Experiment: TSB plate, 1:1 coculture with Enterobacter_ludwigii_PH2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04436 and MPMX20_04437 are separated by 9 nucleotides MPMX20_04437 and MPMX20_04438 are separated by 182 nucleotides MPMX20_04438 and MPMX20_04439 are separated by 30 nucleotides
MPMX20_04436: MPMX20_04436 - Fatty acid oxidation complex subunit alpha, at 4,637,980 to 4,640,169
_04436
MPMX20_04437: MPMX20_04437 - 3-ketoacyl-CoA thiolase, at 4,640,179 to 4,641,342
_04437
MPMX20_04438: MPMX20_04438 - NAD(P)H-flavin reductase, at 4,641,525 to 4,642,226
_04438
MPMX20_04439: MPMX20_04439 - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, at 4,642,257 to 4,643,762
_04439
Position (kb)
4640
4641
4642 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 4639.252 kb on + strand, within MPMX20_04436 at 4639.302 kb on - strand, within MPMX20_04436 at 4639.329 kb on - strand, within MPMX20_04436 at 4639.339 kb on - strand, within MPMX20_04436 at 4639.340 kb on - strand, within MPMX20_04436 at 4639.515 kb on + strand, within MPMX20_04436 at 4639.608 kb on + strand, within MPMX20_04436 at 4639.627 kb on + strand, within MPMX20_04436 at 4639.630 kb on - strand, within MPMX20_04436 at 4639.794 kb on - strand, within MPMX20_04436 at 4639.838 kb on - strand, within MPMX20_04436 at 4639.884 kb on + strand, within MPMX20_04436 at 4639.904 kb on + strand, within MPMX20_04436 at 4639.904 kb on + strand, within MPMX20_04436 at 4640.064 kb on + strand at 4640.088 kb on + strand at 4640.121 kb on - strand at 4640.123 kb on - strand at 4640.140 kb on + strand at 4640.277 kb on + strand at 4640.303 kb on + strand, within MPMX20_04437 at 4640.303 kb on - strand, within MPMX20_04437 at 4640.308 kb on + strand, within MPMX20_04437 at 4640.348 kb on + strand, within MPMX20_04437 at 4640.348 kb on + strand, within MPMX20_04437 at 4640.348 kb on + strand, within MPMX20_04437 at 4640.348 kb on + strand, within MPMX20_04437 at 4640.348 kb on + strand, within MPMX20_04437 at 4640.348 kb on + strand, within MPMX20_04437 at 4640.356 kb on - strand, within MPMX20_04437 at 4640.356 kb on - strand, within MPMX20_04437 at 4640.356 kb on - strand, within MPMX20_04437 at 4640.356 kb on - strand, within MPMX20_04437 at 4640.356 kb on - strand, within MPMX20_04437 at 4640.356 kb on - strand, within MPMX20_04437 at 4640.360 kb on + strand, within MPMX20_04437 at 4640.360 kb on + strand, within MPMX20_04437 at 4640.368 kb on - strand, within MPMX20_04437 at 4640.368 kb on - strand, within MPMX20_04437 at 4640.370 kb on + strand, within MPMX20_04437 at 4640.509 kb on - strand, within MPMX20_04437 at 4640.509 kb on - strand, within MPMX20_04437 at 4640.514 kb on - strand, within MPMX20_04437 at 4640.519 kb on - strand, within MPMX20_04437 at 4640.528 kb on + strand, within MPMX20_04437 at 4640.548 kb on + strand, within MPMX20_04437 at 4640.581 kb on + strand, within MPMX20_04437 at 4640.581 kb on + strand, within MPMX20_04437 at 4640.589 kb on - strand, within MPMX20_04437 at 4640.589 kb on - strand, within MPMX20_04437 at 4640.589 kb on - strand, within MPMX20_04437 at 4640.686 kb on - strand, within MPMX20_04437 at 4640.795 kb on - strand, within MPMX20_04437 at 4640.800 kb on + strand, within MPMX20_04437 at 4640.800 kb on + strand, within MPMX20_04437 at 4640.842 kb on - strand, within MPMX20_04437 at 4640.880 kb on + strand, within MPMX20_04437 at 4640.881 kb on - strand, within MPMX20_04437 at 4640.896 kb on + strand, within MPMX20_04437 at 