MPMX20_00540 at 561.441 kb on - strand, within MPMX20_00540 at 561.521 kb on + strand, within MPMX20_00540 at 561.523 kb on + strand, within MPMX20_00540 at 561.541 kb on - strand, within MPMX20_00540 at 561.605 kb on - strand, within MPMX20_00540 at 561.647 kb on + strand, within MPMX20_00540 at 561.657 kb on + strand, within MPMX20_00540 at 561.665 kb on - strand, within MPMX20_00540 at 561.672 kb on + strand, within MPMX20_00540 at 561.680 kb on - strand, within MPMX20_00540 at 561.723 kb on - strand, within MPMX20_00540 at 561.723 kb on - strand, within MPMX20_00540 at 561.820 kb on - strand, within MPMX20_00540 at 561.857 kb on + strand, within MPMX20_00540 at 561.889 kb on - strand, within MPMX20_00540 at 561.895 kb on - strand, within MPMX20_00540 at 561.935 kb on - strand, within MPMX20_00540 at 561.972 kb on + strand, within MPMX20_00540 at 561.992 kb on - strand, within MPMX20_00540 at 562.257 kb on - strand, within MPMX20_00540 at 562.264 kb on + strand, within MPMX20_00540 at 562.272 kb on - strand, within MPMX20_00540 at 562.279 kb on + strand, within MPMX20_00540 at 562.315 kb on - strand, within MPMX20_00540 at 562.344 kb on - strand, within MPMX20_00540 at 562.358 kb on - strand, within MPMX20_00540 at 562.389 kb on + strand, within MPMX20_00540 at 562.489 kb on - strand, within MPMX20_00540 at 562.631 kb on + strand, within MPMX20_00540 at 562.640 kb on - strand, within MPMX20_00540 at 562.728 kb on + strand, within MPMX20_00540 at 562.752 kb on + strand, within MPMX20_00540 at 562.760 kb on - strand, within MPMX20_00540 at 562.760 kb on - strand, within MPMX20_00540 at 562.765 kb on - strand, within MPMX20_00540 at 562.772 kb on - strand, within MPMX20_00540 at 562.793 kb on + strand, within MPMX20_00540 at 562.838 kb on + strand, within MPMX20_00540 at 562.863 kb on - strand, within MPMX20_00540 at 562.863 kb on - strand, within MPMX20_00540 at 562.870 kb on + strand, within MPMX20_00540 at 562.945 kb on - strand at 562.950 kb on - strand at 562.950 kb on - strand at 562.995 kb on + strand at 562.995 kb on + strand at 563.003 kb on - strand at 563.003 kb on - strand at 563.055 kb on + strand at 563.110 kb on + strand at 563.110 kb on + strand at 563.110 kb on + strand at 563.111 kb on + strand at 563.111 kb on + strand at 563.118 kb on - strand at 563.142 kb on - strand at 563.212 kb on - strand at 563.356 kb on - strand at 563.383 kb on + strand at 563.383 kb on + strand at 563.383 kb on + strand at 563.391 kb on - strand at 563.398 kb on + strand at 563.421 kb on + strand at 563.424 kb on + strand at 563.432 kb on - strand at 563.450 kb on - strand at 563.613 kb on + strand, within MPMX20_00541 at 563.704 kb on + strand, within MPMX20_00541 at 563.737 kb on - strand, within MPMX20_00541 at 563.824 kb on + strand, within MPMX20_00541 at 563.856 kb on - strand, within MPMX20_00541 at 563.928 kb on + strand, within MPMX20_00541 at 563.928 kb on + strand, within MPMX20_00541 at 563.936 kb on - strand, within MPMX20_00541 at 563.936 kb on - strand, within MPMX20_00541 at 563.962 kb on + strand, within MPMX20_00541 at 563.962 kb on + strand, within MPMX20_00541 at 563.962 kb on + strand, within MPMX20_00541 at 563.970 