Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00134

Experiment: LB plate, 1:1 coculture with Enterobacter_ludwigii_PH2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00132 and MPMX20_00133 are separated by 58 nucleotidesMPMX20_00133 and MPMX20_00134 overlap by 4 nucleotidesMPMX20_00134 and MPMX20_00135 are separated by 99 nucleotides MPMX20_00132: MPMX20_00132 - putative protein YibL, at 133,724 to 134,086 _00132 MPMX20_00133: MPMX20_00133 - Mannitol operon repressor, at 134,145 to 134,735 _00133 MPMX20_00134: MPMX20_00134 - Mannitol-1-phosphate 5-dehydrogenase, at 134,732 to 135,880 _00134 MPMX20_00135: MPMX20_00135 - PTS system mannitol-specific EIICBA component, at 135,980 to 137,887 _00135 Position (kb) 134 135 136Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 133.791 kb on + strand, within MPMX20_00132at 133.870 kb on + strand, within MPMX20_00132at 133.918 kb on - strand, within MPMX20_00132at 134.030 kb on + strand, within MPMX20_00132at 134.043 kb on - strand, within MPMX20_00132at 134.123 kb on + strandat 134.123 kb on + strandat 134.123 kb on + strandat 134.131 kb on - strandat 134.131 kb on - strandat 134.131 kb on - strandat 134.135 kb on - strandat 134.256 kb on - strand, within MPMX20_00133at 134.260 kb on + strand, within MPMX20_00133at 134.260 kb on + strand, within MPMX20_00133at 134.284 kb on + strand, within MPMX20_00133at 134.307 kb on + strand, within MPMX20_00133at 134.315 kb on - strand, within MPMX20_00133at 134.331 kb on + strand, within MPMX20_00133at 134.344 kb on + strand, within MPMX20_00133at 134.349 kb on + strand, within MPMX20_00133at 134.350 kb on - strand, within MPMX20_00133at 134.370 kb on + strand, within MPMX20_00133at 134.370 kb on + strand, within MPMX20_00133at 134.389 kb on + strand, within MPMX20_00133at 134.389 kb on + strand, within MPMX20_00133at 134.397 kb on - strand, within MPMX20_00133at 134.432 kb on + strand, within MPMX20_00133at 134.484 kb on + strand, within MPMX20_00133at 134.529 kb on - strand, within MPMX20_00133at 134.549 kb on - strand, within MPMX20_00133at 134.566 kb on + strand, within MPMX20_00133at 134.702 kb on + strandat 134.712 kb on + strandat 134.712 kb on + strandat 134.715 kb on - strandat 134.715 kb on - strandat 134.717 kb on + strandat 134.720 kb on - strandat 134.720 kb on - strandat 134.720 kb on - strandat 134.786 kb on + strandat 134.791 kb on + strandat 134.856 kb on - strand, within MPMX20_00134at 134.909 kb on - strand, within MPMX20_00134at 134.925 kb on + strand, within MPMX20_00134at 134.928 kb on + strand, within MPMX20_00134at 135.109 kb on - strand, within MPMX20_00134at 135.140 kb on - strand, within MPMX20_00134at 135.140 kb on - strand, within MPMX20_00134at 135.140 kb on - strand, within MPMX20_00134at 135.163 kb on - strand, within MPMX20_00134at 135.213 kb on + strand, within MPMX20_00134at 135.221 kb on - strand, within MPMX20_00134at 135.242 kb on + strand, within MPMX20_00134at 135.309 kb on + strand, within MPMX20_00134at 135.309 kb on + strand, within MPMX20_00134at 135.309 kb on + strand, within MPMX20_00134at 135.309 kb on + strand, within MPMX20_00134at 135.309 kb on + strand, within MPMX20_00134at 135.309 kb on + strand, within MPMX20_00134at 135.347 kb on + strand, within MPMX20_00134at 135.413 kb on + strand, within MPMX20_00134at 135.457 kb