Experiment: TSB plate, 1:1 coculture with Enterobacter_ludwigii_PH2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03427 and MPMX20_03428 overlap by 113 nucleotides MPMX20_03428 and MPMX20_03429 are separated by 24 nucleotides MPMX20_03429 and MPMX20_03430 are separated by 3 nucleotides
MPMX20_03427: MPMX20_03427 - Membrane-bound lytic murein transglycosylase F, at 3,616,150 to 3,617,700
_03427
MPMX20_03428: MPMX20_03428 - tRNA-specific adenosine deaminase, at 3,617,588 to 3,618,127
_03428
MPMX20_03429: MPMX20_03429 - Phosphatidylglycerophosphatase C, at 3,618,152 to 3,618,787
_03429
MPMX20_03430: MPMX20_03430 - PTS system EIIBC component, at 3,618,791 to 3,620,152
_03430
Position (kb)
3618
3619 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3617.168 kb on + strand, within MPMX20_03427 at 3617.168 kb on + strand, within MPMX20_03427 at 3617.168 kb on + strand, within MPMX20_03427 at 3617.176 kb on - strand, within MPMX20_03427 at 3617.197 kb on + strand, within MPMX20_03427 at 3617.229 kb on - strand, within MPMX20_03427 at 3617.285 kb on - strand, within MPMX20_03427 at 3617.329 kb on - strand, within MPMX20_03427 at 3617.378 kb on + strand, within MPMX20_03427 at 3617.403 kb on - strand, within MPMX20_03427 at 3617.438 kb on + strand, within MPMX20_03427 at 3617.458 kb on + strand, within MPMX20_03427 at 3617.458 kb on + strand, within MPMX20_03427 at 3617.460 kb on - strand, within MPMX20_03427 at 3617.466 kb on - strand, within MPMX20_03427 at 3617.466 kb on - strand, within MPMX20_03427 at 3617.559 kb on + strand at 3617.562 kb on - strand at 3617.567 kb on - strand at 3618.092 kb on - strand at 3618.124 kb on + strand at 3618.124 kb on + strand at 3618.126 kb on + strand at 3618.132 kb on - strand at 3618.132 kb on - strand at 3618.132 kb on - strand at 3618.132 kb on - strand at 3618.144 kb on + strand at 3618.163 kb on + strand at 3618.247 kb on - strand, within MPMX20_03429 at 3618.320 kb on + strand, within MPMX20_03429 at 3618.328 kb on - strand, within MPMX20_03429 at 3618.366 kb on + strand, within MPMX20_03429 at 3618.396 kb on + strand, within MPMX20_03429 at 3618.404 kb on - strand, within MPMX20_03429 at 3618.404 kb on - strand, within MPMX20_03429 at 3618.451 kb on - strand, within MPMX20_03429 at 3618.554 kb on - strand, within MPMX20_03429 at 3618.555 kb on - strand, within MPMX20_03429 at 3618.692 kb on + strand, within MPMX20_03429 at 3618.720 kb on + strand, within MPMX20_03429 at 3618.788 kb on + strand at 3618.791 kb on - strand at 3618.796 kb on + strand at 3618.796 kb on + strand at 3618.868 kb on - strand at 3618.872 kb on + strand at 3618.880 kb on - strand at 3618.880 kb on - strand at 3618.880 kb on - strand at 3618.959 kb on + strand, within MPMX20_03430 at 3618.967 kb on - strand, within MPMX20_03430 at 3618.972 kb on - strand, within MPMX20_03430 at 3618.988 kb on + strand, within MPMX20_03430 at 3619.077 kb on - strand, within MPMX20_03430 at 3619.085 kb on - strand, within MPMX20_03430 at 3619.142 kb on - strand, within MPMX20_03430 at 3619.144 kb on + strand, within MPMX20_03430 at 3619.144 kb on + strand, within MPMX20_03430 at 3619.263 kb on - strand, within MPMX20_03430 at 3619.320 kb on - strand, within MPMX20_03430 at 3619.339 kb on - strand, within MPMX20_03430 at 3619.415 kb on - strand, within MPMX20_03430 at 3619.428 