Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01122

Experiment: TSB plate, 1:1 coculture with Enterobacter_ludwigii_PH2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01121 and MPMX20_01122 are separated by 215 nucleotidesMPMX20_01122 and MPMX20_01123 are separated by 102 nucleotides MPMX20_01121: MPMX20_01121 - Fe(3+) ions import ATP-binding protein FbpC, at 1,179,758 to 1,180,798 _01121 MPMX20_01122: MPMX20_01122 - Ferrichrome receptor FcuA, at 1,181,014 to 1,183,197 _01122 MPMX20_01123: MPMX20_01123 - Phenylalanine-specific permease, at 1,183,300 to 1,184,688 _01123 Position (kb) 1181 1182 1183 1184Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6at 1180.043 kb on - strand, within MPMX20_01121at 1180.055 kb on - strand, within MPMX20_01121at 1180.058 kb on + strand, within MPMX20_01121at 1180.100 kb on - strand, within MPMX20_01121at 1180.105 kb on + strand, within MPMX20_01121at 1180.149 kb on - strand, within MPMX20_01121at 1180.292 kb on - strand, within MPMX20_01121at 1180.397 kb on - strand, within MPMX20_01121at 1180.399 kb on + strand, within MPMX20_01121at 1180.407 kb on - strand, within MPMX20_01121at 1180.417 kb on + strand, within MPMX20_01121at 1180.417 kb on + strand, within MPMX20_01121at 1180.425 kb on - strand, within MPMX20_01121at 1180.486 kb on + strand, within MPMX20_01121at 1180.545 kb on + strand, within MPMX20_01121at 1180.550 kb on + strand, within MPMX20_01121at 1180.558 kb on - strand, within MPMX20_01121at 1180.558 kb on - strand, within MPMX20_01121at 1180.572 kb on + strand, within MPMX20_01121at 1180.577 kb on + strand, within MPMX20_01121at 1180.583 kb on - strand, within MPMX20_01121at 1180.659 kb on + strand, within MPMX20_01121at 1180.665 kb on + strand, within MPMX20_01121at 1180.705 kb on - strandat 1180.707 kb on + strandat 1180.707 kb on + strandat 1180.707 kb on + strandat 1180.715 kb on - strandat 1180.732 kb on + strandat 1180.740 kb on - strandat 1180.740 kb on - strandat 1180.830 kb on + strandat 1180.840 kb on + strandat 1180.899 kb on + strandat 1181.062 kb on - strandat 1181.065 kb on + strandat 1181.065 kb on + strandat 1181.073 kb on - strandat 1181.073 kb on - strandat 1181.128 kb on - strandat 1181.160 kb on + strandat 1181.160 kb on + strandat 1181.168 kb on - strandat 1181.238 kb on - strand, within MPMX20_01122at 1181.264 kb on + strand, within MPMX20_01122at 1181.266 kb on - strand, within MPMX20_01122at 1181.282 kb on - strand, within MPMX20_01122at 1181.338 kb on + strand, within MPMX20_01122at 1181.338 kb on + strand, within MPMX20_01122at 1181.346 kb on - strand, within MPMX20_01122at 1181.346 kb on - strand, within MPMX20_01122at 1181.349 kb on + strand, within MPMX20_01122at 1181.442 kb on + strand, within MPMX20_01122at 