Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04447

Experiment: TSB plate, 1:1 coculture with Enterobacter_ludwigii_PH2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04445 and MPMX20_04446 overlap by 4 nucleotidesMPMX20_04446 and MPMX20_04447 are separated by 13 nucleotidesMPMX20_04447 and MPMX20_04448 are separated by 66 nucleotides MPMX20_04445: MPMX20_04445 - putative protein kinase UbiB, at 4,646,895 to 4,648,535 _04445 MPMX20_04446: MPMX20_04446 - Ubiquinone biosynthesis accessory factor UbiJ, at 4,648,532 to 4,649,137 _04446 MPMX20_04447: MPMX20_04447 - Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE, at 4,649,151 to 4,649,906 _04447 MPMX20_04448: MPMX20_04448 - hypothetical protein, at 4,649,973 to 4,651,430 _04448 Position (kb) 4649 4650Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4649.132 kb on - strandat 4649.949 kb on - strandat 4649.957 kb on - strandat 4650.247 kb on - strand, within MPMX20_04448at 4650.247 kb on - strand, within MPMX20_04448at 4650.247 kb on - strand, within MPMX20_04448at 4650.582 kb on - strand, within MPMX20_04448at 4650.582 kb on - strand, within MPMX20_04448at 4650.676 kb on + strand, within MPMX20_04448at 4650.767 kb on - strand, within MPMX20_04448at 4650.776 kb on + strand, within MPMX20_04448at 4650.776 kb on + strand, within MPMX20_04448at 4650.784 kb on - strand, within MPMX20_04448at 4650.784 kb on - strand, within MPMX20_04448at 4650.784 kb on - strand, within MPMX20_04448at 4650.822 kb on + strand, within MPMX20_04448at 4650.896 kb on + strand, within MPMX20_04448

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Enterobacter_ludwigii_PH2
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4,649,132 - +2.8
4,649,949 - -2.2
4,649,957 - +0.2
4,650,247 - MPMX20_04448 0.19 -2.0
4,650,247 - MPMX20_04448 0.19 -0.2
4,650,247 - MPMX20_04448 0.19 +0.8
4,650,582 - MPMX20_04448 0.42 -1.2
4,650,582 - MPMX20_04448 0.42 +0.7
4,650,676 + MPMX20_04448 0.48 +0.5
4,650,767 - MPMX20_04448 0.54 -0.2
4,650,776 + MPMX20_04448 0.55 +0.4
4,650,776 + MPMX20_04448 0.55 -0.7
4,650,784 - MPMX20_04448 0.56 -0.3
4,650,784 - MPMX20_04448 0.56 +0.8
4,650,784 - MPMX20_04448 0.56 -2.3
4,650,822 + MPMX20_04448 0.58 +1.2
4,650,896 + MPMX20_04448 0.63 +0.1

Or see this region's nucleotide sequence