Experiment: RCH2_defined_glucose plate, 1:1 coculture with Enterobacter_ludwigii_PH2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00239 and MPMX20_00240 are separated by 92 nucleotides MPMX20_00240 and MPMX20_00241 are separated by 375 nucleotides
MPMX20_00239: MPMX20_00239 - Pantothenate precursors transporter PanS, at 255,091 to 256,035
_00239
MPMX20_00240: MPMX20_00240 - Lysine-sensitive aspartokinase 3, at 256,128 to 257,477
_00240
MPMX20_00241: MPMX20_00241 - Glucose-6-phosphate isomerase, at 257,853 to 259,502
_00241
Position (kb) 256
257
258 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 255.141 kb on - strand at 255.143 kb on + strand at 255.146 kb on - strand at 255.160 kb on - strand at 255.185 kb on + strand at 255.193 kb on - strand, within MPMX20_00239 at 255.198 kb on - strand, within MPMX20_00239 at 255.210 kb on - strand, within MPMX20_00239 at 255.230 kb on + strand, within MPMX20_00239 at 255.240 kb on + strand, within MPMX20_00239 at 255.243 kb on - strand, within MPMX20_00239 at 255.248 kb on - strand, within MPMX20_00239 at 255.248 kb on - strand, within MPMX20_00239 at 255.248 kb on - strand, within MPMX20_00239 at 255.259 kb on + strand, within MPMX20_00239 at 255.260 kb on - strand, within MPMX20_00239 at 255.285 kb on + strand, within MPMX20_00239 at 255.311 kb on - strand, within MPMX20_00239 at 255.316 kb on - strand, within MPMX20_00239 at 255.345 kb on + strand, within MPMX20_00239 at 255.345 kb on - strand, within MPMX20_00239 at 255.428 kb on + strand, within MPMX20_00239 at 255.467 kb on + strand, within MPMX20_00239 at 255.467 kb on + strand, within MPMX20_00239 at 255.475 kb on - strand, within MPMX20_00239 at 255.475 kb on - strand, within MPMX20_00239 at 255.477 kb on + strand, within MPMX20_00239 at 255.523 kb on + strand, within MPMX20_00239 at 255.526 kb on - strand, within MPMX20_00239 at 255.565 kb on - strand, within MPMX20_00239 at 255.565 kb on - strand, within MPMX20_00239 at 255.572 kb on + strand, within MPMX20_00239 at 255.584 kb on + strand, within MPMX20_00239 at 255.592 kb on - strand, within MPMX20_00239 at 255.607 kb on - strand, within MPMX20_00239 at 255.752 kb on - strand, within MPMX20_00239 at 255.752 kb on - strand, within MPMX20_00239 at 255.752 kb on - strand, within MPMX20_00239 at 255.757 kb on + strand, within MPMX20_00239 at 255.884 kb on + strand, within MPMX20_00239 at 255.916 kb on - strand, within MPMX20_00239 at 255.937 kb on - strand, within MPMX20_00239 at 255.958 kb on - strand at 255.986 kb on + strand at 255.996 kb on - strand at 256.018 kb on + strand at 256.027 kb on + strand at 256.095 kb on + strand at 256.222 kb on - strand at 256.232 kb on - strand at 256.262 kb on - strand at 256.297 kb on + strand, within MPMX20_00240 at 256.344 kb on + strand, within MPMX20_00240 at 256.352 kb on - strand, within MPMX20_00240 at 256.385 kb on + strand, within MPMX20_00240 at 256.419 kb on - strand, within MPMX20_00240 at 256.447 kb on - strand, within MPMX20_00240 at 256.447 kb on - strand, within MPMX20_00240 at 256.447 kb on - strand, within MPMX20_00240 at 256.536 kb on + strand, within MPMX20_00240 at 256.548 kb on - strand, within MPMX20_00240 at 256.613 kb on + strand, within MPMX20_00240 at 256.698 kb on + strand, within MPMX20_00240 at 256.706 kb on - strand, within MPMX20_00240 at 256.854 kb on + strand, within MPMX20_00240 at 256.857 kb on - strand, within MPMX20_00240 at 256.864 kb on + strand, within MPMX20_00240 at 256.864 kb on + strand, within MPMX20_00240 at 256.897 kb on + strand, within MPMX20_00240 at 256.900 kb on - strand, within MPMX20_00240 at 256.900 kb on - strand, within MPMX20_00240 at 256.913 kb on - strand, within MPMX20_00240 at 256.913 kb on - strand, within MPMX20_00240 at 256.913 kb on - strand, within MPMX20_00240 at 256.913 kb on - strand, within MPMX20_00240 at 256.913 kb on - strand, within MPMX20_00240 at 256.929 kb on + strand, within MPMX20_00240 at 256.932 kb on - strand, within MPMX20_00240 at 256.943 kb on + strand, within MPMX20_00240 at 257.009 kb on + strand, within MPMX20_00240 at 257.019 kb on + strand, within MPMX20_00240 at 257.044 kb on + strand, within MPMX20_00240 at 257.044 kb on + strand, within MPMX20_00240 at 257.054 kb on + strand, within MPMX20_00240 at 257.054 kb on + strand, within MPMX20_00240 at 257.061 kb on + strand, within MPMX20_00240 at 257.062 kb on - strand, within MPMX20_00240 at 257.074 kb on + strand, within MPMX20_00240 at 257.083 kb on - strand, within MPMX20_00240 at 257.115 kb on + strand, within MPMX20_00240 at 257.150 kb on + strand, within MPMX20_00240 at 257.150 kb on + strand, within MPMX20_00240 at 257.153 kb on - strand, within MPMX20_00240 at 257.184 kb on - strand, within MPMX20_00240 at 257.184 kb on - strand, within MPMX20_00240 at 257.256 kb on - strand, within MPMX20_00240 at 257.257 kb on - strand, within MPMX20_00240 at 257.281 kb on + strand, within MPMX20_00240 at 257.281 kb on + strand, within MPMX20_00240 at 257.289 kb on - strand, within MPMX20_00240 at 257.317 kb on + strand, within MPMX20_00240 at 257.325 kb on - strand, within MPMX20_00240 at 257.356 kb on - strand at 257.367 kb on - strand at 257.367 kb on - strand at 257.402 kb on + strand at 257.423 kb on - strand at 257.446 kb on - strand at 257.504 kb on + strand at 257.540 kb on - strand at 257.617 kb on + strand at 257.628 kb on - strand at 257.640 kb on + strand at 257.640 kb on + strand at 257.667 kb on + strand at 257.675 kb on - strand at 257.686 kb on - strand at 257.697 kb on - strand at 257.700 kb on + strand at 257.702 kb on + strand at 257.710 kb on - strand at 257.710 kb on - strand at 257.710 kb on - strand at 