Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04048

Experiment: TSB plate, 1:1 coculture with Enterobacter_ludwigii_PH2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04047 and MPMX20_04048 are separated by 12 nucleotidesMPMX20_04048 and MPMX20_04049 are separated by 16 nucleotides MPMX20_04047: MPMX20_04047 - PTS system maltose-specific EIICB component, at 4,244,366 to 4,245,937 _04047 MPMX20_04048: MPMX20_04048 - Cystathionine beta-lyase PatB, at 4,245,950 to 4,247,122 _04048 MPMX20_04049: MPMX20_04049 - hypothetical protein, at 4,247,139 to 4,249,028 _04049 Position (kb) 4245 4246 4247 4248Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6 7 8 9 10at 4244.970 kb on + strand, within MPMX20_04047at 4244.970 kb on + strand, within MPMX20_04047at 4244.978 kb on - strand, within MPMX20_04047at 4244.980 kb on + strand, within MPMX20_04047at 4244.983 kb on - strand, within MPMX20_04047at 4245.020 kb on - strand, within MPMX20_04047at 4245.026 kb on + strand, within MPMX20_04047at 4245.042 kb on + strand, within MPMX20_04047at 4245.048 kb on + strand, within MPMX20_04047at 4245.056 kb on - strand, within MPMX20_04047at 4245.066 kb on - strand, within MPMX20_04047at 4245.066 kb on - strand, within MPMX20_04047at 4245.066 kb on - strand, within MPMX20_04047at 4245.074 kb on - strand, within MPMX20_04047at 4245.128 kb on - strand, within MPMX20_04047at 4245.130 kb on + strand, within MPMX20_04047at 4245.138 kb on - strand, within MPMX20_04047at 4245.209 kb on - strand, within MPMX20_04047at 4245.216 kb on - strand, within MPMX20_04047at 4245.239 kb on - strand, within MPMX20_04047at 4245.242 kb on + strand, within MPMX20_04047at 4245.250 kb on - strand, within MPMX20_04047at 4245.268 kb on + strand, within MPMX20_04047at 4245.268 kb on + strand, within MPMX20_04047at 4245.313 kb on + strand, within MPMX20_04047at 4245.343 kb on + strand, within MPMX20_04047at 4245.399 kb on + strand, within MPMX20_04047at 4245.399 kb on + strand, within MPMX20_04047at 4245.399 kb on + strand, within MPMX20_04047at 4245.407 kb on - strand, within MPMX20_04047at 4245.442 kb on - strand, within MPMX20_04047at 4245.448 kb on + strand, within MPMX20_04047at 4245.463 kb on - strand, within MPMX20_04047at 4245.463 kb on - strand, within MPMX20_04047at 4245.581 kb on - strand, within MPMX20_04047at 4245.583 kb on + strand, within MPMX20_04047at 4245.593 kb on + strand, within MPMX20_04047at 4245.639 kb on + strand, within MPMX20_04047at 4245.649 kb on + strand, within MPMX20_04047at 4245.662 kb on - strand, within MPMX20_04047at 4245.717 kb on + strand, within MPMX20_04047at 4245.717 kb on + strand, within MPMX20_04047at 4245.717 kb on + strand, within MPMX20_04047at 4245.725 kb on - strand, within MPMX20_04047at 4245.738 kb on + strand, within MPMX20_04047at 4245.782 kb on - strandat 4245.811 kb on + strandat 4245.825 kb on + strandat 4245.873 kb on + strandat 4245.873 kb on + strandat 4245.873 kb on + strandat 4245.873 kb on + strandat 4245.881 kb on - strandat 4245.881 kb on - strandat 4245.881 kb