Experiment: TSB plate, 1:1 coculture with Enterobacter_ludwigii_PH2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03197 and MPMX20_03198 overlap by 1 nucleotides MPMX20_03198 and MPMX20_03199 overlap by 4 nucleotides MPMX20_03199 and MPMX20_03200 overlap by 4 nucleotides
MPMX20_03197: MPMX20_03197 - o-succinylbenzoate synthase, at 3,366,370 to 3,367,335
_03197
MPMX20_03198: MPMX20_03198 - 1,4-dihydroxy-2-naphthoyl-CoA synthase, at 3,367,335 to 3,368,192
_03198
MPMX20_03199: MPMX20_03199 - 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase, at 3,368,189 to 3,368,965
_03199
MPMX20_03200: MPMX20_03200 - 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase, at 3,368,962 to 3,370,632
_03200
Position (kb)
3368
3369 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4
5
6
7
8 at 3367.234 kb on - strand, within MPMX20_03197 at 3367.289 kb on - strand at 3367.320 kb on + strand at 3367.321 kb on - strand at 3367.435 kb on - strand, within MPMX20_03198 at 3367.519 kb on - strand, within MPMX20_03198 at 3367.593 kb on - strand, within MPMX20_03198 at 3367.595 kb on - strand, within MPMX20_03198 at 3367.605 kb on - strand, within MPMX20_03198 at 3367.621 kb on + strand, within MPMX20_03198 at 3367.626 kb on - strand, within MPMX20_03198 at 3367.702 kb on + strand, within MPMX20_03198 at 3367.756 kb on + strand, within MPMX20_03198 at 3367.774 kb on - strand, within MPMX20_03198 at 3367.832 kb on + strand, within MPMX20_03198 at 3367.894 kb on - strand, within MPMX20_03198 at 3367.916 kb on - strand, within MPMX20_03198 at 3368.038 kb on - strand, within MPMX20_03198 at 3368.132 kb on - strand at 3368.172 kb on + strand at 3368.172 kb on + strand at 3368.174 kb on - strand at 3368.182 kb on + strand at 3368.182 kb on + strand at 3368.190 kb on - strand at 3368.190 kb on - strand at 3368.277 kb on + strand, within MPMX20_03199 at 3368.308 kb on + strand, within MPMX20_03199 at 3368.322 kb on + strand, within MPMX20_03199 at 3368.322 kb on + strand, within MPMX20_03199 at 3368.456 kb on - strand, within MPMX20_03199 at 3368.479 kb on - strand, within MPMX20_03199 at 3368.586 kb on + strand, within MPMX20_03199 at 3368.586 kb on + strand, within MPMX20_03199 at 3368.594 kb on - strand, within MPMX20_03199 at 3368.662 kb on - strand, within MPMX20_03199 at 3368.794 kb on + strand, within MPMX20_03199 at 3368.833 kb on + strand, within MPMX20_03199 at 3368.835 kb on - strand, within MPMX20_03199 at 3368.857 kb on + strand, within MPMX20_03199 at 3368.929 kb on - strand at 3368.960 kb on + strand at 3369.073 kb on - strand at 3369.129 kb on - strand, within MPMX20_03200 at 3369.179 kb on + strand, within MPMX20_03200 at 3369.297 kb on + strand, within MPMX20_03200 at 3369.323 kb on + strand, within MPMX20_03200 at 3369.418 kb on - strand, within MPMX20_03200 at 3369.419 kb on + strand, within MPMX20_03200 at 3369.560 kb on + strand, within MPMX20_03200 at 3369.560 kb on + strand, within MPMX20_03200 at 3369.560 kb on + strand, within MPMX20_03200 at 3369.560 kb on + strand, within MPMX20_03200 at 3369.560 kb on + strand, within MPMX20_03200 at 3369.596 kb on + strand, within MPMX20_03200 at 3369.601 kb on + strand, within MPMX20_03200 at 3369.603 kb on - strand, within MPMX20_03200 at 3369.604 kb on - strand, within MPMX20_03200 at 3369.604 kb on - strand, within MPMX20_03200 at 3369.604 kb on - strand, within MPMX20_03200 at 3369.627 kb on + strand, within MPMX20_03200 at 3369.703 kb on - strand, within MPMX20_03200 at 3369.710 kb on + strand, within MPMX20_03200 at 3369.710 kb on + strand, within MPMX20_03200 at 3369.723 kb on - strand, within MPMX20_03200 at 3369.742 kb on + strand, within MPMX20_03200 at 3369.768 kb on + strand, within MPMX20_03200 at 3369.768 kb on + strand, within MPMX20_03200 at 3369.768 kb on + strand, within MPMX20_03200 at 3369.768 kb on + strand, within MPMX20_03200 at 3369.768 kb on + strand, within MPMX20_03200 at 3369.768 kb on + strand, within MPMX20_03200 at 3369.768 kb on + strand, within MPMX20_03200 