Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03199

Experiment: TSB plate, 1:1 coculture with Enterobacter_ludwigii_PH2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03197 and MPMX20_03198 overlap by 1 nucleotidesMPMX20_03198 and MPMX20_03199 overlap by 4 nucleotidesMPMX20_03199 and MPMX20_03200 overlap by 4 nucleotides MPMX20_03197: MPMX20_03197 - o-succinylbenzoate synthase, at 3,366,370 to 3,367,335 _03197 MPMX20_03198: MPMX20_03198 - 1,4-dihydroxy-2-naphthoyl-CoA synthase, at 3,367,335 to 3,368,192 _03198 MPMX20_03199: MPMX20_03199 - 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase, at 3,368,189 to 3,368,965 _03199 MPMX20_03200: MPMX20_03200 - 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase, at 3,368,962 to 3,370,632 _03200 Position (kb) 3368 3369Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6 7 8at 3367.234 kb on - strand, within MPMX20_03197at 3367.289 kb on - strandat 3367.320 kb on + strandat 3367.321 kb on - strandat 3367.435 kb on - strand, within MPMX20_03198at 3367.519 kb on - strand, within MPMX20_03198at 3367.593 kb on - strand, within MPMX20_03198at 3367.595 kb on - strand, within MPMX20_03198at 3367.605 kb on - strand, within MPMX20_03198at 3367.621 kb on + strand, within MPMX20_03198at 3367.626 kb on - strand, within MPMX20_03198at 3367.702 kb on + strand, within MPMX20_03198at 3367.756 kb on + strand, within MPMX20_03198at 3367.774 kb on - strand, within MPMX20_03198at 3367.832 kb on + strand, within MPMX20_03198at 3367.894 kb on - strand, within MPMX20_03198at 3367.916 kb on - strand, within MPMX20_03198at 3368.038 kb on - strand, within MPMX20_03198at 3368.132 kb on - strandat 3368.172 kb on + strandat 3368.172 kb on + strandat 3368.174 kb on - strandat 3368.182 kb on + strandat 3368.182 kb on + strandat 3368.190 kb on - strandat 3368.190 kb on - strandat 3368.277 kb on + strand, within MPMX20_03199at 3368.308 kb on + strand, within MPMX20_03199at 3368.322 kb on + strand, within MPMX20_03199at 3368.322 kb on + strand, within MPMX20_03199at 3368.456 kb on - strand, within MPMX20_03199at 3368.479 kb on - strand, within MPMX20_03199at 3368.586 kb on + strand, within MPMX20_03199at 3368.586 kb on + strand, within MPMX20_03199at 3368.594 kb on - strand, within MPMX20_03199at 3368.662 kb on - strand, within MPMX20_03199at 3368.794 kb on + strand, within MPMX20_03199at 3368.833 kb on + strand, within MPMX20_03199at 3368.835 kb on - strand, within MPMX20_03199at 3368.857 kb on + strand, within MPMX20_03199at 3368.929 kb on - strandat 3368.960 kb on + strandat 3369.073 kb on - strandat 3369.129 kb on - strand, within MPMX20_03200at 3369.179 kb on + strand, within MPMX20_03200at 3369.297 kb on + strand, within MPMX20_03200at 3369.323 kb on + strand, within MPMX20_03200at 3369.418 kb on - strand, within MPMX20_03200at 3369.419 kb on + strand, within MPMX20_03200at 3369.560 kb on + strand, within MPMX20_03200at 3369.560 kb on + strand, within MPMX20_03200at 3369.560 kb on + strand, within MPMX20_03200at 3369.560 kb on + strand, within MPMX20_03200at 3369.560 kb on + strand, within MPMX20_03200at 3369.596 kb on + strand, within MPMX20_03200at 3369.601 kb on + strand, within MPMX20_03200at 3369.603 kb on - strand, within MPMX20_03200at 3369.604 kb on - strand, within MPMX20_03200at 3369.604 kb on - strand, within MPMX20_03200at 3369.604 kb on - strand, within MPMX20_03200at 3369.627 kb on + strand, within MPMX20_03200at 3369.703 kb on - strand, within MPMX20_03200at 3369.710 kb on + strand, within MPMX20_03200at 3369.710 kb on + strand, within MPMX20_03200at 3369.723 kb on - strand, within MPMX20_03200at 3369.742 kb on + strand, within MPMX20_03200at 3369.768 kb on + strand, within MPMX20_03200at 3369.768 kb on + strand, within MPMX20_03200at 3369.768 kb on + strand, within MPMX20_03200at 3369.768 kb on + strand, within MPMX20_03200at 3369.768 kb on + strand, within MPMX20_03200at 3369.768 kb on + strand, within MPMX20_03200at 3369.768 kb on + strand, within MPMX20_03200at 3369.768 kb on + strand, within MPMX20_03200at 3369.771 kb on - strand, within MPMX20_03200at 3369.773 kb on + strand, within MPMX20_03200at 3369.776 kb on - strand, within MPMX20_03200at 3369.776 kb on - strand, within MPMX20_03200at 3369.776 kb on - strand, within MPMX20_03200at 3369.776 kb on - strand, within MPMX20_03200at 3369.776 kb on - strand, within MPMX20_03200at 3369.776 kb on - strand, within MPMX20_03200at 3369.776 kb on - strand, within MPMX20_03200at 3369.776 kb on - strand, within MPMX20_03200at 3369.776 kb on - strand, within MPMX20_03200at 3369.853 kb on - strand, within MPMX20_03200at 3369.853 kb on - strand, within MPMX20_03200at 3369.941 kb on + strand, within MPMX20_03200at 3369.944 kb on + strand, within MPMX20_03200at 3369.949 kb on - strand, within MPMX20_03200at 3369.949 kb on - strand, within MPMX20_03200at 3369.949 kb on - strand, within MPMX20_03200