on - strandat 4245.881 kb on - strandat 4245.942 kb on + strandat 4245.942 kb on + strandat 4245.950 kb on - strandat 4245.966 kb on + strandat 4246.011 kb on + strandat 4246.016 kb on - strandat 4246.018 kb on - strandat 4246.037 kb on - strandat 4246.057 kb on + strandat 4246.097 kb on + strand, within MPMX20_04048at 4246.102 kb on - strand, within MPMX20_04048at 4246.126 kb on + strand, within MPMX20_04048at 4246.144 kb on + strand, within MPMX20_04048at 4246.203 kb on + strand, within MPMX20_04048at 4246.206 kb on - strand, within MPMX20_04048at 4246.207 kb on - strand, within MPMX20_04048at 4246.234 kb on + strand, within MPMX20_04048at 4246.234 kb on + strand, within MPMX20_04048at 4246.256 kb on - strand, within MPMX20_04048at 4246.258 kb on + strand, within MPMX20_04048at 4246.258 kb on + strand, within MPMX20_04048at 4246.258 kb on + strand, within MPMX20_04048at 4246.266 kb on - strand, within MPMX20_04048at 4246.266 kb on - strand, within MPMX20_04048at 4246.266 kb on - strand, within MPMX20_04048at 4246.266 kb on - strand, within MPMX20_04048at 4246.266 kb on - strand, within MPMX20_04048at 4246.269 kb on - strand, within MPMX20_04048at 4246.294 kb on - strand, within MPMX20_04048at 4246.353 kb on - strand, within MPMX20_04048at 4246.437 kb on - strand, within MPMX20_04048at 4246.437 kb on - strand, within MPMX20_04048at 4246.437 kb on - strand, within MPMX20_04048at 4246.443 kb on + strand, within MPMX20_04048at 4246.451 kb on - strand, within MPMX20_04048at 4246.511 kb on + strand, within MPMX20_04048at 4246.518 kb on + strand, within MPMX20_04048at 4246.525 kb on - strand, within MPMX20_04048at 4246.545 kb on + strand, within MPMX20_04048at 4246.553 kb on - strand, within MPMX20_04048at 4246.564 kb on + strand, within MPMX20_04048at 4246.625 kb on + strand, within MPMX20_04048at 4246.625 kb on + strand, within MPMX20_04048at 4246.625 kb on + strand, within MPMX20_04048at 4246.625 kb on + strand, within MPMX20_04048at 4246.625 kb on + strand, within MPMX20_04048at 4246.625 kb on + strand, within MPMX20_04048at 4246.625 kb on + strand, within MPMX20_04048at 4246.625 kb on + strand, within MPMX20_04048at 4246.625 kb on + strand, within MPMX20_04048at 4246.625 kb on + strand, within MPMX20_04048at 4246.625 kb on + strand, within MPMX20_04048at 4246.625 kb on + strand, within MPMX20_04048at 4246.625 kb on + strand, within MPMX20_04048at 4246.625 kb on + strand, within MPMX20_04048at 4246.633 kb on - strand, within MPMX20_04048at 4246.633 kb on - strand, within MPMX20_04048at 4246.633 kb on - strand, within MPMX20_04048at 4246.633 kb on - strand, within MPMX20_04048at 4246.633 kb on - strand, within MPMX20_04048at 4246.633 kb on - strand, within MPMX20_04048at 4246.689 kb on - strand, within MPMX20_04048at 4246.729 kb on + strand, within MPMX20_04048at 4246.801 kb on - strand, within MPMX20_04048at 4246.863 kb on + strand, within MPMX20_04048at 4246.867 kb on + strand, within MPMX20_04048at 4246.871 kb on - strand, within MPMX20_04048at 4246.929 kb on - strand, within MPMX20_04048at 