kb on - strand, within MPMX20_03430 at 3619.441 kb on - strand, within MPMX20_03430 at 3619.443 kb on - strand, within MPMX20_03430 at 3619.515 kb on + strand, within MPMX20_03430 at 3619.515 kb on + strand, within MPMX20_03430 at 3619.523 kb on - strand, within MPMX20_03430 at 3619.535 kb on - strand, within MPMX20_03430 at 3619.544 kb on - strand, within MPMX20_03430 at 3619.552 kb on + strand, within MPMX20_03430 at 3619.620 kb on + strand, within MPMX20_03430 at 3619.620 kb on + strand, within MPMX20_03430 at 3619.620 kb on + strand, within MPMX20_03430 at 3619.628 kb on - strand, within MPMX20_03430 at 3619.629 kb on - strand, within MPMX20_03430 at 3619.765 kb on - strand, within MPMX20_03430 at 3619.765 kb on - strand, within MPMX20_03430 at 3619.765 kb on - strand, within MPMX20_03430
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Enterobacter_ludwigii_PH2 remove 3,617,168 + MPMX20_03427 0.66 -2.6 3,617,168 + MPMX20_03427 0.66 +1.0 3,617,168 + MPMX20_03427 0.66 -0.9 3,617,176 - MPMX20_03427 0.66 -1.7 3,617,197 + MPMX20_03427 0.68 +1.1 3,617,229 - MPMX20_03427 0.70 -2.2 3,617,285 - MPMX20_03427 0.73 -0.9 3,617,329 - MPMX20_03427 0.76 -1.1 3,617,378 + MPMX20_03427 0.79 +1.2 3,617,403 - MPMX20_03427 0.81 -1.0 3,617,438 + MPMX20_03427 0.83 +1.6 3,617,458 + MPMX20_03427 0.84 +1.7 3,617,458 + MPMX20_03427 0.84 -1.6 3,617,460 - MPMX20_03427 0.84 -1.7 3,617,466 - MPMX20_03427 0.85 -1.6 3,617,466 - MPMX20_03427 0.85 +1.0 3,617,559 + -2.3 3,617,562 - -1.5 3,617,567 - -0.0 3,618,092 - +0.1 3,618,124 + +1.2 3,618,124 + +0.1 3,618,126 + +0.0 3,618,132 - -0.7 3,618,132 - +1.4 3,618,132 - +0.8 3,618,132 - -0.2 3,618,144 + -0.7 3,618,163 + +2.7 3,618,247 - MPMX20_03429 0.15 -2.2 3,618,320 + MPMX20_03429 0.26 +2.0 3,618,328 - MPMX20_03429 0.28 -1.7 3,618,366 + MPMX20_03429 0.34 -2.9 3,618,396 + MPMX20_03429 0.38 -2.0 3,618,404 - MPMX20_03429 0.40 +0.4 3,618,404 - MPMX20_03429 0.40 -1.7 3,618,451 - MPMX20_03429 0.47 -2.8 3,618,554 - MPMX20_03429 0.63 +1.7 3,618,555 - MPMX20_03429 0.63 +0.4 3,618,692 + MPMX20_03429 0.85 -1.4 3,618,720 + MPMX20_03429 0.89 -1.4 3,618,788 + +1.0 3,618,791 - -1.6 3,618,796 + -2.1 3,618,796 + +0.6 3,618,868 - +2.0 3,618,872 + -1.5 3,618,880 - -0.6 3,618,880 - +0.4 3,618,880 - -1.2 3,618,959 + MPMX20_03430 0.12 +1.3 3,618,967 - MPMX20_03430 0.13 -2.0 3,618,972 - MPMX20_03430 0.13 -1.5 3,618,988 + MPMX20_03430 0.14 -1.0 3,619,077 - MPMX20_03430 0.21 +1.3 3,619,085 - MPMX20_03430 0.22 -1.5 3,619,142 - MPMX20_03430 0.26 +0.2 3,619,144 + MPMX20_03430 0.26 -2.0 3,619,144 + MPMX20_03430 0.26 -1.9 3,619,263 - MPMX20_03430 0.35 -0.3 3,619,320 - MPMX20_03430 0.39 +0.6 3,619,339 - MPMX20_03430 0.40 -0.7 3,619,415 - MPMX20_03430 0.46 -1.3 3,619,428 - MPMX20_03430 0.47 +0.8 3,619,441 - MPMX20_03430 0.48 -0.7 3,619,443 - MPMX20_03430 0.48 +2.9 3,619,515 + MPMX20_03430 0.53 -0.3 3,619,515 + MPMX20_03430 0.53 -2.2 3,619,523 - MPMX20_03430 0.54 +2.0 3,619,535 - MPMX20_03430 0.55 -1.5 3,619,544 - MPMX20_03430 0.55 -2.6 3,619,552 + MPMX20_03430 0.56 +0.4 3,619,620 + MPMX20_03430 0.61 -2.7 3,619,620 + MPMX20_03430 0.61 -1.3 3,619,620 + MPMX20_03430 0.61 -2.4 3,619,628 - MPMX20_03430 0.61 +0.1 3,619,629 - MPMX20_03430 0.62 -0.0 3,619,765 - MPMX20_03430 0.72 -3.1 3,619,765 - MPMX20_03430 0.72 +0.5 3,619,765 - MPMX20_03430 0.72 +0.2
Or see this region's nucleotide sequence