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Enterobacter_ludwigii_PH2
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3,367,234 - MPMX20_03197 0.89 +3.4
3,367,289 - +0.4
3,367,320 + -1.1
3,367,321 - -1.6
3,367,435 - MPMX20_03198 0.12 +1.2
3,367,519 - MPMX20_03198 0.21 +1.0
3,367,593 - MPMX20_03198 0.30 -3.4
3,367,595 - MPMX20_03198 0.30 +1.0
3,367,605 - MPMX20_03198 0.31 -1.5
3,367,621 + MPMX20_03198 0.33 +0.1
3,367,626 - MPMX20_03198 0.34 -1.7
3,367,702 + MPMX20_03198 0.43 -0.6
3,367,756 + MPMX20_03198 0.49 -1.8
3,367,774 - MPMX20_03198 0.51 -1.4
3,367,832 + MPMX20_03198 0.58 -1.3
3,367,894 - MPMX20_03198 0.65 -1.0
3,367,916 - MPMX20_03198 0.68 -0.5
3,368,038 - MPMX20_03198 0.82 +1.0
3,368,132 - -2.3
3,368,172 + +0.7
3,368,172 + -2.2
3,368,174 - +0.4
3,368,182 + -1.4
3,368,182 + -1.1
3,368,190 - +1.7
3,368,190 - -1.5
3,368,277 + MPMX20_03199 0.11 +0.1
3,368,308 + MPMX20_03199 0.15 +0.4
3,368,322 + MPMX20_03199 0.17 -1.5
3,368,322 + MPMX20_03199 0.17 +1.5
3,368,456 - MPMX20_03199 0.34 +1.4
3,368,479 - MPMX20_03199 0.37 +0.7
3,368,586 + MPMX20_03199 0.51 -0.7
3,368,586 + MPMX20_03199 0.51 -0.0
3,368,594 - MPMX20_03199 0.52 +1.2
3,368,662 - MPMX20_03199 0.61 -2.4
3,368,794 + MPMX20_03199 0.78 -0.4
3,368,833 + MPMX20_03199 0.83 +2.0
3,368,835 - MPMX20_03199 0.83 -1.8
3,368,857 + MPMX20_03199 0.86 -0.2
3,368,929 - -0.1
3,368,960 + -0.8
3,369,073 - -2.4
3,369,129 - MPMX20_03200 0.10 -1.5
3,369,179 + MPMX20_03200 0.13 +0.3
3,369,297 + MPMX20_03200 0.20 -0.8
3,369,323 + MPMX20_03200 0.22 +0.7
3,369,418 - MPMX20_03200 0.27 +0.5
3,369,419 + MPMX20_03200 0.27 -2.0
3,369,560 + MPMX20_03200 0.36 -0.1
3,369,560 + MPMX20_03200 0.36 -2.3
3,369,560 + MPMX20_03200 0.36 +0.5
3,369,560 + MPMX20_03200 0.36 +1.5
3,369,560 + MPMX20_03200 0.36 +0.4
3,369,596 + MPMX20_03200 0.38 -0.6
3,369,601 + MPMX20_03200 0.38 -0.4
3,369,603 - MPMX20_03200 0.38 -1.9
3,369,604 - MPMX20_03200 0.38 -1.9
3,369,604 - MPMX20_03200 0.38 -0.0
3,369,604 - MPMX20_03200 0.38 +1.1
3,369,627 + MPMX20_03200 0.40 -2.0
3,369,703 - MPMX20_03200 0.44 +0.2
3,369,710 + MPMX20_03200 0.45 +3.1
3,369,710 + MPMX20_03200 0.45 -0.1
3,369,723 - MPMX20_03200 0.46 +8.3
3,369,742 + MPMX20_03200 0.47 +1.7
3,369,768 + MPMX20_03200 0.48 -0.6
3,369,768 + MPMX20_03200 0.48 +2.2
3,369,768 + MPMX20_03200 0.48 +2.6
3,369,768 + MPMX20_03200 0.48 -0.6
3,369,768 + MPMX20_03200 0.48 -0.1
3,369,768 + MPMX20_03200 0.48 +0.5
3,369,768 + MPMX20_03200 0.48 -0.7
3,369,768 + MPMX20_03200 0.48 -1.2
3,369,771 - MPMX20_03200 0.48 +0.1
3,369,773 + MPMX20_03200 0.49 -0.8
3,369,776 - MPMX20_03200 0.49 -1.2
3,369,776 - MPMX20_03200 0.49 -3.2
3,369,776 - MPMX20_03200 0.49 -3.8
3,369,776 - MPMX20_03200 0.49 -0.0
3,369,776 - MPMX20_03200 0.49 +0.7
3,369,776 - MPMX20_03200 0.49 -0.2
3,369,776 - MPMX20_03200 0.49 +1.8
3,369,776 - MPMX20_03200 0.49 +0.3
3,369,776 - MPMX20_03200 0.49 +1.8
3,369,853 - MPMX20_03200 0.53 +2.7
3,369,853 - MPMX20_03200 0.53 -0.3
3,369,941 + MPMX20_03200 0.59 -0.9
3,369,944 + MPMX20_03200 0.59 +1.6
3,369,949 - MPMX20_03200 0.59 -0.5
3,369,949 - MPMX20_03200 0.59 -0.1
3,369,949 - MPMX20_03200 0.59 -0.3

Or see this region's nucleotide sequence