257.729 kb on - strand at 257.745 kb on - strand at 257.759 kb on + strand at 257.759 kb on + strand at 257.759 kb on + strand at 257.759 kb on + strand at 257.759 kb on + strand at 257.759 kb on + strand at 257.759 kb on + strand at 257.759 kb on + strand at 257.759 kb on + strand at 257.759 kb on + strand at 257.759 kb on + strand at 257.759 kb on + strand at 257.759 kb on + strand at 257.759 kb on + strand at 257.759 kb on + strand at 257.759 kb on + strand at 257.759 kb on + strand at 257.759 kb on + strand at 257.759 kb on + strand at 257.759 kb on + strand at 257.759 kb on + strand at 257.759 kb on + strand at 257.759 kb on + strand at 257.759 kb on + strand at 257.759 kb on + strand at 257.759 kb on + strand at 257.759 kb on + strand at 257.759 kb on + strand at 257.759 kb on + strand at 257.759 kb on + strand at 257.759 kb on + strand at 257.759 kb on + strand at 257.759 kb on + strand at 257.759 kb on + strand at 257.759 kb on + strand at 257.759 kb on + strand at 257.759 kb on + strand at 257.759 kb on + strand at 257.759 kb on + strand at 257.759 kb on + strand at 257.759 kb on + strand at 257.759 kb on + strand at 257.759 kb on + strand at 257.759 kb on + strand at 257.759 kb on + strand at 257.759 kb on + strand at 257.759 kb on + strand at 257.759 kb on + strand at 257.759 kb on + strand at 257.759 kb on + strand at 257.759 kb on + strand at 257.759 kb on + strand at 257.759 kb on + strand at 257.759 kb on + strand at 257.759 kb on + strand at 257.759 kb on + strand at 257.759 kb on + strand at 257.759 kb on + strand at 257.759 kb on + strand at 257.759 kb on + strand at 257.759 kb on + strand at 257.759 kb on + strand at 257.759 kb on + strand at 257.759 kb on + strand at 257.759 kb on + strand at 257.759 kb on + strand at 257.759 kb on + strand at 257.759 kb on + strand at 257.759 kb on + strand at 257.767 kb on - strand at 257.767 kb on - strand at 257.767 kb on - strand at 257.767 kb on - strand at 257.767 kb on - strand at 257.767 kb on - strand at 257.767 kb on - strand at 257.767 kb on - strand at 257.767 kb on - strand at 257.767 kb on - strand at 257.767 kb on - strand at 257.767 kb on - strand at 257.767 kb on - strand at 257.767 kb on - strand at 257.767 kb on - strand at 257.767 kb on - strand at 257.767 kb on - strand at 257.767 kb on - strand at 257.767 kb on - strand at 257.767 kb on - strand at 257.767 kb on - strand at 257.767 kb on - strand at 257.767 kb on - strand at 257.767 kb on - strand at 257.767 kb on - strand at 257.767 kb on - strand at 257.767 kb on - strand at 257.767 kb on - strand at 257.767 kb on - strand at 257.767 kb on - strand at 257.767 kb on - strand at 257.767 kb on - strand at 257.767 kb on - strand at 257.767 kb on - strand at 257.767 kb on - strand at 257.767 kb on - strand at 257.767 kb on - strand at 257.767 kb on - strand