1181.499 kb on + strand, within MPMX20_01122at 1181.516 kb on + strand, within MPMX20_01122at 1181.516 kb on + strand, within MPMX20_01122at 1181.516 kb on + strand, within MPMX20_01122at 1181.516 kb on + strand, within MPMX20_01122at 1181.516 kb on + strand, within MPMX20_01122at 1181.516 kb on + strand, within MPMX20_01122at 1181.516 kb on + strand, within MPMX20_01122at 1181.516 kb on + strand, within MPMX20_01122at 1181.524 kb on - strand, within MPMX20_01122at 1181.524 kb on - strand, within MPMX20_01122at 1181.535 kb on + strand, within MPMX20_01122at 1181.543 kb on - strand, within MPMX20_01122at 1181.568 kb on - strand, within MPMX20_01122at 1181.610 kb on + strand, within MPMX20_01122at 1181.618 kb on - strand, within MPMX20_01122at 1181.621 kb on + strand, within MPMX20_01122at 1181.670 kb on + strand, within MPMX20_01122at 1181.674 kb on + strand, within MPMX20_01122at 1181.676 kb on - strand, within MPMX20_01122at 1181.728 kb on + strand, within MPMX20_01122at 1181.728 kb on + strand, within MPMX20_01122at 1181.733 kb on + strand, within MPMX20_01122at 1181.733 kb on + strand, within MPMX20_01122at 1181.736 kb on - strand, within MPMX20_01122at 1181.741 kb on - strand, within MPMX20_01122at 1181.741 kb on - strand, within MPMX20_01122at 1181.746 kb on - strand, within MPMX20_01122at 1181.804 kb on - strand, within MPMX20_01122at 1181.815 kb on + strand, within MPMX20_01122at 1181.895 kb on + strand, within MPMX20_01122at 1181.973 kb on - strand, within MPMX20_01122at 1181.973 kb on - strand, within MPMX20_01122at 1181.973 kb on - strand, within MPMX20_01122at 1181.976 kb on + strand, within MPMX20_01122at 1181.981 kb on + strand, within MPMX20_01122at 1182.006 kb on + strand, within MPMX20_01122at 1182.014 kb on - strand, within MPMX20_01122at 1182.014 kb on - strand, within MPMX20_01122at 1182.059 kb on + strand, within MPMX20_01122at 1182.166 kb on - strand, within MPMX20_01122at 1182.261 kb on - strand, within MPMX20_01122at 1182.309 kb on - strand, within MPMX20_01122at 1182.309 kb on - strand, within MPMX20_01122at 1182.344 kb on + strand, within MPMX20_01122at 1182.344 kb on + strand, within MPMX20_01122at 1182.352 kb on - strand, within MPMX20_01122at 1182.378 kb on + strand, within MPMX20_01122at 1182.398 kb on + strand, within MPMX20_01122at 1182.398 kb on + strand, within MPMX20_01122at 1182.458 kb on + strand, within MPMX20_01122at 1182.555 kb on + strand, within MPMX20_01122at 1182.565 kb on + strand, within MPMX20_01122at 1182.573 kb on - strand, within MPMX20_01122at 1182.573 kb on - strand, within MPMX20_01122at 1182.573 kb on - strand, within MPMX20_01122at 1182.584 kb on + strand, within MPMX20_01122at 1182.589 kb on + strand, within MPMX20_01122at 1182.606 kb on + strand, within MPMX20_01122at 1182.611 kb on + strand, within MPMX20_01122at 1182.673 kb on - strand, within MPMX20_01122at 1182.700 kb on + strand, within MPMX20_01122at 1182.752 kb on + strand, within MPMX20_01122at 1182.823 kb on + strand, within MPMX20_01122at 1182.848 kb on + strand, within MPMX20_01122at 1182.856 kb on - strand, within MPMX20_01122at 1182.858 kb on + strand, within MPMX20_01122at 1182.858 kb on + strand, within MPMX20_01122at 1182.895 kb on + strand, within MPMX20_01122at 1182.903 kb on - strand, within MPMX20_01122at 1182.923 kb on - strand, within MPMX20_01122at 1182.974 kb on + strand, within MPMX20_01122at 1183.013 kb on - strandat 1183.020 kb on + strandat 1183.026 kb on + strandat 1183.026 kb on + strandat 1183.026 kb on + strandat 1183.028 kb on - strandat 1183.034 kb on - strandat 1183.123 kb on - strandat 1183.142 kb on + strandat 1183.147 kb on + strandat 1183.155 kb on - strandat 1183.166 kb on + strandat 1183.174 kb on - strandat 1183.174 kb on - strandat 1183.174 kb on - strandat 1183.174 kb on - strandat 1183.174 kb on - strandat 1183.182 kb on + strandat 1183.190 kb on - strandat 1183.222 kb on + strandat 1183.225 kb on - strandat 1183.228 kb on + strandat 1183.290 kb on + strandat 1183.290 kb on + strandat 1183.298 kb on - strandat 1183.334 kb on + strandat 1183.343 kb on - strandat 1183.424 kb on + strandat 1183.447 kb on + strand, within MPMX20_01123at 1183.450 kb on - strand, within MPMX20_01123at 1183.642 kb on - strand, within MPMX20_01123at 1183.642 kb on - strand, within MPMX20_01123at 1183.658 kb on + strand, within MPMX20_01123at 1183.666 kb on - strand, within MPMX20_01123at 1183.700 kb on - strand, within MPMX20_01123at 1183.713 kb on - strand, within MPMX20_01123at 1183.722 kb on - strand, within MPMX20_01123at 1183.746 kb on + strand, within MPMX20_01123at 1183.799 kb on + strand, within MPMX20_01123at 1183.809 kb on + strand, within MPMX20_01123at 1183.817 kb on - strand, within MPMX20_01123at 1183.849 kb on - strand, within MPMX20_01123at 1183.940 kb on + strand, within MPMX20_01123at 1183.940 kb on + strand, within MPMX20_01123at 1183.982 kb on + strand, within MPMX20_01123at 1183.982 kb on + strand, within MPMX20_01123at 1184.049 kb on + strand, within MPMX20_01123at 1184.059 kb on - strand, within MPMX20_01123at 1184.066 kb on + strand, within MPMX20_01123at 1184.076 kb on + strand, within MPMX20_01123at 1184.084 kb on - strand, within MPMX20_01123at 1184.110 kb on + strand, within MPMX20_01123at 1184.120 kb on - strand, within MPMX20_01123at 1184.194 kb on + strand, within MPMX20_01123at 1184.194 kb on + strand, within MPMX20_01123

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Enterobacter_ludwigii_PH2