at 3369.768 kb on + strand, within MPMX20_03200 at 3369.771 kb on - strand, within MPMX20_03200 at 3369.773 kb on + strand, within MPMX20_03200 at 3369.776 kb on - strand, within MPMX20_03200 at 3369.776 kb on - strand, within MPMX20_03200 at 3369.776 kb on - strand, within MPMX20_03200 at 3369.776 kb on - strand, within MPMX20_03200 at 3369.776 kb on - strand, within MPMX20_03200 at 3369.776 kb on - strand, within MPMX20_03200 at 3369.776 kb on - strand, within MPMX20_03200 at 3369.776 kb on - strand, within MPMX20_03200 at 3369.776 kb on - strand, within MPMX20_03200 at 3369.853 kb on - strand, within MPMX20_03200 at 3369.853 kb on - strand, within MPMX20_03200 at 3369.941 kb on + strand, within MPMX20_03200 at 3369.944 kb on + strand, within MPMX20_03200 at 3369.949 kb on - strand, within MPMX20_03200 at 3369.949 kb on - strand, within MPMX20_03200 at 3369.949 kb on - strand, within MPMX20_03200
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Enterobacter_ludwigii_PH2 remove 3,367,234 - MPMX20_03197 0.89 +3.4 3,367,289 - +0.4 3,367,320 + -1.1 3,367,321 - -1.6 3,367,435 - MPMX20_03198 0.12 +1.2 3,367,519 - MPMX20_03198 0.21 +1.0 3,367,593 - MPMX20_03198 0.30 -3.4 3,367,595 - MPMX20_03198 0.30 +1.0 3,367,605 - MPMX20_03198 0.31 -1.5 3,367,621 + MPMX20_03198 0.33 +0.1 3,367,626 - MPMX20_03198 0.34 -1.7 3,367,702 + MPMX20_03198 0.43 -0.6 3,367,756 + MPMX20_03198 0.49 -1.8 3,367,774 - MPMX20_03198 0.51 -1.4 3,367,832 + MPMX20_03198 0.58 -1.3 3,367,894 - MPMX20_03198 0.65 -1.0 3,367,916 - MPMX20_03198 0.68 -0.5 3,368,038 - MPMX20_03198 0.82 +1.0 3,368,132 - -2.3 3,368,172 + +0.7 3,368,172 + -2.2 3,368,174 - +0.4 3,368,182 + -1.4 3,368,182 + -1.1 3,368,190 - +1.7 3,368,190 - -1.5 3,368,277 + MPMX20_03199 0.11 +0.1 3,368,308 + MPMX20_03199 0.15 +0.4 3,368,322 + MPMX20_03199 0.17 -1.5 3,368,322 + MPMX20_03199 0.17 +1.5 3,368,456 - MPMX20_03199 0.34 +1.4 3,368,479 - MPMX20_03199 0.37 +0.7 3,368,586 + MPMX20_03199 0.51 -0.7 3,368,586 + MPMX20_03199 0.51 -0.0 3,368,594 - MPMX20_03199 0.52 +1.2 3,368,662 - MPMX20_03199 0.61 -2.4 3,368,794 + MPMX20_03199 0.78 -0.4 3,368,833 + MPMX20_03199 0.83 +2.0 3,368,835 - MPMX20_03199 0.83 -1.8 3,368,857 + MPMX20_03199 0.86 -0.2 3,368,929 - -0.1 3,368,960 + -0.8 3,369,073 - -2.4 3,369,129 - MPMX20_03200 0.10 -1.5 3,369,179 + MPMX20_03200 0.13 +0.3 3,369,297 + MPMX20_03200 0.20 -0.8 3,369,323 + MPMX20_03200 0.22 +0.7 3,369,418 - MPMX20_03200 0.27 +0.5 3,369,419 + MPMX20_03200 0.27 -2.0 3,369,560 + MPMX20_03200 0.36 -0.1 3,369,560 + MPMX20_03200 0.36 -2.3 3,369,560 + MPMX20_03200 0.36 +0.5 3,369,560 + MPMX20_03200 0.36 +1.5 3,369,560 + MPMX20_03200 0.36 +0.4 3,369,596 + MPMX20_03200 0.38 -0.6 3,369,601 + MPMX20_03200 0.38 -0.4 3,369,603 - MPMX20_03200 0.38 -1.9 3,369,604 - MPMX20_03200 0.38 -1.9 3,369,604 - MPMX20_03200 0.38 -0.0 3,369,604 - MPMX20_03200 0.38 +1.1 3,369,627 + MPMX20_03200 0.40 -2.0 3,369,703 - MPMX20_03200 0.44 +0.2 3,369,710 + MPMX20_03200 0.45 +3.1 3,369,710 + MPMX20_03200 0.45 -0.1 3,369,723 - MPMX20_03200 0.46 +8.3 3,369,742 + MPMX20_03200 0.47 +1.7 3,369,768 + MPMX20_03200 0.48 -0.6 3,369,768 + MPMX20_03200 0.48 +2.2 3,369,768 + MPMX20_03200 0.48 +2.6 3,369,768 + MPMX20_03200 0.48 -0.6 3,369,768 + MPMX20_03200 0.48 -0.1 3,369,768 + MPMX20_03200 0.48 +0.5 3,369,768 + MPMX20_03200 0.48 -0.7 3,369,768 + MPMX20_03200 0.48 -1.2 3,369,771 - MPMX20_03200 0.48 +0.1 3,369,773 + MPMX20_03200 0.49 -0.8 3,369,776 - MPMX20_03200 0.49 -1.2 3,369,776 - MPMX20_03200 0.49 -3.2 3,369,776 - MPMX20_03200 0.49 -3.8 3,369,776 - MPMX20_03200 0.49 -0.0 3,369,776 - MPMX20_03200 0.49 +0.7 3,369,776 - MPMX20_03200 0.49 -0.2 3,369,776 - MPMX20_03200 0.49 +1.8 3,369,776 - MPMX20_03200 0.49 +0.3 3,369,776 - MPMX20_03200 0.49 +1.8 3,369,853 - MPMX20_03200 0.53 +2.7 3,369,853 - MPMX20_03200 0.53 -0.3 3,369,941 + MPMX20_03200 0.59 -0.9 3,369,944 + MPMX20_03200 0.59 +1.6 3,369,949 - MPMX20_03200 0.59 -0.5 3,369,949 - MPMX20_03200 0.59 -0.1 3,369,949 - MPMX20_03200 0.59 -0.3
Or see this region's nucleotide sequence