at 257.767 kb on - strand at 257.767 kb on - strand at 257.767 kb on - strand at 257.767 kb on - strand at 257.767 kb on - strand at 257.767 kb on - strand at 257.767 kb on - strand at 257.767 kb on - strand at 257.767 kb on - strand at 257.767 kb on - strand at 257.767 kb on - strand at 257.767 kb on - strand at 257.767 kb on - strand at 257.767 kb on - strand at 257.767 kb on - strand at 257.767 kb on - strand at 257.767 kb on - strand at 257.806 kb on + strand at 257.834 kb on + strand at 257.842 kb on - strand at 257.866 kb on + strand at 257.866 kb on + strand at 257.866 kb on + strand at 257.866 kb on + strand at 257.874 kb on - strand at 257.874 kb on - strand at 257.874 kb on - strand at 257.874 kb on - strand at 257.879 kb on - strand at 257.891 kb on - strand at 257.906 kb on - strand at 257.940 kb on - strand at 257.972 kb on + strand at 257.992 kb on + strand at 258.000 kb on - strand at 258.067 kb on + strand, within MPMX20_00241 at 258.067 kb on + strand, within MPMX20_00241 at 258.077 kb on + strand, within MPMX20_00241 at 258.129 kb on - strand, within MPMX20_00241 at 258.133 kb on + strand, within MPMX20_00241 at 258.141 kb on - strand, within MPMX20_00241 at 258.155 kb on + strand, within MPMX20_00241 at 258.198 kb on - strand, within MPMX20_00241 at 258.238 kb on - strand, within MPMX20_00241 at 258.273 kb on + strand, within MPMX20_00241 at 258.322 kb on + strand, within MPMX20_00241 at 258.322 kb on + strand, within MPMX20_00241 at 258.322 kb on + strand, within MPMX20_00241 at 258.327 kb on + strand, within MPMX20_00241 at 258.330 kb on - strand, within MPMX20_00241 at 258.389 kb on - strand, within MPMX20_00241 at 258.401 kb on + strand, within MPMX20_00241 at 258.414 kb on - strand, within MPMX20_00241 at 258.426 kb on + strand, within MPMX20_00241 at 258.426 kb on + strand, within MPMX20_00241 at 258.458 kb on + strand, within MPMX20_00241 at 258.466 kb on - strand, within MPMX20_00241 at 258.466 kb on - strand, within MPMX20_00241
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose plate, 1:1 coculture with Enterobacter_ludwigii_PH2 remove 255,141 - -0.0 255,143 + +1.0 255,146 - +0.9 255,160 - -3.5 255,185 + +0.6 255,193 - MPMX20_00239 0.11 -1.6 255,198 - MPMX20_00239 0.11 +0.0 255,210 - MPMX20_00239 0.13 -1.9 255,230 + MPMX20_00239 0.15 +1.2 255,240 + MPMX20_00239 0.16 -0.6 255,243 - MPMX20_00239 0.16 -1.1 255,248 - MPMX20_00239 0.17 -2.2 255,248 - MPMX20_00239 0.17 -2.6 255,248 - MPMX20_00239 0.17 +1.8 255,259 + MPMX20_00239 0.18 -1.4 255,260 - MPMX20_00239 0.18 +1.8 255,285 + MPMX20_00239 0.21 -0.6 255,311 - MPMX20_00239 0.23 -0.8 255,316 - MPMX20_00239 0.24 +0.9 255,345 + MPMX20_00239 0.27 -0.5 255,345 - MPMX20_00239 0.27 -1.3 255,428 + MPMX20_00239 0.36 -2.0 255,467 + MPMX20_00239 0.40 -0.3 255,467 + MPMX20_00239 0.40 +0.4 255,475 - MPMX20_00239 