Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00820

Experiment: TSB plate, 1:1 coculture with Enterobacter_ludwigii_PH2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00818 and MPMX20_00819 are separated by 195 nucleotidesMPMX20_00819 and MPMX20_00820 are separated by 101 nucleotidesMPMX20_00820 and MPMX20_00821 are separated by 107 nucleotides MPMX20_00818: MPMX20_00818 - Quinoprotein glucose dehydrogenase, at 860,453 to 862,843 _00818 MPMX20_00819: MPMX20_00819 - Hypoxanthine phosphoribosyltransferase, at 863,039 to 863,587 _00819 MPMX20_00820: MPMX20_00820 - Carbonic anhydrase 2, at 863,689 to 864,351 _00820 MPMX20_00821: MPMX20_00821 - putative ABC transporter ATP-binding protein YadG, at 864,459 to 865,385 _00821 Position (kb) 863 864 865Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 862.693 kb on + strandat 862.713 kb on + strandat 862.787 kb on + strandat 862.795 kb on + strandat 862.808 kb on + strandat 862.857 kb on - strandat 862.945 kb on + strandat 862.947 kb on - strandat 862.947 kb on - strandat 862.950 kb on + strandat 862.953 kb on - strandat 862.958 kb on - strandat 862.973 kb on + strandat 862.997 kb on + strandat 863.005 kb on - strandat 863.196 kb on + strand, within MPMX20_00819at 863.196 kb on + strand, within MPMX20_00819at 863.201 kb on + strand, within MPMX20_00819at 863.204 kb on - strand, within MPMX20_00819at 863.204 kb on - strand, within MPMX20_00819at 863.204 kb on - strand, within MPMX20_00819at 863.216 kb on + strand, within MPMX20_00819at 863.219 kb on + strand, within MPMX20_00819at 863.224 kb on - strand, within MPMX20_00819at 863.260 kb on + strand, within MPMX20_00819at 863.374 kb on + strand, within MPMX20_00819at 863.432 kb on - strand, within MPMX20_00819at 863.445 kb on - strand, within MPMX20_00819at 863.488 kb on + strand, within MPMX20_00819at 863.565 kb on + strandat 863.565 kb on + strandat 863.588 kb on + strandat 863.588 kb on + strandat 863.620 kb on - strandat 863.620 kb on - strandat 863.670 kb on - strandat 863.699 kb on - strandat 863.735 kb on + strandat 863.775 kb on + strand, within MPMX20_00820at 863.775 kb on + strand, within MPMX20_00820at 863.815 kb on - strand, within MPMX20_00820at 863.824 kb on + strand, within MPMX20_00820at 863.826 kb on - strand, within MPMX20_00820at 863.901 kb on + strand, within MPMX20_00820at 863.952 kb on + strand, within MPMX20_00820at 863.964 kb on + strand, within MPMX20_00820at 863.998 kb on + strand, within MPMX20_00820at 864.006 kb on - strand, within MPMX20_00820at 864.101 kb on - strand, within MPMX20_00820at 864.194 kb on + strand, within MPMX20_00820at 864.204 kb on + strand, within MPMX20_00820at 864.236 kb on - strand, within MPMX20_00820at 864.290 kb on + strandat 864.294 kb on - strandat 864.333 kb on + strandat 864.341 kb on - strandat 864.345 kb on + strandat 864.371 kb on - strandat 864.372 kb on - strandat 864.391 kb on + strandat 864.391 kb on + strandat 864.399 kb on - strandat 864.399 kb on - strandat 864.425 kb on - strandat 864.450 kb on + strandat 864.475 kb on + strandat 864.475 kb on + strandat 864.483 kb on - strandat 864.483 kb on - strandat 864.685 kb on - strand, within MPMX20_00821at 864.721 kb on + strand, within MPMX20_00821at 864.729 kb on - strand, within MPMX20_00821at 864.739 kb on - strand, within MPMX20_00821at 864.927 kb on - strand, within MPMX20_00821at 864.942 kb on - strand, within MPMX20_00821at 864.981 kb on + strand, within MPMX20_00821at 864.981 kb on + strand, within MPMX20_00821at 864.989 kb on - strand, within MPMX20_00821at 865.042 kb on + strand, within MPMX20_00821at 865.042 kb on + strand, within MPMX20_00821at 865.050 kb on - strand, within MPMX20_00821at 865.119 kb on - strand, within MPMX20_00821at 865.280 kb on + strand, within MPMX20_00821at 865.288 kb on - strand, within MPMX20_00821at 865.302 kb on - strandat 865.348 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Enterobacter_ludwigii_PH2
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862,693 + -0.6
862,713 + +0.9
862,787 + +1.4
862,795 + -0.3
862,808 + +0.6
862,857 - -1.3
862,945 + +4.2
862,947 - -0.3
862,947 - -1.0
862,950 + -1.3
862,953 - +0.4
862,958 - +0.4
862,973 + +2.0
862,997 + -0.7
863,005 - -2.9
863,196 + MPMX20_00819 0.29 +1.0
863,196 + MPMX20_00819 0.29 -3.2
863,201 + MPMX20_00819 0.30 -0.0
863,204 - MPMX20_00819 0.30 -2.6
863,204 - MPMX20_00819 0.30 -0.9
863,204 - MPMX20_00819 0.30 +0.2
863,216 + MPMX20_00819 0.32 -1.9
863,219 + MPMX20_00819 0.33 +2.0
863,224 - MPMX20_00819 0.34 +0.5
863,260 + MPMX20_00819 0.40 -2.8
863,374 + MPMX20_00819 0.61 -0.1
863,432 - MPMX20_00819 0.72 +1.4
863,445 - MPMX20_00819 0.74 -0.2
863,488 + MPMX20_00819 0.82 +2.0
863,565 + -0.7
863,565 + -0.0
863,588 + -1.9
863,588 + -1.8
863,620 - -0.7
863,620 - -2.7
863,670 - -1.2
863,699 - +5.2
863,735 + -2.5
863,775 + MPMX20_00820 0.13 +0.6
863,775 + MPMX20_00820 0.13 -0.0
863,815 - MPMX20_00820 0.19 +2.4
863,824 + MPMX20_00820 0.20 -0.1
863,826 - MPMX20_00820 0.21 +2.8
863,901 + MPMX20_00820 0.32 -1.5
863,952 + MPMX20_00820 0.40 -1.5
863,964 + MPMX20_00820 0.41 -1.4
863,998 + MPMX20_00820 0.47 +0.1
864,006 - MPMX20_00820 0.48 +0.1
864,101 - MPMX20_00820 0.62 +1.1
864,194 + MPMX20_00820 0.76 -0.3
864,204 + MPMX20_00820 0.78 +0.4
864,236 - MPMX20_00820 0.83 -1.3
864,290 + -1.5
864,294 - +2.2
864,333 + +1.4
864,341 - +1.6
864,345 + -1.0
864,371 - +2.2
864,372 - -0.4
864,391 + -1.6
864,391 + +2.8
864,399 - -2.0
864,399 - -1.6
864,425 - +0.2
864,450 + +1.0
864,475 + -1.5
864,475 + +1.1
864,483 - -0.7
864,483 - +0.4
864,685 - MPMX20_00821 0.24 -1.1
864,721 + MPMX20_00821 0.28 +0.9
864,729 - MPMX20_00821 0.29 -2.8
864,739 - MPMX20_00821 0.30 -3.6
864,927 - MPMX20_00821 0.50 +1.5
864,942 - MPMX20_00821 0.52 -0.2
864,981 + MPMX20_00821 0.56 -0.4
864,981 + MPMX20_00821 0.56 -1.0
864,989 - MPMX20_00821 0.57 +0.1
865,042 + MPMX20_00821 0.63 -2.0
865,042 + MPMX20_00821 0.63 -1.8
865,050 - MPMX20_00821 0.64 -3.6
865,119 - MPMX20_00821 0.71 +1.1
865,280 + MPMX20_00821 0.89 +0.1
865,288 - MPMX20_00821 0.89 +4.3
865,302 - -1.1
865,348 + -3.5

Or see this region's nucleotide sequence