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1,180,043 - MPMX20_01121 0.27 -4.0
1,180,055 - MPMX20_01121 0.29 -2.0
1,180,058 + MPMX20_01121 0.29 +0.2
1,180,100 - MPMX20_01121 0.33 -0.4
1,180,105 + MPMX20_01121 0.33 -2.6
1,180,149 - MPMX20_01121 0.38 -0.6
1,180,292 - MPMX20_01121 0.51 -0.1
1,180,397 - MPMX20_01121 0.61 -2.7
1,180,399 + MPMX20_01121 0.62 -2.2
1,180,407 - MPMX20_01121 0.62 -1.7
1,180,417 + MPMX20_01121 0.63 +1.6
1,180,417 + MPMX20_01121 0.63 -2.9
1,180,425 - MPMX20_01121 0.64 +6.7
1,180,486 + MPMX20_01121 0.70 -3.2
1,180,545 + MPMX20_01121 0.76 -1.1
1,180,550 + MPMX20_01121 0.76 +1.2
1,180,558 - MPMX20_01121 0.77 +1.3
1,180,558 - MPMX20_01121 0.77 -2.5
1,180,572 + MPMX20_01121 0.78 -0.1
1,180,577 + MPMX20_01121 0.79 -1.6
1,180,583 - MPMX20_01121 0.79 -3.0
1,180,659 + MPMX20_01121 0.87 -0.9
1,180,665 + MPMX20_01121 0.87 +2.7
1,180,705 - -2.5
1,180,707 + +0.4
1,180,707 + -0.3
1,180,707 + +0.0
1,180,715 - +0.2
1,180,732 + -1.0
1,180,740 - -0.2
1,180,740 - -0.1
1,180,830 + +1.8
1,180,840 + -1.4
1,180,899 + -2.5
1,181,062 - -0.9
1,181,065 + +1.2
1,181,065 + +0.2
1,181,073 - -0.6
1,181,073 - -2.6
1,181,128 - +1.1
1,181,160 + -2.1
1,181,160 + -2.9
1,181,168 - -0.3
1,181,238 - MPMX20_01122 0.10 +0.2
1,181,264 + MPMX20_01122 0.11 -0.1
1,181,266 - MPMX20_01122 0.12 +1.1
1,181,282 - MPMX20_01122 0.12 -0.3
1,181,338 + MPMX20_01122 0.15 -0.7
1,181,338 + MPMX20_01122 0.15 -0.9
1,181,346 - MPMX20_01122 0.15 -0.3
1,181,346 - MPMX20_01122 0.15 -1.9
1,181,349 + MPMX20_01122 0.15 -2.8
1,181,442 + MPMX20_01122 0.20 -0.9
1,181,499 + MPMX20_01122 0.22 -0.8
1,181,516 + MPMX20_01122 0.23 -0.4
1,181,516 + MPMX20_01122 0.23 +0.3
1,181,516 + MPMX20_01122 0.23 -0.9
1,181,516 + MPMX20_01122 0.23 +0.7
1,181,516 + MPMX20_01122 0.23 -0.9
1,181,516 + MPMX20_01122 0.23 +1.9
1,181,516 + MPMX20_01122 0.23 +0.1
1,181,516 + MPMX20_01122 0.23 +0.2
1,181,524 - MPMX20_01122 0.23 -1.9
1,181,524 - MPMX20_01122 0.23 +0.1
1,181,535 + MPMX20_01122 0.24 +1.5
1,181,543 - MPMX20_01122 0.24 -1.6
1,181,568 - MPMX20_01122 0.25 +1.6
1,181,610 + MPMX20_01122 0.27 +0.2
1,181,618 - MPMX20_01122 0.28 +2.3
1,181,621 + MPMX20_01122 0.28 +1.1
1,181,670 + MPMX20_01122 0.30 -1.2
1,181,674 + MPMX20_01122 0.30 -1.8
1,181,676 - MPMX20_01122 0.30 -1.2
1,181,728 + MPMX20_01122 0.33 -0.2
1,181,728 + MPMX20_01122 0.33 -3.4
1,181,733 + MPMX20_01122 0.33 -1.0
1,181,733 + MPMX20_01122 0.33 -3.7
1,181,736 - MPMX20_01122 0.33 -0.4
1,181,741 - MPMX20_01122 0.33 +1.7
1,181,741 - MPMX20_01122 0.33 -0.4
1,181,746 - MPMX20_01122 0.34 -2.6
1,181,804 - MPMX20_01122 0.36 -0.8
1,181,815 + MPMX20_01122 0.37 -1.7
1,181,895 + MPMX20_01122 0.40 -2.1
1,181,973 - MPMX20_01122 0.44 +3.0
1,181,973 - MPMX20_01122 0.44 +0.9
1,181,973 - MPMX20_01122 0.44 +1.5
1,181,976 + MPMX20_01122 0.44 +0.6
