Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00609

Experiment: TSB plate, 1:1 coculture with Enterobacter_ludwigii_PH2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00608 and MPMX20_00609 are separated by 66 nucleotidesMPMX20_00609 and MPMX20_00610 are separated by 176 nucleotidesMPMX20_00610 and MPMX20_00611 are separated by 59 nucleotidesMPMX20_00611 and MPMX20_00612 are separated by 81 nucleotides MPMX20_00608: MPMX20_00608 - Ferrichrome outer membrane transporter/phage receptor, at 633,870 to 635,960 _00608 MPMX20_00609: MPMX20_00609 - HTH-type transcriptional regulator NorG, at 636,027 to 637,442 _00609 MPMX20_00610: MPMX20_00610 - hypothetical protein, at 637,619 to 637,780 _00610 MPMX20_00611: MPMX20_00611 - hypothetical protein, at 637,840 to 638,094 _00611 MPMX20_00612: MPMX20_00612 - HTH-type transcriptional regulatory protein GabR, at 638,176 to 639,564 _00612 Position (kb) 636 637 638Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 635.061 kb on - strand, within MPMX20_00608at 635.073 kb on + strand, within MPMX20_00608at 635.076 kb on - strand, within MPMX20_00608at 635.081 kb on - strand, within MPMX20_00608at 635.081 kb on - strand, within MPMX20_00608at 635.102 kb on + strand, within MPMX20_00608at 635.127 kb on + strand, within MPMX20_00608at 635.179 kb on + strand, within MPMX20_00608at 635.187 kb on - strand, within MPMX20_00608at 635.204 kb on + strand, within MPMX20_00608at 635.211 kb on - strand, within MPMX20_00608at 635.211 kb on - strand, within MPMX20_00608at 635.256 kb on + strand, within MPMX20_00608at 635.256 kb on + strand, within MPMX20_00608at 635.289 kb on + strand, within MPMX20_00608at 635.289 kb on + strand, within MPMX20_00608at 635.289 kb on - strand, within MPMX20_00608at 635.319 kb on - strand, within MPMX20_00608at 635.375 kb on + strand, within MPMX20_00608at 635.380 kb on - strand, within MPMX20_00608at 635.383 kb on - strand, within MPMX20_00608at 635.393 kb on + strand, within MPMX20_00608at 635.472 kb on - strand, within MPMX20_00608at 635.481 kb on + strand, within MPMX20_00608at 635.525 kb on + strand, within MPMX20_00608at 635.526 kb on - strand, within MPMX20_00608at 635.541 kb on - strand, within MPMX20_00608at 635.571 kb on + strand, within MPMX20_00608at 635.571 kb on + strand, within MPMX20_00608at 635.571 kb on + strand, within MPMX20_00608at 635.584 kb on - strand, within MPMX20_00608at 635.585 kb on - strand, within MPMX20_00608at 635.608 kb on + strand, within MPMX20_00608at 635.608 kb on + strand, within MPMX20_00608at 635.642 kb on - strand, within MPMX20_00608at 635.671 kb on + strand, within MPMX20_00608at 635.769 kb on - strandat 635.776 kb on + strandat 635.784 kb on - strandat 635.810 kb on - strandat 635.811 kb on - strandat 635.813 kb on + strandat 635.827 kb on - strandat 635.896 kb on - strandat 635.898 kb on + strandat 635.972 kb on - strandat 636.022 kb on - strandat 636.032 kb on - strandat 636.081 kb on + strandat 636.099 kb on - strandat 636.212 kb on - strand, within MPMX20_00609at 636.290 kb on + strand, within MPMX20_00609at 636.293 kb on - strand, within MPMX20_00609at 636.303 kb on + strand, within MPMX20_00609at 636.311 kb on - strand, within MPMX20_00609at 636.367 kb on - strand, within MPMX20_00609at 636.418 kb on - strand, within MPMX20_00609at 636.418 kb on - strand, within MPMX20_00609at 636.491 kb on - strand, within MPMX20_00609at 636.516 kb on + strand, within MPMX20_00609at 636.551 kb on + strand, within MPMX20_00609at 636.640 kb on - strand, within MPMX20_00609at 636.739 kb on - strand, within MPMX20_00609at 636.752 kb on - strand, within MPMX20_00609at 636.760 kb on - strand, within MPMX20_00609at 636.760 kb on - strand, within MPMX20_00609at 636.804 kb on - strand, within MPMX20_00609at 636.804 kb on - strand, within MPMX20_00609at 636.888 kb on - strand, within MPMX20_00609at 636.888 kb on - strand, within MPMX20_00609at 636.900 kb on - strand, within MPMX20_00609at 637.013 kb on + strand, within MPMX20_00609at 637.013 kb on + strand, within MPMX20_00609at 637.013 kb on + strand, within MPMX20_00609at 637.013 kb on + strand, within MPMX20_00609at 637.021 kb on - strand, within MPMX20_00609at 637.021 kb on - strand, within MPMX20_00609at 637.021 kb on - strand, within MPMX20_00609at 637.044 kb on - strand, within MPMX20_00609at 637.231 kb on + strand, within MPMX20_00609at 637.239 kb on - strand, within MPMX20_00609at 637.239 kb on - strand, within MPMX20_00609at 637.239 kb on - strand, within MPMX20_00609at 637.265 kb on + strand, within MPMX20_00609at 637.270 kb on + strand, within MPMX20_00609at 637.273 kb on - strand, within MPMX20_00609at 637.310 kb on + strandat 637.310 kb on + strandat 637.318 kb on - strandat 637.318 kb on - strandat 637.337 kb on + strandat 637.345 kb on - strandat 637.383 kb on + strandat 637.383 kb on + strandat 637.390 kb on - strandat 637.391 kb on - strandat 637.402 kb on + strandat 637.402 kb on - strandat 637.482 kb on + strandat 637.682 kb on - strand, within MPMX20_00610at 637.690 kb on - strand, within MPMX20_00610at 637.720 kb on - strand, within MPMX20_00610at 637.744 kb on + strand, within MPMX20_00610at 637.744 kb on + strand, within MPMX20_00610at 637.744 kb on + strand, within MPMX20_00610at 637.744 kb on + strand, within MPMX20_00610at 637.744 kb on + strand, within MPMX20_00610at 637.744 kb on + strand, within MPMX20_00610at 637.744 kb on + strand, within MPMX20_00610at 637.744 kb on + strand, within MPMX20_00610at 637.752 kb on - strand, within MPMX20_00610at 637.752 kb on - strand, within MPMX20_00610at 637.752 kb on - strand, within MPMX20_00610at 637.752 kb on - strand, within MPMX20_00610at 637.752 kb on - strand, within MPMX20_00610at 637.752 kb on - strand, within MPMX20_00610at 637.752 kb on - strand, within MPMX20_00610at 637.752 kb on - strand, within MPMX20_00610at 637.752 kb on - strand, within MPMX20_00610at 637.752 kb on - strand, within MPMX20_00610at 637.752 kb on - strand, within MPMX20_00610at 637.789 kb on + strandat 637.802 kb on - strandat 637.816 kb on + strandat 637.816 kb on + strandat 637.824 kb on - strandat 637.907 kb on + strand, within MPMX20_00611at 637.915 kb on - strand, within MPMX20_00611at 637.917 kb on + strand, within MPMX20_00611at 637.917 kb on + strand, within MPMX20_00611at 637.925 kb on - strand, within MPMX20_00611at 637.926 kb on + strand, within MPMX20_00611at 637.977 kb on + strand, within MPMX20_00611at 638.039 kb on + strand, within MPMX20_00611at 638.047 kb on - strand, within MPMX20_00611at 638.156 kb on - strandat 638.163 kb on - strandat 638.173 kb on + strandat 638.202 kb on + strandat 638.202 kb on + strandat 638.240 kb on - strandat 638.245 kb on - strandat 638.247 kb on + strandat 638.251 kb on + strandat 638.255 kb on - strandat 638.259 kb on - strandat 638.270 kb on - strandat 638.275 kb on + strandat 638.323 kb on - strand, within MPMX20_00612at 638.333 kb on + strand, within MPMX20_00612at 638.339 kb on - strand, within MPMX20_00612at 638.384 kb on - strand, within MPMX20_00612at 638.389 kb on - strand, within MPMX20_00612at 638.407 kb on - strand, within MPMX20_00612at 638.429 kb on + strand, within MPMX20_00612at 638.436 kb on - strand, within MPMX20_00612at 638.437 kb on - strand, within MPMX20_00612

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Enterobacter_ludwigii_PH2
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635,061 - MPMX20_00608 0.57 -1.4
635,073 + MPMX20_00608 0.58 -2.7
635,076 - MPMX20_00608 0.58 -1.7
635,081 - MPMX20_00608 0.58 +1.4
635,081 - MPMX20_00608 0.58 -2.9
635,102 + MPMX20_00608 0.59 -3.1
635,127 + MPMX20_00608 0.60 -1.4
635,179 + MPMX20_00608 0.63 -1.8
635,187 - MPMX20_00608 0.63 -2.8
635,204 + MPMX20_00608 0.64 -0.6
635,211 - MPMX20_00608 0.64 -0.1
635,211 - MPMX20_00608 0.64 -1.8
635,256 + MPMX20_00608 0.66 +0.1
635,256 + MPMX20_00608 0.66 +0.2
635,289 + MPMX20_00608 0.68 -0.4
635,289 + MPMX20_00608 0.68 -2.3
635,289 - MPMX20_00608 0.68 +0.9
635,319 - MPMX20_00608 0.69 +0.3
635,375 + MPMX20_00608 0.72 -1.8
635,380 - MPMX20_00608 0.72 -3.1
635,383 - MPMX20_00608 0.72 +0.3
635,393 + MPMX20_00608 0.73 +2.4
635,472 - MPMX20_00608 0.77 -0.1
635,481 + MPMX20_00608 0.77 +0.9
635,525 + MPMX20_00608 0.79 -2.7
635,526 - MPMX20_00608 0.79 +2.2
635,541 - MPMX20_00608 0.80 +0.9
635,571 + MPMX20_00608 0.81 -0.0
635,571 + MPMX20_00608 0.81 +0.6
635,571 + MPMX20_00608 0.81 +0.4
635,584 - MPMX20_00608 0.82 -2.3
635,585 - MPMX20_00608 0.82 -1.4
635,608 + MPMX20_00608 0.83 -3.2
635,608 + MPMX20_00608 0.83 -0.4
635,642 - MPMX20_00608 0.85 -2.2
635,671 + MPMX20_00608 0.86 +2.0
635,769 - +1.2
635,776 + -2.3
635,784 - -0.8
635,810 - -0.5
635,811 - +1.8
635,813 + -0.0
635,827 - -1.1
635,896 - -1.9
635,898 + -1.0
635,972 - +1.0
636,022 - -0.2
636,032 - -0.5
636,081 + -0.5
636,099 - +0.2
636,212 - MPMX20_00609 0.13 +2.2
636,290 + MPMX20_00609 0.19 -2.0