4640.965 kb on - strand, within MPMX20_04437 at 4641.072 kb on - strand, within MPMX20_04437 at 4641.100 kb on + strand, within MPMX20_04437 at 4641.129 kb on - strand, within MPMX20_04437 at 4641.139 kb on + strand, within MPMX20_04437 at 4641.231 kb on + strand at 4641.231 kb on + strand at 4641.236 kb on + strand at 4641.239 kb on - strand at 4641.239 kb on - strand at 4641.296 kb on + strand at 4641.296 kb on + strand at 4641.304 kb on - strand at 4641.306 kb on + strand at 4641.307 kb on + strand at 4641.307 kb on + strand at 4641.314 kb on - strand at 4641.327 kb on + strand at 4641.544 kb on + strand at 4642.246 kb on + strand at 4642.246 kb on - strand at 4642.246 kb on - strand at 4642.248 kb on + strand at 4642.256 kb on - strand at 4642.256 kb on - strand at 4642.256 kb on - strand at 4642.256 kb on - strand at 4642.256 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Enterobacter_ludwigii_PH2 remove 4,639,252 + MPMX20_04436 0.58 -0.5 4,639,302 - MPMX20_04436 0.60 +1.4 4,639,329 - MPMX20_04436 0.62 -2.9 4,639,339 - MPMX20_04436 0.62 +0.2 4,639,340 - MPMX20_04436 0.62 -1.2 4,639,515 + MPMX20_04436 0.70 -2.3 4,639,608 + MPMX20_04436 0.74 -2.3 4,639,627 + MPMX20_04436 0.75 +0.4 4,639,630 - MPMX20_04436 0.75 -1.1 4,639,794 - MPMX20_04436 0.83 -1.6 4,639,838 - MPMX20_04436 0.85 +0.3 4,639,884 + MPMX20_04436 0.87 -0.4 4,639,904 + MPMX20_04436 0.88 +0.4 4,639,904 + MPMX20_04436 0.88 -2.8 4,640,064 + -0.4 4,640,088 + +0.9 4,640,121 - -1.1 4,640,123 - -1.8 4,640,140 + -1.9 4,640,277 + -1.9 4,640,303 + MPMX20_04437 0.11 +1.0 4,640,303 - MPMX20_04437 0.11 +1.0 4,640,308 + MPMX20_04437 0.11 -0.1 4,640,348 + MPMX20_04437 0.15 -1.9 4,640,348 + MPMX20_04437 0.15 +2.1 4,640,348 + MPMX20_04437 0.15 -1.9 4,640,348 + MPMX20_04437 0.15 -0.6 4,640,348 + MPMX20_04437 0.15 -1.9 4,640,348 + MPMX20_04437 0.15 +1.1 4,640,356 - MPMX20_04437 0.15 -0.7 4,640,356 - MPMX20_04437 0.15 -0.6 4,640,356 - MPMX20_04437 0.15 -0.2 4,640,356 - MPMX20_04437 0.15 -0.5 4,640,356 - MPMX20_04437 0.15 -0.2 4,640,356 - MPMX20_04437 0.15 -1.7 4,640,360 + MPMX20_04437 0.16 -0.5 4,640,360 + MPMX20_04437 0.16 -3.7 4,640,368 - MPMX20_04437 0.16 -1.1 4,640,368 - MPMX20_04437 0.16 -2.4 4,640,370 + MPMX20_04437 0.16 -2.3 4,640,509 - MPMX20_04437 0.28 +0.3 4,640,509 - MPMX20_04437 0.28 -0.0 4,640,514 - MPMX20_04437 0.29 -2.1 4,640,519 - MPMX20_04437 0.29 -2.6 4,640,528 + MPMX20_04437 0.30 +0.4 4,640,548 + MPMX20_04437 0.32 -1.9 4,640,581 + MPMX20_04437 0.35 -0.5 4,640,581 + MPMX20_04437 0.35 -1.3 4,640,589 - MPMX20_04437 0.35 -0.5 4,640,589 - MPMX20_04437 0.35 -3.7 4,640,589 - MPMX20_04437 0.35 -1.4 4,640,686 - MPMX20_04437 0.44 -2.3 4,640,795 - MPMX20_04437 0.53 -1.7 4,640,800 + MPMX20_04437 0.53 -1.2 4,640,800 + MPMX20_04437 0.53 +1.4 4,640,842 - MPMX20_04437 0.57 +0.1 4,640,880 + MPMX20_04437 0.60 -2.4 4,640,881 - MPMX20_04437 0.60 -1.5 4,640,896 + MPMX20_04437 0.62 -2.0 4,640,965 - MPMX20_04437 0.68 -2.0 4,641,072 - MPMX20_04437 0.77 -1.5 4,641,100 + MPMX20_04437 0.79 +0.6 4,641,129 - MPMX20_04437 0.82 +0.1 4,641,139 + MPMX20_04437 0.82 +2.7 4,641,231 + -3.8 4,641,231 + +0.0 4,641,236 + -1.3 4,641,239 - +1.7 4,641,239 - +1.4 4,641,296 + +0.4 4,641,296 + +0.7 4,641,304 - -0.3 4,641,306 + -1.6 4,641,307 + -3.8 4,641,307 + -2.2 4,641,314 - +0.1 4,641,327 + +0.9 4,641,544 + -0.1 4,642,246 + +0.3 4,642,246 - +0.5 4,642,246 - -2.9 4,642,248 + -1.5 4,642,256 - -2.6 4,642,256 - +0.3 4,642,256 - +1.2 4,642,256 - -0.6 4,642,256 - -0.8
Or see this region's nucleotide sequence