Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02497

Experiment: TSB plate, 1:1 coculture with Enterobacter_ludwigii_PH2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_02495 and MPMX20_02496 are separated by 6 nucleotidesMPMX20_02496 and MPMX20_02497 are separated by 148 nucleotidesMPMX20_02497 and MPMX20_02498 are separated by 197 nucleotidesMPMX20_02498 and MPMX20_02499 are separated by 44 nucleotides MPMX20_02495: MPMX20_02495 - Lipopolysaccharide assembly protein B, at 2,634,473 to 2,635,642 _02495 MPMX20_02496: MPMX20_02496 - Lipopolysaccharide assembly protein A, at 2,635,649 to 2,635,957 _02496 MPMX20_02497: MPMX20_02497 - Phosphatidylglycerophosphatase B, at 2,636,106 to 2,636,873 _02497 MPMX20_02498: MPMX20_02498 - GTP cyclohydrolase-2, at 2,637,071 to 2,637,661 _02498 MPMX20_02499: MPMX20_02499 - Aconitate hydratase A, at 2,637,706 to 2,640,381 _02499 Position (kb) 2636 2637Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2635.677 kb on - strandat 2635.695 kb on - strand, within MPMX20_02496at 2635.784 kb on - strand, within MPMX20_02496at 2635.984 kb on - strandat 2636.001 kb on - strandat 2636.001 kb on - strandat 2636.158 kb on + strandat 2636.213 kb on + strand, within MPMX20_02497at 2636.215 kb on + strand, within MPMX20_02497at 2636.301 kb on - strand, within MPMX20_02497at 2636.301 kb on - strand, within MPMX20_02497at 2636.321 kb on + strand, within MPMX20_02497at 2636.345 kb on + strand, within MPMX20_02497at 2636.353 kb on - strand, within MPMX20_02497at 2636.363 kb on - strand, within MPMX20_02497at 2636.387 kb on + strand, within MPMX20_02497at 2636.470 kb on + strand, within MPMX20_02497at 2636.601 kb on + strand, within MPMX20_02497at 2636.702 kb on - strand, within MPMX20_02497at 2636.726 kb on + strand, within MPMX20_02497at 2636.738 kb on + strand, within MPMX20_02497at 2636.746 kb on - strand, within MPMX20_02497at 2636.747 kb on + strand, within MPMX20_02497at 2636.796 kb on + strand, within MPMX20_02497at 2636.805 kb on - strandat 2636.856 kb on - strandat 2636.981 kb on - strandat 2637.733 kb on + strandat 2637.853 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Enterobacter_ludwigii_PH2
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2,635,677 - +1.9
2,635,695 - MPMX20_02496 0.15 -1.3
2,635,784 - MPMX20_02496 0.44 -0.3
2,635,984 - -2.2
2,636,001 - +0.9
2,636,001 - +0.6
2,636,158 + -0.1
2,636,213 + MPMX20_02497 0.14 -0.7
2,636,215 + MPMX20_02497 0.14 -1.1
2,636,301 - MPMX20_02497 0.25 -1.9
2,636,301 - MPMX20_02497 0.25 -1.4
2,636,321 + MPMX20_02497 0.28 -1.8
2,636,345 + MPMX20_02497 0.31 -1.9
2,636,353 - MPMX20_02497 0.32 -0.6
2,636,363 - MPMX20_02497 0.33 -0.1
2,636,387 + MPMX20_02497 0.37 -0.6
2,636,470 + MPMX20_02497 0.47 -1.6
2,636,601 + MPMX20_02497 0.64 -1.4
2,636,702 - MPMX20_02497 0.78 +1.7
2,636,726 + MPMX20_02497 0.81 +0.5
2,636,738 + MPMX20_02497 0.82 -1.5
2,636,746 - MPMX20_02497 0.83 +1.4
2,636,747 + MPMX20_02497 0.83 +1.3
2,636,796 + MPMX20_02497 0.90 -0.5
2,636,805 - +0.4
2,636,856 - -0.7
2,636,981 - -0.8
2,637,733 + +0.6
2,637,853 - -2.9

Or see this region's nucleotide sequence