Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04547

Experiment: LB plate, 1:1 coculture with Enterobacter_ludwigii_PH2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_04545 and MPMX20_04546 are separated by 0 nucleotidesMPMX20_04546 and MPMX20_04547 are separated by 112 nucleotidesMPMX20_04547 and MPMX20_04548 are separated by 111 nucleotidesMPMX20_04548 and MPMX20_04549 are separated by 33 nucleotides MPMX20_04545: MPMX20_04545 - Flavodoxin/ferredoxin--NADP reductase, at 4,758,771 to 4,759,517 _04545 MPMX20_04546: MPMX20_04546 - hypothetical protein, at 4,759,518 to 4,759,937 _04546 MPMX20_04547: MPMX20_04547 - hypothetical protein, at 4,760,050 to 4,760,646 _04547 MPMX20_04548: MPMX20_04548 - Triosephosphate isomerase, at 4,760,758 to 4,761,525 _04548 MPMX20_04549: MPMX20_04549 - hypothetical protein, at 4,761,559 to 4,762,863 _04549 Position (kb) 4760 4761Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 4759.103 kb on - strand, within MPMX20_04545at 4759.187 kb on + strand, within MPMX20_04545at 4759.187 kb on + strand, within MPMX20_04545at 4759.187 kb on + strand, within MPMX20_04545at 4759.187 kb on + strand, within MPMX20_04545at 4759.187 kb on + strand, within MPMX20_04545at 4759.195 kb on - strand, within MPMX20_04545at 4759.195 kb on - strand, within MPMX20_04545at 4759.222 kb on + strand, within MPMX20_04545at 4759.225 kb on - strand, within MPMX20_04545at 4759.230 kb on - strand, within MPMX20_04545at 4759.309 kb on + strand, within MPMX20_04545at 4759.370 kb on + strand, within MPMX20_04545at 4759.532 kb on + strandat 4759.630 kb on - strand, within MPMX20_04546at 4759.669 kb on - strand, within MPMX20_04546at 4759.679 kb on - strand, within MPMX20_04546at 4759.744 kb on + strand, within MPMX20_04546at 4759.785 kb on - strand, within MPMX20_04546at 4759.815 kb on - strand, within MPMX20_04546at 4759.933 kb on - strandat 4759.935 kb on + strandat 4759.942 kb on + strandat 4759.987 kb on - strandat 4760.047 kb on - strandat 4760.047 kb on - strandat 4760.076 kb on + strandat 4760.131 kb on + strand, within MPMX20_04547at 4760.143 kb on + strand, within MPMX20_04547at 4760.227 kb on - strand, within MPMX20_04547at 4760.228 kb on - strand, within MPMX20_04547at 4760.270 kb on + strand, within MPMX20_04547at 4760.275 kb on + strand, within MPMX20_04547at 4760.278 kb on - strand, within MPMX20_04547at 4760.278 kb on - strand, within MPMX20_04547at 4760.283 kb on - strand, within MPMX20_04547at 4760.283 kb on - strand, within MPMX20_04547at 4760.283 kb on - strand, within MPMX20_04547at 4760.334 kb on - strand, within MPMX20_04547at 4760.369 kb on + strand, within MPMX20_04547at 4760.387 kb on + strand, within MPMX20_04547at 4760.395 kb on - strand, within MPMX20_04547at 4760.395 kb on - strand, within MPMX20_04547at 4760.395 kb on - strand, within MPMX20_04547at 4760.427 kb on + strand, within MPMX20_04547at 4760.440 kb on + strand, within MPMX20_04547at 4760.466 kb on - strand, within MPMX20_04547at 4760.545 kb on + strand, within MPMX20_04547at 4760.545 kb on + strand, within MPMX20_04547at 4760.545 kb on + strand, within MPMX20_04547at 4760.553 kb on - strand, within MPMX20_04547at 4760.712 kb on + strandat 4761.500 kb on + strandat 4761.630 kb on + strandat 4761.630 kb on + strandat 4761.630 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB plate, 1:1 coculture with Enterobacter_ludwigii_PH2
remove
4,759,103 - MPMX20_04545 0.44 +0.2
4,759,187 + MPMX20_04545 0.56 +0.8
4,759,187 + MPMX20_04545 0.56 -1.5
4,759,187 + MPMX20_04545 0.56 -1.4
4,759,187 + MPMX20_04545 0.56 +0.8
4,759,187 + MPMX20_04545 0.56 +0.9
4,759,195 - MPMX20_04545 0.57 +1.4
4,759,195 - MPMX20_04545 0.57 -0.1
4,759,222 + MPMX20_04545 0.60 +0.2
4,759,225 - MPMX20_04545 0.61 +1.7
4,759,230 - MPMX20_04545 0.61 +0.1
4,759,309 + MPMX20_04545 0.72 +0.7
4,759,370 + MPMX20_04545 0.80 +0.6
4,759,532 + +0.0
4,759,630 - MPMX20_04546 0.27 -1.4
4,759,669 - MPMX20_04546 0.36 +0.2
4,759,679 - MPMX20_04546 0.38 +0.1
4,759,744 + MPMX20_04546 0.54 -1.3
4,759,785 - MPMX20_04546 0.64 +1.0
4,759,815 - MPMX20_04546 0.71 +1.1
4,759,933 - -0.4
4,759,935 + -1.9
4,759,942 + +2.7
4,759,987 - +0.8
4,760,047 - -0.1
4,760,047 - +0.5
4,760,076 + +4.5
4,760,131 + MPMX20_04547 0.14 -0.3
4,760,143 + MPMX20_04547 0.16 +6.0
4,760,227 - MPMX20_04547 0.30 +3.1
4,760,228 - MPMX20_04547 0.30 -0.0
4,760,270 + MPMX20_04547 0.37 +0.5
4,760,275 + MPMX20_04547 0.38 -1.1
4,760,278 - MPMX20_04547 0.38 -0.5
4,760,278 - MPMX20_04547 0.38 +0.4
4,760,283 - MPMX20_04547 0.39 +0.1
4,760,283 - MPMX20_04547 0.39 +0.6
4,760,283 - MPMX20_04547 0.39 +0.3
4,760,334 - MPMX20_04547 0.48 +0.4
4,760,369 + MPMX20_04547 0.53 +0.0
4,760,387 + MPMX20_04547 0.56 +2.7
4,760,395 - MPMX20_04547 0.58 -1.1
4,760,395 - MPMX20_04547 0.58 -0.1
4,760,395 - MPMX20_04547 0.58 -1.4
4,760,427 + MPMX20_04547 0.63 -3.0
4,760,440 + MPMX20_04547 0.65 +0.7
4,760,466 - MPMX20_04547 0.70 -1.2
4,760,545 + MPMX20_04547 0.83 +1.1
4,760,545 + MPMX20_04547 0.83 +3.0
4,760,545 + MPMX20_04547 0.83 +0.8
4,760,553 - MPMX20_04547 0.84 +0.1
4,760,712 + -1.4
4,761,500 + +2.7
4,761,630 + +1.6
4,761,630 + +0.4
4,761,630 + +2.2

Or see this region's nucleotide sequence