4246.930 kb on + strand, within MPMX20_04048at 4246.930 kb on + strand, within MPMX20_04048at 4246.935 kb on + strand, within MPMX20_04048at 4246.935 kb on + strand, within MPMX20_04048at 4246.938 kb on - strand, within MPMX20_04048at 4246.943 kb on - strand, within MPMX20_04048at 4246.943 kb on - strand, within MPMX20_04048at 4246.947 kb on + strand, within MPMX20_04048at 4246.950 kb on + strand, within MPMX20_04048at 4246.952 kb on + strand, within MPMX20_04048at 4246.955 kb on - strand, within MPMX20_04048at 4246.960 kb on - strand, within MPMX20_04048at 4246.960 kb on - strand, within MPMX20_04048at 4246.960 kb on - strand, within MPMX20_04048at 4246.960 kb on - strand, within MPMX20_04048at 4246.960 kb on - strand, within MPMX20_04048at 4246.978 kb on - strand, within MPMX20_04048at 4246.978 kb on - strand, within MPMX20_04048at 4247.016 kb on - strandat 4247.082 kb on + strandat 4247.082 kb on - strandat 4247.090 kb on - strandat 4247.090 kb on - strandat 4247.090 kb on - strandat 4247.090 kb on - strandat 4247.092 kb on + strandat 4247.100 kb on + strandat 4247.108 kb on + strandat 4247.128 kb on + strandat 4247.128 kb on + strandat 4247.224 kb on + strandat 4247.232 kb on - strandat 4247.257 kb on - strandat 4247.259 kb on - strandat 4247.285 kb on + strandat 4247.314 kb on + strandat 4247.320 kb on - strandat 4247.322 kb on - strandat 4247.379 kb on - strand, within MPMX20_04049at 4247.379 kb on - strand, within MPMX20_04049at 4247.379 kb on - strand, within MPMX20_04049at 4247.558 kb on + strand, within MPMX20_04049at 4247.573 kb on - strand, within MPMX20_04049at 4247.639 kb on - strand, within MPMX20_04049at 4247.655 kb on + strand, within MPMX20_04049at 4247.663 kb on - strand, within MPMX20_04049at 4247.716 kb on + strand, within MPMX20_04049at 4247.755 kb on + strand, within MPMX20_04049at 4247.836 kb on + strand, within MPMX20_04049at 4247.837 kb on + strand, within MPMX20_04049at 4247.844 kb on - strand, within MPMX20_04049at 4247.844 kb on - strand, within MPMX20_04049at 4247.851 kb on - strand, within MPMX20_04049at 4247.859 kb on - strand, within MPMX20_04049at 4247.862 kb on + strand, within MPMX20_04049at 4247.862 kb on + strand, within MPMX20_04049at 4247.880 kb on - strand, within MPMX20_04049at 4247.880 kb on - strand, within MPMX20_04049at 4248.003 kb on - strand, within MPMX20_04049at 4248.003 kb on - strand, within MPMX20_04049at 4248.005 kb on + strand, within MPMX20_04049at 4248.013 kb on - strand, within MPMX20_04049at 4248.027 kb on + strand, within MPMX20_04049at 4248.043 kb on + strand, within MPMX20_04049at 4248.045 kb on - strand, within MPMX20_04049at 4248.049 kb on + strand, within MPMX20_04049at 4248.108 kb on + strand, within MPMX20_04049at 4248.108 kb on + strand, within MPMX20_04049at 4248.108 kb on + strand, within MPMX20_04049at 4248.116 kb on - strand, within MPMX20_04049

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Enterobacter_ludwigii_PH2
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4,244,970 + MPMX20_04047 0.38 +0.7