on - strand, within MPMX20_00134at 135.486 kb on + strand, within MPMX20_00134at 135.486 kb on + strand, within MPMX20_00134at 135.496 kb on + strand, within MPMX20_00134at 135.533 kb on + strand, within MPMX20_00134at 135.536 kb on - strand, within MPMX20_00134at 135.576 kb on + strand, within MPMX20_00134at 135.584 kb on - strand, within MPMX20_00134at 135.637 kb on + strand, within MPMX20_00134at 135.665 kb on + strand, within MPMX20_00134at 135.694 kb on + strand, within MPMX20_00134at 135.705 kb on + strand, within MPMX20_00134at 135.705 kb on + strand, within MPMX20_00134at 135.848 kb on + strandat 135.856 kb on - strandat 135.882 kb on + strandat 135.914 kb on + strandat 135.914 kb on + strandat 135.914 kb on + strandat 135.922 kb on - strandat 135.927 kb on + strandat 135.934 kb on - strandat 135.934 kb on - strandat 135.935 kb on - strandat 135.935 kb on - strandat 135.935 kb on - strandat 135.935 kb on - strandat 135.935 kb on - strandat 135.938 kb on + strandat 135.939 kb on + strandat 135.939 kb on + strandat 135.939 kb on + strandat 135.939 kb on + strandat 135.939 kb on + strandat 135.939 kb on + strandat 135.939 kb on + strandat 135.939 kb on + strandat 135.939 kb on + strandat 135.939 kb on + strandat 135.939 kb on + strandat 135.939 kb on + strandat 135.939 kb on + strandat 135.939 kb on + strandat 135.939 kb on + strandat 135.939 kb on + strandat 135.946 kb on - strandat 135.947 kb on - strandat 135.947 kb on - strandat 135.947 kb on - strandat 135.947 kb on - strandat 135.947 kb on - strandat 135.947 kb on - strandat 135.947 kb on - strandat 135.947 kb on - strandat 135.947 kb on - strandat 135.947 kb on - strandat 135.947 kb on - strandat 135.947 kb on - strandat 135.947 kb on - strandat 135.947 kb on - strandat 135.947 kb on - strandat 136.020 kb on + strandat 136.077 kb on - strandat 136.113 kb on - strandat 136.118 kb on - strandat 136.161 kb on - strandat 136.244 kb on - strand, within MPMX20_00135at 136.250 kb on - strand, within MPMX20_00135at 136.275 kb on - strand, within MPMX20_00135at 136.283 kb on - strand, within MPMX20_00135at 136.285 kb on - strand, within MPMX20_00135at 136.364 kb on - strand, within MPMX20_00135at 136.406 kb on + strand, within MPMX20_00135at 136.411 kb on + strand, within MPMX20_00135at 136.473 kb on + strand, within MPMX20_00135at 136.481 kb on - strand, within MPMX20_00135at 136.492 kb on + strand, within MPMX20_00135at 136.507 kb on + strand, within MPMX20_00135at 136.515 kb on - strand, within MPMX20_00135at 136.528 kb on + strand, within MPMX20_00135at 136.613 kb on + strand, within MPMX20_00135at 136.664 kb on + strand, within MPMX20_00135at 136.672 kb on - strand, within MPMX20_00135at 136.686 kb on + strand, within MPMX20_00135at 136.694 kb on - strand, within MPMX20_00135

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Per-strain Table

Position Strand Gene LocusTag Fraction LB plate, 1:1 coculture with Enterobacter_ludwigii_PH2
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133,791 + MPMX20_00132 0.18 -1.6
133,870 + MPMX20_00132 0.40 +0.7
133,918 - MPMX20_00132 0.53 -1.5
134,030 + MPMX20_00132 0.84 -1.6
134,043 - MPMX20_00132 0.88 -1.8
134,123 + -1.5
134,123 + -1.4
134,123 + -3.0
134,131 - -3.2
134,131 - +0.7
134,131 - -0.6
134,135 - +1.8
134,256 - MPMX20_00133 0.19 +1.7
134,260 + MPMX20_00133 0.19 +2.1