kb on - strand, within MPMX20_00541 at 563.970 kb on - strand, within MPMX20_00541 at 563.998 kb on - strand, within MPMX20_00541 at 564.000 kb on + strand, within MPMX20_00541 at 564.005 kb on + strand, within MPMX20_00541 at 564.008 kb on - strand, within MPMX20_00541 at 564.070 kb on + strand, within MPMX20_00541 at 564.083 kb on - strand, within MPMX20_00541 at 564.093 kb on + strand, within MPMX20_00541 at 564.093 kb on + strand, within MPMX20_00541 at 564.101 kb on - strand, within MPMX20_00541 at 564.101 kb on - strand, within MPMX20_00541 at 564.118 kb on + strand, within MPMX20_00541 at 564.118 kb on + strand, within MPMX20_00541 at 564.126 kb on - strand, within MPMX20_00541
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose plate, 1:1 coculture with Enterobacter_ludwigii_PH2 remove 559,449 + MPMX20_00539 0.37 -1.2 559,462 - MPMX20_00539 0.38 -0.3 559,521 + MPMX20_00539 0.44 -0.8 559,553 + MPMX20_00539 0.48 +2.2 559,555 + MPMX20_00539 0.48 +0.3 559,568 + MPMX20_00539 0.49 -0.6 559,604 - MPMX20_00539 0.53 -0.8 559,606 + MPMX20_00539 0.53 +2.8 559,641 - MPMX20_00539 0.57 -1.3 559,657 - MPMX20_00539 0.59 -1.8 559,679 + MPMX20_00539 0.61 -3.5 559,679 + MPMX20_00539 0.61 -1.0 559,679 + MPMX20_00539 0.61 +2.0 559,708 + MPMX20_00539 0.64 -1.9 559,738 + MPMX20_00539 0.67 -0.5 559,767 + MPMX20_00539 0.70 -1.7 559,775 - MPMX20_00539 0.71 +0.9 559,781 + MPMX20_00539 0.72 +0.1 559,800 + MPMX20_00539 0.74 -2.9 559,808 - MPMX20_00539 0.75 -0.5 559,808 - MPMX20_00539 0.75 -3.2 559,808 - MPMX20_00539 0.75 +0.8 559,909 - MPMX20_00539 0.85 -1.5 560,013 - -2.0 560,057 - -3.5 560,075 - -0.0 560,077 + +0.3 560,077 + -0.7 560,087 + -0.0 560,087 + +1.8 560,087 + -0.8 560,095 - -2.9 560,095 - +1.6 560,102 - -0.5 560,116 + -0.6 560,152 + -2.1 560,154 + -3.5 560,154 + -1.1 560,154 + -1.5 560,154 + -1.1 560,154 + -1.5 560,154 + -1.4 560,154 + -2.9 560,154 + -0.3 560,162 - +2.7 560,162 - -0.8 560,162 - +4.4 560,162 - -0.6 560,162 - +0.2 560,162 - -0.9 560,162 - -1.5 560,162 - -0.8 560,162 - -2.9 560,162 - -0.9 560,162 - +1.0 560,162 - -2.1 560,162 - +1.7 560,162 - +1.3 560,188 + -0.5 560,188 + +0.5 560,194 + +2.4 560,194 + -2.0 560,194 + +0.9 560,195 - -1.9 560,202 - -1.2 560,202 - -1.6 560,202 - -1.1 560,202 - +0.5 560,202 - +0.1 560,242 + +1.2 560,310 - -2.9 560,371 - +0.8 560,489 - -2.1 560,499 + -1.8 560,499 + -1.5 560,507 - -0.2 560,542 - -1.3 560,566 + -0.9 560,566 + -2.2 560,619 + -2.0 560,683 - -2.2 560,711 + -2.8 560,726 + MPMX20_00540 0.11 -0.4 560,734 - MPMX20_00540 0.11 +0.5 560,742 + MPMX20_00540 0.11 -2.0 560,750 - MPMX20_00540 0.11 +0.2 560,761 + MPMX20_00540 0.12 +0.2 560,769 - MPMX20_00540 0.12 +0.6 560,819 + MPMX20_00540 0.14 -1.8 560,842 + MPMX20_00540 0.15 -1.2 560,851 + MPMX20_00540 0.15 -0.0 560,859 - MPMX20_00540 0.15 -3.4 560,877 - MPMX20_00540 0.16 -3.4 560,881 - MPMX20_00540 0.16 -3.9 560,895 + MPMX20_00540 0.17 -2.5 560,959 + MPMX20_00540 0.19 -3.4 560,959 + MPMX20_00540 0.19 -1.0 560,964 + MPMX20_00540 0.19 -0.5 560,964 + MPMX20_00540 0.19 -1.9 560,967 - MPMX20_00540 0.19 -0.2 560,972 - MPMX20_00540 0.20 -2.6 560,972 - MPMX20_00540 0.20 -3.0 561,033 - MPMX20_00540 0.22 -2.6 561,038 + MPMX20_00540 0.22 -1.6 561,065 - MPMX20_00540 0.23 +0.1 561,074 + MPMX20_00540 0.23 -2.0 561,126 + MPMX20_00540 0.25 -3.2 561,134 - MPMX20_00540 0.26 +1.8 561,134 - MPMX20_00540 0.26 +0.8 561,134 - MPMX20_00540 0.26 +0.2 561,179 - MPMX20_00540 0.27 -1.1 561,188 - MPMX20_00540 0.28 -0.0 561,191 - MPMX20_00540 0.28 -4.2 561,235 + MPMX20_00540 0.29 -1.2 561,261 - MPMX20_00540 0.30 -1.3 561,328 + MPMX20_00540 0.33 -0.7 561,374 + MPMX20_00540 0.34 -3.3 561,379 + MPMX20_00540 0.35 -0.8 561,383 - MPMX20_00540 0.35 +1.2 561,425 + MPMX20_00540 0.36 -2.5 561,441 - MPMX20_00540 0.37 -1.3 561,521 + MPMX20_00540 0.40 -3.8 561,523 + MPMX20_00540 0.40 -2.8 561,541 - MPMX20_00540 0.41 -0.5 561,605 - MPMX20_00540 0.43 -0.7 561,647 + MPMX20_00540 0.45 -4.4 561,657 + MPMX20_00540 0.45 -2.1 561,665 - MPMX20_00540 0.45 -0.5 561,672 + MPMX20_00540 0.45 -0.1 561,680 - MPMX20_00540 0.46 -2.7 561,723 - MPMX20_00540 0.47 -3.1 561,723 - MPMX20_00540 0.47 -0.9 561,820 - MPMX20_00540 0.51 -3.5 561,857 + MPMX20_00540 0.52 +0.5 561,889 - MPMX20_00540 0.53 -0.9 561,895 - MPMX20_00540 0.54 -1.6 561,935 - MPMX20_00540 0.55 -2.2 561,972 + MPMX20_00540 0.57 -1.3 561,992 - MPMX20_00540 0.57 -0.6 562,257 - MPMX20_00540 0.67 +1.8 562,264 + MPMX20_00540 0.67 -2.5 562,272 - MPMX20_00540 0.68 -0.9 562,279 + MPMX20_00540 0.68 -0.4 562,315 - MPMX20_00540 0.69 -0.4 562,344 - MPMX20_00540 0.70 -1.5 562,358 - MPMX20_00540 0.71 +0.5 562,389 + MPMX20_00540 0.72 -1.0 562,489 - MPMX20_00540 0.76 -0.4 562,631 + MPMX20_00540 0.81 -3.9 562,640 - MPMX20_00540 0.81 -0.9 562,728 + MPMX20_00540 0.84 -4.1 562,752 + MPMX20_00540 0.85 +2.5 562,760 - MPMX20_00540 0.86 -1.7 562,760 - MPMX20_00540 0.86 +1.5 562,765 - MPMX20_00540 0.86 -4.9 562,772 - MPMX20_00540 0.86 -1.7 562,793 + MPMX20_00540 0.87 -1.4 562,838 + MPMX20_00540 0.88 -2.8 562,863 - MPMX20_00540 0.89 -2.7 562,863 - MPMX20_00540 0.89 -1.6 562,870 + MPMX20_00540 0.90 -3.0 562,945 - -1.7 562,950 - -4.0 562,950 - +0.5 562,995 + -3.6 562,995 + -0.5 563,003 - -1.0 563,003 - -2.0 563,055 + -1.7 563,110 + -3.0 563,110 + -2.3 563,110 + -3.1 563,111 + +2.8 563,111 + -2.7 563,118 - -2.8 563,142 - -2.3 563,212 - -2.0 563,356 - -0.0 563,383 + -0.3 563,383 + +1.2 563,383 + +1.5 563,391 - -4.1 563,398 + +1.5 563,421 + -0.2 563,424 + -0.7 563,432 - +0.2 563,450 - +1.2 563,613 + MPMX20_00541 0.13 +0.1 563,704 + MPMX20_00541 0.17 +0.8 563,737 - MPMX20_00541 0.18 -1.1 563,824 + MPMX20_00541 0.22 +1.0 563,856 - MPMX20_00541 0.23 -2.7 563,928 + MPMX20_00541 0.26 -0.0 563,928 + MPMX20_00541 0.26 -0.4 563,936 - MPMX20_00541 0.27 -1.7 563,936 - MPMX20_00541 0.27 -0.2 563,962 + MPMX20_00541 0.28 +0.9 563,962 + MPMX20_00541 0.28 -0.4 563,962 + MPMX20_00541 0.28 +4.2 563,970 - MPMX20_00541 0.28 -1.7 563,970 - MPMX20_00541 0.28 +2.3 563,998 - MPMX20_00541 0.29 -1.4 564,000 + MPMX20_00541 0.29 -1.8 564,005 + MPMX20_00541 0.30 -1.5 564,008 - MPMX20_00541 0.30 +2.3 564,070 + MPMX20_00541 0.32 -0.4 564,083 - MPMX20_00541 0.33 -3.4 564,093 + MPMX20_00541 0.33 -0.2 564,093 + MPMX20_00541 0.33 -1.1 564,101 - MPMX20_00541 0.34 +0.1 564,101 - MPMX20_00541 0.34 +0.8 564,118 + MPMX20_00541 0.34 -2.4 564,118 + MPMX20_00541 0.34 +2.6 564,126 - MPMX20_00541 0.35 +0.1
Or see this region's nucleotide sequence