Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03429

Experiment: TSB plate, 1:1 coculture with Enterobacter_ludwigii_PH2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03427 and MPMX20_03428 overlap by 113 nucleotidesMPMX20_03428 and MPMX20_03429 are separated by 24 nucleotidesMPMX20_03429 and MPMX20_03430 are separated by 3 nucleotides MPMX20_03427: MPMX20_03427 - Membrane-bound lytic murein transglycosylase F, at 3,616,150 to 3,617,700 _03427 MPMX20_03428: MPMX20_03428 - tRNA-specific adenosine deaminase, at 3,617,588 to 3,618,127 _03428 MPMX20_03429: MPMX20_03429 - Phosphatidylglycerophosphatase C, at 3,618,152 to 3,618,787 _03429 MPMX20_03430: MPMX20_03430 - PTS system EIIBC component, at 3,618,791 to 3,620,152 _03430 Position (kb) 3618 3619Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3617.168 kb on + strand, within MPMX20_03427at 3617.168 kb on + strand, within MPMX20_03427at 3617.168 kb on + strand, within MPMX20_03427at 3617.176 kb on - strand, within MPMX20_03427at 3617.197 kb on + strand, within MPMX20_03427at 3617.229 kb on - strand, within MPMX20_03427at 3617.285 kb on - strand, within MPMX20_03427at 3617.329 kb on - strand, within MPMX20_03427at 3617.378 kb on + strand, within MPMX20_03427at 3617.403 kb on - strand, within MPMX20_03427at 3617.438 kb on + strand, within MPMX20_03427at 3617.458 kb on + strand, within MPMX20_03427at 3617.458 kb on + strand, within MPMX20_03427at 3617.460 kb on - strand, within MPMX20_03427at 3617.466 kb on - strand, within MPMX20_03427at 3617.466 kb on - strand, within MPMX20_03427at 3617.559 kb on + strandat 3617.562 kb on - strandat 3617.567 kb on - strandat 3618.092 kb on - strandat 3618.124 kb on + strandat 3618.124 kb on + strandat 3618.126 kb on + strandat 3618.132 kb on - strandat 3618.132 kb on - strandat 3618.132 kb on - strandat 3618.132 kb on - strandat 3618.144 kb on + strandat 3618.163 kb on + strandat 3618.247 kb on - strand, within MPMX20_03429at 3618.320 kb on + strand, within MPMX20_03429at 3618.328 kb on - strand, within MPMX20_03429at 3618.366 kb on + strand, within MPMX20_03429at 3618.396 kb on + strand, within MPMX20_03429at 3618.404 kb on - strand, within MPMX20_03429at 3618.404 kb on - strand, within MPMX20_03429at 3618.451 kb on - strand, within MPMX20_03429at 3618.554 kb on - strand, within MPMX20_03429at 3618.555 kb on - strand, within MPMX20_03429at 3618.692 kb on + strand, within MPMX20_03429at 3618.720 kb on + strand, within MPMX20_03429at 3618.788 kb on + strandat 3618.791 kb on - strandat 3618.796 kb on + strandat 3618.796 kb on + strandat 3618.868 kb on - strandat 3618.872 kb on + strandat 3618.880 kb on - strandat 3618.880 kb on - strandat 3618.880 kb on - strandat 3618.959 kb on + strand, within MPMX20_03430at 3618.967 kb on - strand, within MPMX20_03430at 3618.972 kb on - strand, within MPMX20_03430at 3618.988 kb on + strand, within MPMX20_03430at 3619.077 kb on - strand, within MPMX20_03430at 3619.085 kb on - strand, within MPMX20_03430at 3619.142 kb on - strand, within MPMX20_03430at 3619.144 kb on + strand, within MPMX20_03430at 3619.144 kb on + strand, within MPMX20_03430at 3619.263 kb on - strand, within MPMX20_03430at 3619.320 kb on - strand, within MPMX20_03430at 3619.339 kb on - strand, within MPMX20_03430at 3619.415 kb on - strand, within MPMX20_03430at 3619.428 kb on - strand, within MPMX20_03430at 3619.441 kb on - strand, within MPMX20_03430at 3619.443 kb on - strand, within MPMX20_03430at 3619.515 kb on + strand, within MPMX20_03430at 3619.515 kb on + strand, within MPMX20_03430at 3619.523 kb on - strand, within MPMX20_03430at 3619.535 kb on - strand, within MPMX20_03430at 3619.544 kb on - strand, within MPMX20_03430at 3619.552 kb on + strand, within MPMX20_03430at 3619.620 kb on + strand, within MPMX20_03430at 3619.620 kb on + strand, within MPMX20_03430at 3619.620 kb on + strand, within MPMX20_03430at 3619.628 kb on - strand, within MPMX20_03430at 3619.629 kb on - strand, within MPMX20_03430at 3619.765 kb on - strand, within MPMX20_03430at 3619.765 kb on - strand, within MPMX20_03430at 3619.765 kb on - strand, within MPMX20_03430