1,181,981 + MPMX20_01122 0.44 +1.0
1,182,006 + MPMX20_01122 0.45 -0.6
1,182,014 - MPMX20_01122 0.46 -0.9
1,182,014 - MPMX20_01122 0.46 -2.3
1,182,059 + MPMX20_01122 0.48 +0.7
1,182,166 - MPMX20_01122 0.53 -2.2
1,182,261 - MPMX20_01122 0.57 -3.0
1,182,309 - MPMX20_01122 0.59 -3.1
1,182,309 - MPMX20_01122 0.59 +0.7
1,182,344 + MPMX20_01122 0.61 +0.6
1,182,344 + MPMX20_01122 0.61 +0.8
1,182,352 - MPMX20_01122 0.61 +0.1
1,182,378 + MPMX20_01122 0.62 -1.0
1,182,398 + MPMX20_01122 0.63 -1.6
1,182,398 + MPMX20_01122 0.63 -2.2
1,182,458 + MPMX20_01122 0.66 -0.8
1,182,555 + MPMX20_01122 0.71 +1.4
1,182,565 + MPMX20_01122 0.71 +0.8
1,182,573 - MPMX20_01122 0.71 -0.8
1,182,573 - MPMX20_01122 0.71 +0.0
1,182,573 - MPMX20_01122 0.71 -3.0
1,182,584 + MPMX20_01122 0.72 +1.1
1,182,589 + MPMX20_01122 0.72 -1.8
1,182,606 + MPMX20_01122 0.73 +0.7
1,182,611 + MPMX20_01122 0.73 -2.5
1,182,673 - MPMX20_01122 0.76 +1.1
1,182,700 + MPMX20_01122 0.77 -2.1
1,182,752 + MPMX20_01122 0.80 -2.3
1,182,823 + MPMX20_01122 0.83 +2.0
1,182,848 + MPMX20_01122 0.84 -0.5
1,182,856 - MPMX20_01122 0.84 -1.5
1,182,858 + MPMX20_01122 0.84 -0.5
1,182,858 + MPMX20_01122 0.84 -1.4
1,182,895 + MPMX20_01122 0.86 -2.0
1,182,903 - MPMX20_01122 0.86 -1.3
1,182,923 - MPMX20_01122 0.87 +0.5
1,182,974 + MPMX20_01122 0.90 -1.7
1,183,013 - -1.1
1,183,020 + -1.4
1,183,026 + -0.0
1,183,026 + +0.2
1,183,026 + -0.3
1,183,028 - -0.6
1,183,034 - +1.5
1,183,123 - -2.6
1,183,142 + +0.4
1,183,147 + +1.8
1,183,155 - +3.0
1,183,166 + -0.7
1,183,174 - +0.6
1,183,174 - -2.1
1,183,174 - -0.3
1,183,174 - -0.4
1,183,174 - -1.2
1,183,182 + -3.9
1,183,190 - -1.9
1,183,222 + +2.0
1,183,225 - -1.4
1,183,228 + +0.5
1,183,290 + -1.3
1,183,290 + -0.7
1,183,298 - +0.4
1,183,334 + +0.5
1,183,343 - -0.3
1,183,424 + +2.0
1,183,447 + MPMX20_01123 0.11 -0.4
1,183,450 - MPMX20_01123 0.11 +1.3
1,183,642 - MPMX20_01123 0.25 +0.4
1,183,642 - MPMX20_01123 0.25 -0.3
1,183,658 + MPMX20_01123 0.26 -0.4
1,183,666 - MPMX20_01123 0.26 -2.5
1,183,700 - MPMX20_01123 0.29 -0.4
1,183,713 - MPMX20_01123 0.30 +0.3
1,183,722 - MPMX20_01123 0.30 -2.5
1,183,746 + MPMX20_01123 0.32 -0.8
1,183,799 + MPMX20_01123 0.36 -0.9
1,183,809 + MPMX20_01123 0.37 +1.9
1,183,817 - MPMX20_01123 0.37 -0.8
1,183,849 - MPMX20_01123 0.40 +1.5
1,183,940 + MPMX20_01123 0.46 +0.9
1,183,940 + MPMX20_01123 0.46 +0.1
1,183,982 + MPMX20_01123 0.49 +0.1
1,183,982 + MPMX20_01123 0.49 +1.0
1,184,049 + MPMX20_01123 0.54 +0.0
1,184,059 - MPMX20_01123 0.55 +2.0
1,184,066 + MPMX20_01123 0.55 +0.6
1,184,076 + MPMX20_01123 0.56 +0.2
1,184,084 - MPMX20_01123 0.56 -1.9
1,184,110 + MPMX20_01123 0.58 -2.8
1,184,120 - MPMX20_01123 0.59 -0.1
1,184,194 + MPMX20_01123 0.64 +1.0
1,184,194 + MPMX20_01123 0.64 +1.4

Or see this region's nucleotide sequence