0.41 -0.5 255,475 - MPMX20_00239 0.41 -1.0 255,477 + MPMX20_00239 0.41 -2.9 255,523 + MPMX20_00239 0.46 -0.2 255,526 - MPMX20_00239 0.46 +0.3 255,565 - MPMX20_00239 0.50 -2.0 255,565 - MPMX20_00239 0.50 -0.0 255,572 + MPMX20_00239 0.51 +1.2 255,584 + MPMX20_00239 0.52 -0.0 255,592 - MPMX20_00239 0.53 +1.2 255,607 - MPMX20_00239 0.55 -0.0 255,752 - MPMX20_00239 0.70 +1.8 255,752 - MPMX20_00239 0.70 -0.9 255,752 - MPMX20_00239 0.70 -1.8 255,757 + MPMX20_00239 0.70 -2.8 255,884 + MPMX20_00239 0.84 +3.1 255,916 - MPMX20_00239 0.87 -1.8 255,937 - MPMX20_00239 0.90 -0.4 255,958 - -0.9 255,986 + -0.7 255,996 - -0.2 256,018 + -0.1 256,027 + -2.6 256,095 + -1.9 256,222 - -1.1 256,232 - -0.2 256,262 - -1.3 256,297 + MPMX20_00240 0.13 -1.7 256,344 + MPMX20_00240 0.16 -2.6 256,352 - MPMX20_00240 0.17 -2.2 256,385 + MPMX20_00240 0.19 -0.0 256,419 - MPMX20_00240 0.22 -4.1 256,447 - MPMX20_00240 0.24 -2.0 256,447 - MPMX20_00240 0.24 -0.3 256,447 - MPMX20_00240 0.24 -1.6 256,536 + MPMX20_00240 0.30 -2.5 256,548 - MPMX20_00240 0.31 +0.8 256,613 + MPMX20_00240 0.36 -0.2 256,698 + MPMX20_00240 0.42 -1.5 256,706 - MPMX20_00240 0.43 -2.4 256,854 + MPMX20_00240 0.54 +0.8 256,857 - MPMX20_00240 0.54 -1.0 256,864 + MPMX20_00240 0.55 -0.4 256,864 + MPMX20_00240 0.55 -0.9 256,897 + MPMX20_00240 0.57 -2.2 256,900 - MPMX20_00240 0.57 -1.6 256,900 - MPMX20_00240 0.57 -0.9 256,913 - MPMX20_00240 0.58 -0.9 256,913 - MPMX20_00240 0.58 -2.2 256,913 - MPMX20_00240 0.58 -1.3 256,913 - MPMX20_00240 0.58 -1.5 256,913 - MPMX20_00240 0.58 -3.0 256,929 + MPMX20_00240 0.59 -0.8 256,932 - MPMX20_00240 0.60 +0.4 256,943 + MPMX20_00240 0.60 -1.6 257,009 + MPMX20_00240 0.65 -0.7 257,019 + MPMX20_00240 0.66 +0.8 257,044 + MPMX20_00240 0.68 +0.2 257,044 + MPMX20_00240 0.68 +0.4 257,054 + MPMX20_00240 0.69 +2.2 257,054 + MPMX20_00240 0.69 +1.0 257,061 + MPMX20_00240 0.69 -1.7 257,062 - MPMX20_00240 0.69 -2.2 257,074 + MPMX20_00240 0.70 -0.1 257,083 - MPMX20_00240 0.71 -2.5 257,115 + MPMX20_00240 0.73 -2.9 257,150 + MPMX20_00240 0.76 -2.1 257,150 + MPMX20_00240 0.76 -1.8 257,153 - MPMX20_00240 0.76 -2.9 257,184 - MPMX20_00240 0.78 -1.1 257,184 - MPMX20_00240 0.78 -1.1 257,256 - MPMX20_00240 0.84 -0.6 257,257 - MPMX20_00240 0.84 -1.1 257,281 + MPMX20_00240 0.85 +3.8 257,281 + MPMX20_00240 0.85 -3.0 257,289 - MPMX20_00240 0.86 -2.2 257,317 + MPMX20_00240 0.88 -0.1 257,325 - MPMX20_00240 0.89 -2.1 257,356 - -2.1 257,367 - -2.2 257,367 - -0.8 257,402 + -2.7 257,423 - -1.2 257,446 - -2.2 257,504 + +1.2 257,540 - -0.4 257,617 + +1.3 257,628 - +0.8 257,640 + -0.9 257,640 + -1.2 257,667 + +0.8 257,675 - +0.4 257,686 - -0.4 257,697 - -0.3 257,700 + -2.1 257,702 + -1.4 257,710 - +0.8 257,710 - -1.9 257,710 - +1.8 257,729 - -2.3 257,745 - +0.1 257,759 + +2.8 257,759 + -1.0 257,759 + +4.1 257,759 + -1.9 257,759 + +2.8 257,759 + +0.4 257,759 + +1.1 257,759 + +0.8 257,759 + -0.7 257,759 + -0.4 257,759 + +0.5 257,759 + +0.9 257,759 + -0.3 257,759 + +0.6 257,759 + -1.1 257,759 + -3.2 257,759 + +0.7 257,759 + -1.5 257,759 + -1.9 257,759 + -1.3 257,759 + -1.5 257,759 + -2.8 257,759 + +1.0 257,759 + -0.2 257,759 + -1.6 257,759 + -0.2 257,759 + +0.3 257,759 + +0.8 257,759 + -0.2 257,759 + +1.8 257,759 + -1.5 257,759 + -2.1 257,759 + -1.2 257,759 + +1.8 257,759 + +0.8 257,759 + +2.8 257,759 + -1.3 257,759 + -1.8 257,759 + +0.2 257,759 + +2.5 257,759 + -2.9 257,759 + -3.1 257,759 + -0.1 257,759 + +1.2 257,759 + +1.3 257,759 + -1.4 257,759 + -1.1 257,759 + +1.0 257,759 + +0.4 257,759 + +0.4 257,759 + -1.2 257,759 + +0.3 257,759 + -2.2 257,759 + +2.3 257,759 + -2.7 257,759 + -0.1 257,759 + +2.8 257,759 + -0.3 257,759 + -1.9 257,759 + -2.8 257,759 + +1.8 257,759 + +2.3 257,759 + -1.7 257,759 + -2.3 257,759 + -0.9 257,759 + +0.8 257,759 + +2.0 257,759 + -0.6 257,759 + -0.0 257,767 - -0.7 257,767 - +0.8 257,767 - +1.8 257,767 - -0.4 257,767 - +1.2 257,767 - +1.2 257,767 - +1.8 257,767 - +1.3 257,767 - +0.7 257,767 - -0.8 257,767 - -1.9 257,767 - +0.4 257,767 - +1.8 257,767 - +3.2 257,767 - -0.4 257,767 - -1.1 257,767 - +0.8 257,767 - +1.8 257,767 - -0.9 257,767 - -0.4 257,767 - +0.4 257,767 - +1.8 257,767 - +1.8 257,767 - -0.2 257,767 - -0.8 257,767 - -1.3 257,767 - -2.4 257,767 - +1.2 257,767 - -2.5 257,767 - +1.8 257,767 - +0.3 257,767 - -1.1 257,767 - -1.8 257,767 - -2.9 257,767 - +0.4 257,767 - +4.1 257,767 - -2.0 257,767 - +1.6 257,767 - -1.9 257,767 - -1.6 257,767 - +2.9 257,767 - -1.0 257,767 - +0.3 257,767 - -0.4 257,767 - -1.0 257,767 - -0.2 257,767 - +0.9 257,767 - -1.2 257,767 - -2.0 257,767 - +3.0 257,767 - -2.7 257,767 - -0.4 257,767 - +2.0 257,767 - +0.4 257,767 - -4.1 257,806 + +0.6 257,834 + -0.6 257,842 - -3.1 257,866 + +0.4 257,866 + -1.9 257,866 + -1.7 257,866 + +2.8 257,874 - -1.6 257,874 - -1.9 257,874 - -2.4 257,874 - -2.2 257,879 - -3.1 257,891 - -2.8 257,906 - +1.2 257,940 - -3.1 257,972 + -2.2 257,992 + -2.3 258,000 - -0.0 258,067 + MPMX20_00241 0.13 -2.9 258,067 + MPMX20_00241 0.13 -0.6 258,077 + MPMX20_00241 0.14 -1.8 258,129 - MPMX20_00241 0.17 +1.8 258,133 + MPMX20_00241 0.17 -0.4 258,141 - MPMX20_00241 0.17 -1.7 258,155 + MPMX20_00241 0.18 -2.6 258,198 - MPMX20_00241 0.21 -2.4 258,238 - MPMX20_00241 0.23 +0.4 258,273 + MPMX20_00241 0.25 -0.4 258,322 + MPMX20_00241 0.28 +0.8 258,322 + MPMX20_00241 0.28 -2.8 258,322 + MPMX20_00241 0.28 -1.0 258,327 + MPMX20_00241 0.29 -3.1 258,330 - MPMX20_00241 0.29 -2.2 258,389 - MPMX20_00241 0.32 -3.1 258,401 + MPMX20_00241 0.33 -2.7 258,414 - MPMX20_00241 0.34 -2.8 258,426 + MPMX20_00241 0.35 -1.5 258,426 + MPMX20_00241 0.35 -2.6 258,458 + MPMX20_00241 0.37 +1.2 258,466 - MPMX20_00241 0.37 -0.7 258,466 - MPMX20_00241 0.37 +0.8
Or see this region's nucleotide sequence