134,260 + MPMX20_00133 0.19 -2.1
134,284 + MPMX20_00133 0.24 +0.3
134,307 + MPMX20_00133 0.27 +0.1
134,315 - MPMX20_00133 0.29 -0.1
134,331 + MPMX20_00133 0.31 -1.4
134,344 + MPMX20_00133 0.34 -1.1
134,349 + MPMX20_00133 0.35 +1.1
134,350 - MPMX20_00133 0.35 +0.0
134,370 + MPMX20_00133 0.38 -2.0
134,370 + MPMX20_00133 0.38 -0.6
134,389 + MPMX20_00133 0.41 -1.1
134,389 + MPMX20_00133 0.41 -2.5
134,397 - MPMX20_00133 0.43 -1.1
134,432 + MPMX20_00133 0.49 -2.4
134,484 + MPMX20_00133 0.57 +0.1
134,529 - MPMX20_00133 0.65 -0.3
134,549 - MPMX20_00133 0.68 -0.7
134,566 + MPMX20_00133 0.71 -2.9
134,702 + -0.1
134,712 + +1.1
134,712 + +0.7
134,715 - -0.5
134,715 - +0.1
134,717 + +0.6
134,720 - -0.6
134,720 - +0.6
134,720 - +1.5
134,786 + -2.0
134,791 + -3.0
134,856 - MPMX20_00134 0.11 -0.4
134,909 - MPMX20_00134 0.15 -1.1
134,925 + MPMX20_00134 0.17 +1.7
134,928 + MPMX20_00134 0.17 -1.4
135,109 - MPMX20_00134 0.33 -0.1
135,140 - MPMX20_00134 0.36 -3.8
135,140 - MPMX20_00134 0.36 -0.6
135,140 - MPMX20_00134 0.36 -0.4
135,163 - MPMX20_00134 0.38 -1.8
135,213 + MPMX20_00134 0.42 -0.1
135,221 - MPMX20_00134 0.43 +0.4
135,242 + MPMX20_00134 0.44 -0.1
135,309 + MPMX20_00134 0.50 -3.6
135,309 + MPMX20_00134 0.50 -1.0
135,309 + MPMX20_00134 0.50 -4.1
135,309 + MPMX20_00134 0.50 -2.2
135,309 + MPMX20_00134 0.50 -1.1
135,309 + MPMX20_00134 0.50 -2.0
135,347 + MPMX20_00134 0.54 -3.6
135,413 + MPMX20_00134 0.59 -0.2
135,457 - MPMX20_00134 0.63 +0.9
135,486 + MPMX20_00134 0.66 -3.5
135,486 + MPMX20_00134 0.66 -0.7
135,496 + MPMX20_00134 0.66 -1.8
135,533 + MPMX20_00134 0.70 -2.5
135,536 - MPMX20_00134 0.70 -2.6
135,576 + MPMX20_00134 0.73 -1.7
135,584 - MPMX20_00134 0.74 -1.3
135,637 + MPMX20_00134 0.79 -0.1
135,665 + MPMX20_00134 0.81 -3.3
135,694 + MPMX20_00134 0.84 -2.7
135,705 + MPMX20_00134 0.85 -0.8
135,705 + MPMX20_00134 0.85 -1.5
135,848 + -2.4
135,856 - -0.7
135,882 + -1.1
135,914 + -1.1
135,914 + -0.7
135,914 + +1.1
135,922 - +0.4
135,927 + +0.4
135,934 - -0.0
135,934 - -0.1
135,935 - -1.4
135,935 - +2.4
135,935 - -3.8
135,935 - -2.8
135,935 - -0.7
135,938 + -3.3
135,939 + +0.8
135,939 + -0.7
135,939 + +0.1
135,939 + -2.8
135,939 + +0.4
135,939 + +2.1
135,939 + -2.6
135,939 + +0.4
135,939 + -1.6
135,939 + -0.6
135,939 + -0.5
135,939 + +0.1
135,939 + -0.8
135,939 + -0.8
135,939 + +0.1
135,939 + -0.2
135,946 - -0.7
135,947 - -2.7
135,947 - +1.3
135,947 - -2.3
135,947 - -0.6
135,947 - -1.0
135,947 - +0.3
135,947 - -1.4
135,947 - +0.7
135,947 - -0.1
135,947 - -1.4
135,947 - -2.4
135,947 - -0.6
135,947 - +2.1
135,947 - +2.7
135,947 - -0.9
136,020 + -4.1
136,077 - -0.1
136,113 - -0.9
136,118 - +0.6
136,161 - -0.1
136,244 - MPMX20_00135 0.14 +1.8
136,250 - MPMX20_00135 0.14 -0.4
136,275 - MPMX20_00135 0.15 -0.1
136,283 - MPMX20_00135 0.16 +2.1
136,285 - MPMX20_00135 0.16 -1.1
136,364 - MPMX20_00135 0.20 +0.2
136,406 + MPMX20_00135 0.22 +0.7
136,411 + MPMX20_00135 0.23 +0.7
136,473 + MPMX20_00135 0.26 +0.3
136,481 - MPMX20_00135 0.26 +0.1
136,492 + MPMX20_00135 0.27 +2.8
136,507 + MPMX20_00135 0.28 +2.6
136,515 - MPMX20_00135 0.28 -1.4
136,528 + MPMX20_00135 0.29 +1.3
136,613 + MPMX20_00135 0.33 +1.2
136,664 + MPMX20_00135 0.36 -2.4
136,672 - MPMX20_00135 0.36 +0.1
136,686 + MPMX20_00135 0.37 -0.1
136,694 - MPMX20_00135 0.37 -0.3

Or see this region's nucleotide sequence