Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04043

Experiment: LB plate, 1:1 coculture with Pseudomonas_plecoglossicida_TBS_049

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04041 and MPMX20_04042 overlap by 11 nucleotidesMPMX20_04042 and MPMX20_04043 are separated by 15 nucleotidesMPMX20_04043 and MPMX20_04044 overlap by 4 nucleotides MPMX20_04041: MPMX20_04041 - N-acetylgalactosamine permease IIC component 1, at 4,238,740 to 4,239,519 _04041 MPMX20_04042: MPMX20_04042 - PTS system mannose-specific EIID component, at 4,239,509 to 4,240,387 _04042 MPMX20_04043: MPMX20_04043 - hypothetical protein, at 4,240,403 to 4,240,837 _04043 MPMX20_04044: MPMX20_04044 - N-acetylgalactosamine-6-phosphate deacetylase, at 4,240,834 to 4,241,967 _04044 Position (kb) 4240 4241Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6at 4239.474 kb on + strandat 4239.533 kb on - strandat 4239.552 kb on + strandat 4239.634 kb on + strand, within MPMX20_04042at 4239.727 kb on + strand, within MPMX20_04042at 4239.752 kb on + strand, within MPMX20_04042at 4239.760 kb on - strand, within MPMX20_04042at 4239.760 kb on - strand, within MPMX20_04042at 4239.765 kb on - strand, within MPMX20_04042at 4239.774 kb on + strand, within MPMX20_04042at 4239.782 kb on + strand, within MPMX20_04042at 4239.857 kb on + strand, within MPMX20_04042at 4239.884 kb on - strand, within MPMX20_04042at 4239.925 kb on + strand, within MPMX20_04042at 4239.925 kb on + strand, within MPMX20_04042at 4239.930 kb on + strand, within MPMX20_04042at 4239.930 kb on + strand, within MPMX20_04042at 4239.933 kb on - strand, within MPMX20_04042at 4239.963 kb on + strand, within MPMX20_04042at 4239.963 kb on + strand, within MPMX20_04042at 4239.977 kb on - strand, within MPMX20_04042at 4239.977 kb on - strand, within MPMX20_04042at 4239.992 kb on - strand, within MPMX20_04042at 4240.016 kb on - strand, within MPMX20_04042at 4240.018 kb on + strand, within MPMX20_04042at 4240.018 kb on + strand, within MPMX20_04042at 4240.018 kb on + strand, within MPMX20_04042at 4240.018 kb on + strand, within MPMX20_04042at 4240.018 kb on + strand, within MPMX20_04042at 4240.018 kb on + strand, within MPMX20_04042at 4240.018 kb on + strand, within MPMX20_04042at 4240.018 kb on + strand, within MPMX20_04042at 4240.018 kb on + strand, within MPMX20_04042at 4240.018 kb on + strand, within MPMX20_04042at 4240.018 kb on + strand, within MPMX20_04042at 4240.018 kb on + strand, within MPMX20_04042at 4240.018 kb on + strand, within MPMX20_04042at 4240.026 kb on - strand, within MPMX20_04042at 4240.026 kb on - strand, within MPMX20_04042at 4240.026 kb on - strand, within MPMX20_04042at 4240.026 kb on - strand, within MPMX20_04042at 4240.026 kb on - strand, within MPMX20_04042at 4240.026 kb on - strand, within MPMX20_04042at 4240.026 kb on - strand, within