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Enterobacter_ludwigii_PH2
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3,617,168 + MPMX20_03427 0.66 -2.6
3,617,168 + MPMX20_03427 0.66 +1.0
3,617,168 + MPMX20_03427 0.66 -0.9
3,617,176 - MPMX20_03427 0.66 -1.7
3,617,197 + MPMX20_03427 0.68 +1.1
3,617,229 - MPMX20_03427 0.70 -2.2
3,617,285 - MPMX20_03427 0.73 -0.9
3,617,329 - MPMX20_03427 0.76 -1.1
3,617,378 + MPMX20_03427 0.79 +1.2
3,617,403 - MPMX20_03427 0.81 -1.0
3,617,438 + MPMX20_03427 0.83 +1.6
3,617,458 + MPMX20_03427 0.84 +1.7
3,617,458 + MPMX20_03427 0.84 -1.6
3,617,460 - MPMX20_03427 0.84 -1.7
3,617,466 - MPMX20_03427 0.85 -1.6
3,617,466 - MPMX20_03427 0.85 +1.0
3,617,559 + -2.3
3,617,562 - -1.5
3,617,567 - -0.0
3,618,092 - +0.1
3,618,124 + +1.2
3,618,124 + +0.1
3,618,126 + +0.0
3,618,132 - -0.7
3,618,132 - +1.4
3,618,132 - +0.8
3,618,132 - -0.2
3,618,144 + -0.7
3,618,163 + +2.7
3,618,247 - MPMX20_03429 0.15 -2.2
3,618,320 + MPMX20_03429 0.26 +2.0
3,618,328 - MPMX20_03429 0.28 -1.7
3,618,366 + MPMX20_03429 0.34 -2.9
3,618,396 + MPMX20_03429 0.38 -2.0
3,618,404 - MPMX20_03429 0.40 +0.4
3,618,404 - MPMX20_03429 0.40 -1.7
3,618,451 - MPMX20_03429 0.47 -2.8
3,618,554 - MPMX20_03429 0.63 +1.7
3,618,555 - MPMX20_03429 0.63 +0.4
3,618,692 + MPMX20_03429 0.85 -1.4
3,618,720 + MPMX20_03429 0.89 -1.4
3,618,788 + +1.0
3,618,791 - -1.6
3,618,796 + -2.1
3,618,796 + +0.6
3,618,868 - +2.0
3,618,872 + -1.5
3,618,880 - -0.6
3,618,880 - +0.4
3,618,880 - -1.2
3,618,959 + MPMX20_03430 0.12 +1.3
3,618,967 - MPMX20_03430 0.13 -2.0
3,618,972 - MPMX20_03430 0.13 -1.5
3,618,988 + MPMX20_03430 0.14 -1.0
3,619,077 - MPMX20_03430 0.21 +1.3
3,619,085 - MPMX20_03430 0.22 -1.5
3,619,142 - MPMX20_03430 0.26 +0.2
3,619,144 + MPMX20_03430 0.26 -2.0
3,619,144 + MPMX20_03430 0.26 -1.9
3,619,263 - MPMX20_03430 0.35 -0.3
3,619,320 - MPMX20_03430 0.39 +0.6
3,619,339 - MPMX20_03430 0.40 -0.7
3,619,415 - MPMX20_03430 0.46 -1.3
3,619,428 - MPMX20_03430 0.47 +0.8
3,619,441 - MPMX20_03430 0.48 -0.7
3,619,443 - MPMX20_03430 0.48 +2.9
3,619,515 + MPMX20_03430 0.53 -0.3
3,619,515 + MPMX20_03430 0.53 -2.2
3,619,523 - MPMX20_03430 0.54 +2.0
3,619,535 - MPMX20_03430 0.55 -1.5
3,619,544 - MPMX20_03430 0.55 -2.6
3,619,552 + MPMX20_03430 0.56 +0.4
3,619,620 + MPMX20_03430 0.61 -2.7
3,619,620 + MPMX20_03430 0.61 -1.3
3,619,620 + MPMX20_03430 0.61 -2.4
3,619,628 - MPMX20_03430 0.61 +0.1
3,619,629 - MPMX20_03430 0.62 -0.0
3,619,765 - MPMX20_03430 0.72 -3.1
3,619,765 - MPMX20_03430 0.72 +0.5
3,619,765 - MPMX20_03430 0.72 +0.2

Or see this region's nucleotide sequence