4,244,970 + MPMX20_04047 0.38 +0.1
4,244,978 - MPMX20_04047 0.39 +0.8
4,244,980 + MPMX20_04047 0.39 +0.1
4,244,983 - MPMX20_04047 0.39 -1.9
4,245,020 - MPMX20_04047 0.42 -1.5
4,245,026 + MPMX20_04047 0.42 -0.9
4,245,042 + MPMX20_04047 0.43 +4.0
4,245,048 + MPMX20_04047 0.43 +0.8
4,245,056 - MPMX20_04047 0.44 -0.3
4,245,066 - MPMX20_04047 0.45 +0.4
4,245,066 - MPMX20_04047 0.45 -1.8
4,245,066 - MPMX20_04047 0.45 -0.9
4,245,074 - MPMX20_04047 0.45 +1.0
4,245,128 - MPMX20_04047 0.48 -3.6
4,245,130 + MPMX20_04047 0.49 +0.2
4,245,138 - MPMX20_04047 0.49 -0.9
4,245,209 - MPMX20_04047 0.54 -2.3
4,245,216 - MPMX20_04047 0.54 -0.2
4,245,239 - MPMX20_04047 0.56 -1.6
4,245,242 + MPMX20_04047 0.56 +0.0
4,245,250 - MPMX20_04047 0.56 -1.7
4,245,268 + MPMX20_04047 0.57 -1.7
4,245,268 + MPMX20_04047 0.57 -0.5
4,245,313 + MPMX20_04047 0.60 -1.9
4,245,343 + MPMX20_04047 0.62 -1.0
4,245,399 + MPMX20_04047 0.66 +1.6
4,245,399 + MPMX20_04047 0.66 -0.6
4,245,399 + MPMX20_04047 0.66 -0.1
4,245,407 - MPMX20_04047 0.66 -4.6
4,245,442 - MPMX20_04047 0.68 -0.7
4,245,448 + MPMX20_04047 0.69 +0.6
4,245,463 - MPMX20_04047 0.70 +1.0
4,245,463 - MPMX20_04047 0.70 -0.0
4,245,581 - MPMX20_04047 0.77 -0.4
4,245,583 + MPMX20_04047 0.77 -0.9
4,245,593 + MPMX20_04047 0.78 +1.2
4,245,639 + MPMX20_04047 0.81 +0.5
4,245,649 + MPMX20_04047 0.82 -1.0
4,245,662 - MPMX20_04047 0.82 +0.4
4,245,717 + MPMX20_04047 0.86 -0.2
4,245,717 + MPMX20_04047 0.86 +0.6
4,245,717 + MPMX20_04047 0.86 +0.6
4,245,725 - MPMX20_04047 0.86 -0.9
4,245,738 + MPMX20_04047 0.87 -1.0
4,245,782 - +2.2
4,245,811 + +0.2
4,245,825 + -0.5
4,245,873 + -1.7
4,245,873 + -0.5
4,245,873 + -0.3
4,245,873 + -2.0
4,245,881 - +0.8
4,245,881 - -2.1
4,245,881 - +0.5
4,245,881 - -1.5
4,245,942 + -1.6
4,245,942 + +0.7
4,245,950 - +0.1
4,245,966 + +4.0
4,246,011 + -1.6
4,246,016 - -0.5
4,246,018 - +0.6
4,246,037 - -3.4
4,246,057 + -0.7
4,246,097 + MPMX20_04048 0.13 -0.9
4,246,102 - MPMX20_04048 0.13 -0.9
4,246,126 + MPMX20_04048 0.15 -3.9
4,246,144 + MPMX20_04048 0.17 -1.3
4,246,203 + MPMX20_04048 0.22 +1.2
4,246,206 - MPMX20_04048 0.22 +0.4
4,246,207 - MPMX20_04048 0.22 +10.5
4,246,234 + MPMX20_04048 0.24 +1.0
4,246,234 + MPMX20_04048 0.24 -0.0
4,246,256 - MPMX20_04048 0.26 +0.0
4,246,258 + MPMX20_04048 0.26 -1.2
4,246,258 + MPMX20_04048 0.26 +2.0
4,246,258 + MPMX20_04048 0.26 -0.2
4,246,266 - MPMX20_04048 0.27 +1.0
4,246,266 - MPMX20_04048 0.27 +1.2
4,246,266 - MPMX20_04048 0.27 -1.8
4,246,266 - MPMX20_04048 0.27 -0.9
4,246,266 - MPMX20_04048 0.27 -1.0
4,246,269 - MPMX20_04048 0.27 +3.0
4,246,294 - MPMX20_04048 0.29 -0.2
4,246,353 - MPMX20_04048 0.34 +0.6
4,246,437 - MPMX20_04048 0.42 +0.1
4,246,437 - MPMX20_04048 0.42 -2.3
4,246,437 - MPMX20_04048 0.42 +0.8
4,246,443 + MPMX20_04048 0.42 -1.2
4,246,451 - MPMX20_04048 0.43 -1.5
4,246,511 + MPMX20_04048 0.48 +1.2
4,246,518 + MPMX20_04048 0.48 -1.1
4,246,525 - MPMX20_04048 0.49 -2.1
4,246,545 + MPMX20_04048 0.51 +0.6
4,246,553 - MPMX20_04048 0.51 -0.1
4,246,564 + MPMX20_04048 0.52 -0.0
4,246,625 + MPMX20_04048 0.58 +0.1