MPMX20_04042at 4240.026 kb on - strand, within MPMX20_04042at 4240.026 kb on - strand, within MPMX20_04042at 4240.026 kb on - strand, within MPMX20_04042at 4240.026 kb on - strand, within MPMX20_04042at 4240.026 kb on - strand, within MPMX20_04042at 4240.096 kb on + strand, within MPMX20_04042at 4240.096 kb on + strand, within MPMX20_04042at 4240.096 kb on + strand, within MPMX20_04042at 4240.096 kb on + strand, within MPMX20_04042at 4240.104 kb on - strand, within MPMX20_04042at 4240.122 kb on + strand, within MPMX20_04042at 4240.130 kb on + strand, within MPMX20_04042at 4240.137 kb on + strand, within MPMX20_04042at 4240.181 kb on + strand, within MPMX20_04042at 4240.183 kb on + strand, within MPMX20_04042at 4240.189 kb on - strand, within MPMX20_04042at 4240.189 kb on - strand, within MPMX20_04042at 4240.201 kb on + strand, within MPMX20_04042at 4240.252 kb on + strand, within MPMX20_04042at 4240.276 kb on + strand, within MPMX20_04042at 4240.276 kb on + strand, within MPMX20_04042at 4240.277 kb on + strand, within MPMX20_04042at 4240.278 kb on + strand, within MPMX20_04042at 4240.284 kb on - strand, within MPMX20_04042at 4240.284 kb on - strand, within MPMX20_04042at 4240.284 kb on - strand, within MPMX20_04042at 4240.284 kb on - strand, within MPMX20_04042at 4240.284 kb on - strand, within MPMX20_04042at 4240.284 kb on - strand, within MPMX20_04042at 4240.284 kb on - strand, within MPMX20_04042at 4240.284 kb on - strand, within MPMX20_04042at 4240.285 kb on - strand, within MPMX20_04042at 4240.286 kb on - strand, within MPMX20_04042at 4240.322 kb on - strandat 4240.344 kb on + strandat 4240.344 kb on + strandat 4240.369 kb on + strandat 4240.369 kb on + strandat 4240.397 kb on - strandat 4240.446 kb on + strandat 4240.454 kb on - strand, within MPMX20_04043at 4240.497 kb on - strand, within MPMX20_04043at 4240.521 kb on + strand, within MPMX20_04043at 4240.536 kb on + strand, within MPMX20_04043at 4240.616 kb on - strand, within MPMX20_04043at 4240.629 kb on + strand, within MPMX20_04043at 4240.672 kb on - strand, within MPMX20_04043at 4240.674 kb on + strand, within MPMX20_04043at 4240.813 kb on - strandat 4240.846 kb on - strandat 4240.868 kb on - strandat 4240.883 kb on - strandat 4240.971 kb on + strand, within MPMX20_04044at 4240.971 kb on + strand, within MPMX20_04044at 4240.971 kb on + strand, within MPMX20_04044at 4240.979 kb on - strand, within MPMX20_04044at 4240.998 kb on + strand, within MPMX20_04044at 4241.017 kb on - strand, within MPMX20_04044at 4241.036 kb on + strand, within MPMX20_04044at 4241.044 kb on + strand, within MPMX20_04044at 4241.044 kb on - strand, within MPMX20_04044at 4241.116 kb on + strand, within MPMX20_04044at 4241.118 kb on + strand, within MPMX20_04044at 4241.118 kb on + strand, within MPMX20_04044at 4241.118 kb on + strand, within MPMX20_04044at 4241.118 