Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00859

Experiment: TSB plate, 1:1 coculture with Enterobacter_ludwigii_PH2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_00857 and MPMX20_00858 are separated by 186 nucleotidesMPMX20_00858 and MPMX20_00859 are separated by 12 nucleotidesMPMX20_00859 and MPMX20_00860 are separated by 11 nucleotides MPMX20_00857: MPMX20_00857 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase, at 905,093 to 906,292 _00857 MPMX20_00858: MPMX20_00858 - Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific), at 906,479 to 907,237 _00858 MPMX20_00859: MPMX20_00859 - Phosphatidate cytidylyltransferase, at 907,250 to 908,107 _00859 MPMX20_00860: MPMX20_00860 - Regulator of sigma-E protease RseP, at 908,119 to 909,471 _00860 Position (kb) 907 908 909Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 906.302 kb on + strandat 906.341 kb on + strandat 906.341 kb on + strandat 906.360 kb on + strandat 906.389 kb on + strandat 908.114 kb on + strandat 908.114 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Enterobacter_ludwigii_PH2
remove
906,302 + +0.8
906,341 + +1.4
906,341 + -1.2
906,360 + -1.9
906,389 + -4.2
908,114 + +2.0
908,114 + +0.3

Or see this region's nucleotide sequence