4,246,625 + MPMX20_04048 0.58 -1.8
4,246,625 + MPMX20_04048 0.58 -1.3
4,246,625 + MPMX20_04048 0.58 -0.2
4,246,625 + MPMX20_04048 0.58 +0.0
4,246,625 + MPMX20_04048 0.58 -0.5
4,246,625 + MPMX20_04048 0.58 -1.8
4,246,625 + MPMX20_04048 0.58 +2.1
4,246,625 + MPMX20_04048 0.58 +0.6
4,246,625 + MPMX20_04048 0.58 -1.4
4,246,625 + MPMX20_04048 0.58 +1.0
4,246,625 + MPMX20_04048 0.58 -1.7
4,246,625 + MPMX20_04048 0.58 +1.3
4,246,625 + MPMX20_04048 0.58 -3.6
4,246,633 - MPMX20_04048 0.58 -2.1
4,246,633 - MPMX20_04048 0.58 +2.7
4,246,633 - MPMX20_04048 0.58 +0.6
4,246,633 - MPMX20_04048 0.58 -2.6
4,246,633 - MPMX20_04048 0.58 +0.6
4,246,633 - MPMX20_04048 0.58 +0.4
4,246,689 - MPMX20_04048 0.63 -1.4
4,246,729 + MPMX20_04048 0.66 -2.7
4,246,801 - MPMX20_04048 0.73 -0.8
4,246,863 + MPMX20_04048 0.78 +1.7
4,246,867 + MPMX20_04048 0.78 -0.8
4,246,871 - MPMX20_04048 0.79 -2.0
4,246,929 - MPMX20_04048 0.83 -2.8
4,246,930 + MPMX20_04048 0.84 -2.1
4,246,930 + MPMX20_04048 0.84 -2.8
4,246,935 + MPMX20_04048 0.84 +0.1
4,246,935 + MPMX20_04048 0.84 -0.8
4,246,938 - MPMX20_04048 0.84 +1.7
4,246,943 - MPMX20_04048 0.85 +0.3
4,246,943 - MPMX20_04048 0.85 -1.1
4,246,947 + MPMX20_04048 0.85 -1.2
4,246,950 + MPMX20_04048 0.85 +1.9
4,246,952 + MPMX20_04048 0.85 -1.1
4,246,955 - MPMX20_04048 0.86 +0.7
4,246,960 - MPMX20_04048 0.86 +2.4
4,246,960 - MPMX20_04048 0.86 +0.3
4,246,960 - MPMX20_04048 0.86 -1.4
4,246,960 - MPMX20_04048 0.86 +0.6
4,246,960 - MPMX20_04048 0.86 +0.7
4,246,978 - MPMX20_04048 0.88 -0.8
4,246,978 - MPMX20_04048 0.88 -0.9
4,247,016 - +0.7
4,247,082 + +1.1
4,247,082 - +0.5
4,247,090 - +0.7
4,247,090 - +0.1
4,247,090 - +1.2
4,247,090 - -0.6
4,247,092 + +0.0
4,247,100 + -2.2
4,247,108 + -0.9
4,247,128 + -1.3
4,247,128 + -1.9
4,247,224 + -1.3
4,247,232 - -3.4
4,247,257 - -0.6
4,247,259 - -1.8
4,247,285 + -2.3
4,247,314 + -1.2
4,247,320 - -3.1
4,247,322 - +1.6
4,247,379 - MPMX20_04049 0.13 +0.4
4,247,379 - MPMX20_04049 0.13 -0.5
4,247,379 - MPMX20_04049 0.13 -1.8
4,247,558 + MPMX20_04049 0.22 +7.3
4,247,573 - MPMX20_04049 0.23 +0.1
4,247,639 - MPMX20_04049 0.26 -0.6
4,247,655 + MPMX20_04049 0.27 -2.5
4,247,663 - MPMX20_04049 0.28 +1.1
4,247,716 + MPMX20_04049 0.31 -2.6
4,247,755 + MPMX20_04049 0.33 -2.6
4,247,836 + MPMX20_04049 0.37 +0.8
4,247,837 + MPMX20_04049 0.37 -1.2
4,247,844 - MPMX20_04049 0.37 -2.0
4,247,844 - MPMX20_04049 0.37 -2.2
4,247,851 - MPMX20_04049 0.38 -0.9
4,247,859 - MPMX20_04049 0.38 -0.3
4,247,862 + MPMX20_04049 0.38 +0.3
4,247,862 + MPMX20_04049 0.38 -1.9
4,247,880 - MPMX20_04049 0.39 -1.1
4,247,880 - MPMX20_04049 0.39 +2.7
4,248,003 - MPMX20_04049 0.46 -0.7
4,248,003 - MPMX20_04049 0.46 -1.4
4,248,005 + MPMX20_04049 0.46 -0.2
4,248,013 - MPMX20_04049 0.46 -1.6
4,248,027 + MPMX20_04049 0.47 +1.4
4,248,043 + MPMX20_04049 0.48 -0.2
4,248,045 - MPMX20_04049 0.48 +0.6
4,248,049 + MPMX20_04049 0.48 +1.4
4,248,108 + MPMX20_04049 0.51 -2.9
4,248,108 + MPMX20_04049 0.51 +1.4
4,248,108 + MPMX20_04049 0.51 +0.1
4,248,116 - MPMX20_04049 0.52 +0.6

Or see this region's nucleotide sequence