Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00435

Experiment: TSB plate, 1:1 coculture with Enterobacter_ludwigii_PH2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00433 and MPMX20_00434 are separated by 29 nucleotidesMPMX20_00434 and MPMX20_00435 are separated by 10 nucleotidesMPMX20_00435 and MPMX20_00436 are separated by 10 nucleotidesMPMX20_00436 and MPMX20_00437 overlap by 8 nucleotides MPMX20_00433: MPMX20_00433 - HTH-type transcriptional activator AmpR, at 446,644 to 447,519 _00433 MPMX20_00434: MPMX20_00434 - Fumarate reductase subunit D, at 447,549 to 447,908 _00434 MPMX20_00435: MPMX20_00435 - Fumarate reductase subunit C, at 447,919 to 448,314 _00435 MPMX20_00436: MPMX20_00436 - Fumarate reductase iron-sulfur subunit, at 448,325 to 449,059 _00436 MPMX20_00437: MPMX20_00437 - Fumarate reductase flavoprotein subunit, at 449,052 to 450,842 _00437 Position (kb) 447 448 449Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 447.008 kb on + strand, within MPMX20_00433at 447.009 kb on + strand, within MPMX20_00433at 447.074 kb on - strand, within MPMX20_00433at 447.074 kb on - strand, within MPMX20_00433at 447.084 kb on + strand, within MPMX20_00433at 447.086 kb on + strand, within MPMX20_00433at 447.094 kb on - strand, within MPMX20_00433at 447.117 kb on - strand, within MPMX20_00433at 447.128 kb on - strand, within MPMX20_00433at 447.147 kb on + strand, within MPMX20_00433at 447.197 kb on + strand, within MPMX20_00433at 447.205 kb on + strand, within MPMX20_00433at 447.207 kb on + strand, within MPMX20_00433at 447.246 kb on - strand, within MPMX20_00433at 447.272 kb on + strand, within MPMX20_00433at 447.292 kb on + strand, within MPMX20_00433at 447.378 kb on + strand, within MPMX20_00433at 447.424 kb on - strand, within MPMX20_00433at 447.475 kb on - strandat 447.546 kb on - strandat 447.572 kb on + strandat 447.666 kb on + strand, within MPMX20_00434at 447.666 kb on + strand, within MPMX20_00434at 447.671 kb on + strand, within MPMX20_00434at 447.671 kb on + strand, within MPMX20_00434at 447.671 kb on + strand, within MPMX20_00434at 447.671 kb on + strand, within MPMX20_00434at 447.676 kb on + strand, within MPMX20_00434at 447.679 kb on - strand, within MPMX20_00434at 447.679 kb on - strand, within MPMX20_00434at 447.681 kb on - strand, within MPMX20_00434at 447.713 kb on - strand, within MPMX20_00434at 447.746 kb on - strand, within MPMX20_00434at 447.746 kb on - strand, within MPMX20_00434at 447.747 kb on - strand, within MPMX20_00434at 447.777 kb on - strand, within MPMX20_00434at 447.799 kb on - strand, within MPMX20_00434at 447.799 kb on - strand, within MPMX20_00434at 447.799 kb on - strand, within MPMX20_00434at 447.799 kb on - strand, within MPMX20_00434at 447.850 kb on + strand, within MPMX20_00434at 447.850 kb on + strand, within MPMX20_00434at 447.903 kb on + strandat 447.906 kb on - strandat 447.910 kb on + strandat 447.910 kb on + strandat 447.915 kb on + strandat 447.920 kb on + strandat 447.920 kb on + strandat 447.920 kb on + strandat 447.922 kb on - strandat 447.923 kb on - strandat 447.928 kb on - strandat 447.928 kb on - strandat 447.928 kb on - strandat 447.940 kb on + strandat 448.137 kb on + strand, within MPMX20_00435at 448.186 kb on - strand, within MPMX20_00435at 448.194 kb on + strand, within MPMX20_00435at 448.233 kb on + strand, within MPMX20_00435at 448.233 kb on + strand, within MPMX20_00435at 448.233 kb on + strand, within MPMX20_00435at 448.233 kb on + strand, within MPMX20_00435at 448.233 kb on + strand, within MPMX20_00435at 448.241 kb on - strand, within MPMX20_00435at 448.241 kb on - strand, within MPMX20_00435at 448.241 kb on - strand, within MPMX20_00435at 448.278 kb on - strandat 448.296 kb on - strandat 448.333 kb on + strandat 448.333 kb on + strandat 448.379 kb on - strandat 448.379 kb on - strandat 448.389 kb on - strandat 448.420 kb on + strand, within MPMX20_00436at 448.428 kb on - strand, within MPMX20_00436at 448.468 kb on - strand, within MPMX20_00436at 448.501 kb on + strand, within MPMX20_00436at 448.511 kb on + strand, within MPMX20_00436at 448.516 kb on + strand, within MPMX20_00436at 448.526 kb on - strand, within MPMX20_00436at 448.558 kb on + strand, within MPMX20_00436at 448.598 kb on - strand, within MPMX20_00436at 448.600 kb on + strand, within MPMX20_00436at 448.603 kb on - strand, within MPMX20_00436at 448.603 kb on - strand, within MPMX20_00436at 448.608 kb on - strand, within MPMX20_00436at 448.651 kb on + strand, within MPMX20_00436at 448.659 kb on + strand, within MPMX20_00436at 448.772 kb on - strand, within MPMX20_00436at 448.788 kb on + strand, within MPMX20_00436at 448.805 kb on - strand, within MPMX20_00436at 448.912 kb on + strand, within MPMX20_00436at 448.999 kb on - strandat 449.011 kb on - strandat 449.146 kb on - strandat 449.176 kb on + strandat 449.180 kb on + strandat 449.226 kb on + strandat 449.226 kb on + strandat 449.285 kb on + strand, within MPMX20_00437at 449.290 kb on - strand, within MPMX20_00437at 449.308 kb on - strand, within MPMX20_00437