636,293 - MPMX20_00609 0.19 -2.8
636,303 + MPMX20_00609 0.19 -0.4
636,311 - MPMX20_00609 0.20 -2.5
636,367 - MPMX20_00609 0.24 -0.7
636,418 - MPMX20_00609 0.28 +1.5
636,418 - MPMX20_00609 0.28 -3.1
636,491 - MPMX20_00609 0.33 +0.7
636,516 + MPMX20_00609 0.35 +0.7
636,551 + MPMX20_00609 0.37 -3.3
636,640 - MPMX20_00609 0.43 -0.6
636,739 - MPMX20_00609 0.50 +1.1
636,752 - MPMX20_00609 0.51 -2.3
636,760 - MPMX20_00609 0.52 -1.3
636,760 - MPMX20_00609 0.52 +0.5
636,804 - MPMX20_00609 0.55 +1.0
636,804 - MPMX20_00609 0.55 -1.0
636,888 - MPMX20_00609 0.61 -1.1
636,888 - MPMX20_00609 0.61 +3.4
636,900 - MPMX20_00609 0.62 -2.9
637,013 + MPMX20_00609 0.70 -0.5
637,013 + MPMX20_00609 0.70 -0.6
637,013 + MPMX20_00609 0.70 -0.4
637,013 + MPMX20_00609 0.70 +0.0
637,021 - MPMX20_00609 0.70 +0.9
637,021 - MPMX20_00609 0.70 +2.2
637,021 - MPMX20_00609 0.70 -2.9
637,044 - MPMX20_00609 0.72 -0.9
637,231 + MPMX20_00609 0.85 +5.0
637,239 - MPMX20_00609 0.86 +0.6
637,239 - MPMX20_00609 0.86 +0.2
637,239 - MPMX20_00609 0.86 -2.0
637,265 + MPMX20_00609 0.87 -0.2
637,270 + MPMX20_00609 0.88 -0.5
637,273 - MPMX20_00609 0.88 -0.6
637,310 + -0.7
637,310 + -0.6
637,318 - -2.0
637,318 - +1.5
637,337 + +1.0
637,345 - -1.6
637,383 + -3.1
637,383 + +1.6
637,390 - -0.2
637,391 - +0.1
637,402 + +4.4
637,402 - -0.5
637,482 + +1.0
637,682 - MPMX20_00610 0.39 +0.4
637,690 - MPMX20_00610 0.44 +1.1
637,720 - MPMX20_00610 0.62 +2.3
637,744 + MPMX20_00610 0.77 -0.5
637,744 + MPMX20_00610 0.77 +0.2
637,744 + MPMX20_00610 0.77 +0.2
637,744 + MPMX20_00610 0.77 +0.5
637,744 + MPMX20_00610 0.77 +1.4
637,744 + MPMX20_00610 0.77 -2.0
637,744 + MPMX20_00610 0.77 +0.6
637,744 + MPMX20_00610 0.77 -2.9
637,752 - MPMX20_00610 0.82 -2.2
637,752 - MPMX20_00610 0.82 -2.1
637,752 - MPMX20_00610 0.82 +1.0
637,752 - MPMX20_00610 0.82 -0.7
637,752 - MPMX20_00610 0.82 +0.8
637,752 - MPMX20_00610 0.82 -1.7
637,752 - MPMX20_00610 0.82 +0.5
637,752 - MPMX20_00610 0.82 -1.3
637,752 - MPMX20_00610 0.82 -0.4
637,752 - MPMX20_00610 0.82 -3.8
637,752 - MPMX20_00610 0.82 -2.7
637,789 + -1.0
637,802 - -0.7
637,816 + +0.4
637,816 + +0.4
637,824 - +0.9
637,907 + MPMX20_00611 0.26 +1.0
637,915 - MPMX20_00611 0.29 +0.6
637,917 + MPMX20_00611 0.30 -1.7
637,917 + MPMX20_00611 0.30 -1.7
637,925 - MPMX20_00611 0.33 -0.6
637,926 + MPMX20_00611 0.34 +0.6
637,977 + MPMX20_00611 0.54 +0.1
638,039 + MPMX20_00611 0.78 -0.4
638,047 - MPMX20_00611 0.81 -0.0
638,156 - +1.0
638,163 - -2.1
638,173 + -0.3
638,202 + -3.1
638,202 + -0.9
638,240 - -2.8
638,245 - +0.3
638,247 + -0.9
638,251 + -1.1
638,255 - -0.2
638,259 - +3.3
638,270 - -1.6
638,275 + -0.4
638,323 - MPMX20_00612 0.11 -0.1
638,333 + MPMX20_00612 0.11 -0.0
638,339 - MPMX20_00612 0.12 -3.3
638,384 - MPMX20_00612 0.15 -3.0
638,389 - MPMX20_00612 0.15 +0.4
638,407 - MPMX20_00612 0.17 +0.9
638,429 + MPMX20_00612 0.18 -0.8
638,436 - MPMX20_00612 0.19 -3.2
638,437 - MPMX20_00612 0.19 -1.2

Or see this region's nucleotide sequence