kb on + strand, within MPMX20_04044at 4241.126 kb on - strand, within MPMX20_04044at 4241.126 kb on - strand, within MPMX20_04044at 4241.128 kb on + strand, within MPMX20_04044at 4241.152 kb on + strand, within MPMX20_04044at 4241.152 kb on + strand, within MPMX20_04044at 4241.188 kb on + strand, within MPMX20_04044at 4241.201 kb on + strand, within MPMX20_04044at 4241.229 kb on + strand, within MPMX20_04044at 4241.229 kb on + strand, within MPMX20_04044at 4241.237 kb on - strand, within MPMX20_04044at 4241.258 kb on + strand, within MPMX20_04044at 4241.264 kb on + strand, within MPMX20_04044at 4241.310 kb on - strand, within MPMX20_04044at 4241.312 kb on + strand, within MPMX20_04044at 4241.312 kb on + strand, within MPMX20_04044at 4241.312 kb on + strand, within MPMX20_04044at 4241.313 kb on + strand, within MPMX20_04044at 4241.320 kb on - strand, within MPMX20_04044at 4241.320 kb on - strand, within MPMX20_04044at 4241.369 kb on + strand, within MPMX20_04044at 4241.369 kb on + strand, within MPMX20_04044at 4241.369 kb on + strand, within MPMX20_04044at 4241.377 kb on - strand, within MPMX20_04044at 4241.377 kb on - strand, within MPMX20_04044at 4241.377 kb on - strand, within MPMX20_04044at 4241.377 kb on - strand, within MPMX20_04044at 4241.377 kb on - strand, within MPMX20_04044at 4241.489 kb on + strand, within MPMX20_04044at 4241.497 kb on - strand, within MPMX20_04044at 4241.524 kb on + strand, within MPMX20_04044at 4241.524 kb on + strand, within MPMX20_04044at 4241.543 kb on - strand, within MPMX20_04044at 4241.546 kb on + strand, within MPMX20_04044at 4241.609 kb on + strand, within MPMX20_04044at 4241.659 kb on - strand, within MPMX20_04044at 4241.734 kb on - strand, within MPMX20_04044at 4241.762 kb on - strand, within MPMX20_04044at 4241.798 kb on - strand, within MPMX20_04044at 4241.798 kb on - strand, within MPMX20_04044at 4241.817 kb on + strand, within MPMX20_04044at 4241.825 kb on - strand, within MPMX20_04044

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Per-strain Table

Position Strand Gene LocusTag Fraction LB plate, 1:1 coculture with Pseudomonas_plecoglossicida_TBS_049
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4,239,474 + -2.3
4,239,533 - +0.1
4,239,552 + +1.7
4,239,634 + MPMX20_04042 0.14 +1.9
4,239,727 + MPMX20_04042 0.25 -2.3
4,239,752 + MPMX20_04042 0.28 +1.6
4,239,760 - MPMX20_04042 0.29 +0.6
4,239,760 - MPMX20_04042 0.29 -0.8
4,239,765 - MPMX20_04042 0.29 -0.2
4,239,774 + MPMX20_04042 0.30 +0.0
4,239,782 + MPMX20_04042 0.31 +5.9
4,239,857 + MPMX20_04042 0.40 +0.0
4,239,884 - MPMX20_04042 0.43 -1.1
4,239,925 + MPMX20_04042 0.47 +0.0
4,239,925 + MPMX20_04042 0.47 -2.0
4,239,930 + MPMX20_04042 0.48 -1.9
4,239,930 + MPMX20_04042 0.48 -1.8
4,239,933 - MPMX20_04042 0.48 +2.0
4,239,963 + MPMX20_04042 0.52 -1.7
4,239,963 + MPMX20_04042 0.52 +2.4