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Enterobacter_ludwigii_PH2
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447,008 + MPMX20_00433 0.42 -1.4
447,009 + MPMX20_00433 0.42 -2.2
447,074 - MPMX20_00433 0.49 -0.0
447,074 - MPMX20_00433 0.49 -1.0
447,084 + MPMX20_00433 0.50 -0.0
447,086 + MPMX20_00433 0.50 +1.5
447,094 - MPMX20_00433 0.51 +0.3
447,117 - MPMX20_00433 0.54 +0.1
447,128 - MPMX20_00433 0.55 -0.9
447,147 + MPMX20_00433 0.57 -0.8
447,197 + MPMX20_00433 0.63 +1.2
447,205 + MPMX20_00433 0.64 -0.2
447,207 + MPMX20_00433 0.64 +0.6
447,246 - MPMX20_00433 0.69 -0.2
447,272 + MPMX20_00433 0.72 +0.4
447,292 + MPMX20_00433 0.74 -1.7
447,378 + MPMX20_00433 0.84 +0.1
447,424 - MPMX20_00433 0.89 -1.4
447,475 - +1.6
447,546 - -2.6
447,572 + -3.7
447,666 + MPMX20_00434 0.33 -0.0
447,666 + MPMX20_00434 0.33 -1.6
447,671 + MPMX20_00434 0.34 -0.4
447,671 + MPMX20_00434 0.34 +0.3
447,671 + MPMX20_00434 0.34 +5.6
447,671 + MPMX20_00434 0.34 +0.3
447,676 + MPMX20_00434 0.35 -1.9
447,679 - MPMX20_00434 0.36 -1.4
447,679 - MPMX20_00434 0.36 -3.3
447,681 - MPMX20_00434 0.37 -0.8
447,713 - MPMX20_00434 0.46 -3.3
447,746 - MPMX20_00434 0.55 -0.5
447,746 - MPMX20_00434 0.55 -0.2
447,747 - MPMX20_00434 0.55 -1.3
447,777 - MPMX20_00434 0.63 +1.0
447,799 - MPMX20_00434 0.69 +0.2
447,799 - MPMX20_00434 0.69 -2.1
447,799 - MPMX20_00434 0.69 +1.0
447,799 - MPMX20_00434 0.69 -0.4
447,850 + MPMX20_00434 0.84 -1.5
447,850 + MPMX20_00434 0.84 -1.8
447,903 + -0.1
447,906 - +0.5
447,910 + -3.4
447,910 + -2.2
447,915 + -1.7
447,920 + -1.3
447,920 + +1.4
447,920 + -0.6
447,922 - -1.1
447,923 - +1.8
447,928 - -2.7
447,928 - -1.3
447,928 - -2.9
447,940 + -0.4
448,137 + MPMX20_00435 0.55 -2.2
448,186 - MPMX20_00435 0.67 +0.6
448,194 + MPMX20_00435 0.69 +0.9
448,233 + MPMX20_00435 0.79 -2.5
448,233 + MPMX20_00435 0.79 -3.3
448,233 + MPMX20_00435 0.79 -0.6
448,233 + MPMX20_00435 0.79 +1.0
448,233 + MPMX20_00435 0.79 -0.1
448,241 - MPMX20_00435 0.81 +0.0
448,241 - MPMX20_00435 0.81 -2.5
448,241 - MPMX20_00435 0.81 -2.6
448,278 - -1.3
448,296 - -1.5
448,333 + -1.9
448,333 + -2.5
448,379 - -2.9
448,379 - -0.0
448,389 - -0.8
448,420 + MPMX20_00436 0.13 -0.8
448,428 - MPMX20_00436 0.14 -1.6
448,468 - MPMX20_00436 0.19 -1.5
448,501 + MPMX20_00436 0.24 -0.7
448,511 + MPMX20_00436 0.25 -2.8
448,516 + MPMX20_00436 0.26 -1.6
448,526 - MPMX20_00436 0.27 -4.4
448,558 + MPMX20_00436 0.32 -1.4
448,598 - MPMX20_00436 0.37 -3.1
448,600 + MPMX20_00436 0.37 -1.3
448,603 - MPMX20_00436 0.38 -2.8
448,603 - MPMX20_00436 0.38 -2.7
448,608 - MPMX20_00436 0.39 -2.4
448,651 + MPMX20_00436 0.44 -0.5
448,659 + MPMX20_00436 0.45 -1.8
448,772 - MPMX20_00436 0.61 -0.0
448,788 + MPMX20_00436 0.63 -2.4
448,805 - MPMX20_00436 0.65 +1.0
448,912 + MPMX20_00436 0.80 -2.2
448,999 - +1.1
449,011 - +0.6
449,146 - -0.4
449,176 + +1.0
449,180 + -0.7
449,226 + +1.6
449,226 + +0.4
449,285 + MPMX20_00437 0.13 +0.2
449,290 - MPMX20_00437 0.13 +0.6
449,308 - MPMX20_00437 0.14 -3.3

Or see this region's nucleotide sequence