4,239,977 - MPMX20_04042 0.53 +1.7
4,239,977 - MPMX20_04042 0.53 -0.5
4,239,992 - MPMX20_04042 0.55 -0.2
4,240,016 - MPMX20_04042 0.58 +0.4
4,240,018 + MPMX20_04042 0.58 -0.0
4,240,018 + MPMX20_04042 0.58 +1.1
4,240,018 + MPMX20_04042 0.58 -0.9
4,240,018 + MPMX20_04042 0.58 +0.4
4,240,018 + MPMX20_04042 0.58 -0.0
4,240,018 + MPMX20_04042 0.58 -0.5
4,240,018 + MPMX20_04042 0.58 -0.2
4,240,018 + MPMX20_04042 0.58 -3.2
4,240,018 + MPMX20_04042 0.58 -1.8
4,240,018 + MPMX20_04042 0.58 -2.0
4,240,018 + MPMX20_04042 0.58 -0.0
4,240,018 + MPMX20_04042 0.58 -1.1
4,240,018 + MPMX20_04042 0.58 +1.3
4,240,026 - MPMX20_04042 0.59 +1.4
4,240,026 - MPMX20_04042 0.59 +1.1
4,240,026 - MPMX20_04042 0.59 +0.7
4,240,026 - MPMX20_04042 0.59 +1.4
4,240,026 - MPMX20_04042 0.59 +0.4
4,240,026 - MPMX20_04042 0.59 +0.3
4,240,026 - MPMX20_04042 0.59 +0.6
4,240,026 - MPMX20_04042 0.59 -0.0
4,240,026 - MPMX20_04042 0.59 -0.7
4,240,026 - MPMX20_04042 0.59 +1.7
4,240,026 - MPMX20_04042 0.59 +3.4
4,240,026 - MPMX20_04042 0.59 -0.2
4,240,096 + MPMX20_04042 0.67 +0.2
4,240,096 + MPMX20_04042 0.67 -2.7
4,240,096 + MPMX20_04042 0.67 -1.0
4,240,096 + MPMX20_04042 0.67 +0.1
4,240,104 - MPMX20_04042 0.68 -0.3
4,240,122 + MPMX20_04042 0.70 -1.5
4,240,130 + MPMX20_04042 0.71 +0.6
4,240,137 + MPMX20_04042 0.71 -1.0
4,240,181 + MPMX20_04042 0.76 -0.4
4,240,183 + MPMX20_04042 0.77 -0.2
4,240,189 - MPMX20_04042 0.77 -1.1
4,240,189 - MPMX20_04042 0.77 +0.5
4,240,201 + MPMX20_04042 0.79 -0.0
4,240,252 + MPMX20_04042 0.85 +1.0
4,240,276 + MPMX20_04042 0.87 -1.9
4,240,276 + MPMX20_04042 0.87 +0.7
4,240,277 + MPMX20_04042 0.87 +1.0
4,240,278 + MPMX20_04042 0.87 -2.3
4,240,284 - MPMX20_04042 0.88 +0.2
4,240,284 - MPMX20_04042 0.88 -1.0
4,240,284 - MPMX20_04042 0.88 -0.0
4,240,284 - MPMX20_04042 0.88 -2.1
4,240,284 - MPMX20_04042 0.88 -0.9
4,240,284 - MPMX20_04042 0.88 -2.8
4,240,284 - MPMX20_04042 0.88 -0.5
4,240,284 - MPMX20_04042 0.88 +1.6
4,240,285 - MPMX20_04042 0.88 +1.0
4,240,286 - MPMX20_04042 0.88 +0.1
4,240,322 - -1.1
4,240,344 + -0.8
4,240,344 + -3.9
4,240,369 + -0.0
4,240,369 + +0.9
4,240,397 - +3.0
4,240,446 + +0.5
4,240,454 - MPMX20_04043 0.12 -1.4
4,240,497 - MPMX20_04043 0.22 +0.1
4,240,521 + MPMX20_04043 0.27 -1.4
4,240,536 + MPMX20_04043 0.31 -1.0
4,240,616 - MPMX20_04043 0.49 +2.4
4,240,629 + MPMX20_04043 0.52 +4.6
4,240,672 - MPMX20_04043 0.62 -1.4
4,240,674 + MPMX20_04043 0.62 -0.9
4,240,813 - +0.4
4,240,846 - -1.0
4,240,868 - -1.4
4,240,883 - -1.3
4,240,971 + MPMX20_04044 0.12 +0.7
4,240,971 + MPMX20_04044 0.12 +2.3
4,240,971 + MPMX20_04044 0.12 +2.2
4,240,979 - MPMX20_04044 0.13 +0.3
4,240,998 + MPMX20_04044 0.14 +2.3
4,241,017 - MPMX20_04044 0.16 +0.2
4,241,036 + MPMX20_04044 0.18 +0.8
4,241,044 + MPMX20_04044 0.19 +1.9
4,241,044 - MPMX20_04044 0.19 -2.2
4,241,116 + MPMX20_04044 0.25 -0.2
4,241,118 + MPMX20_04044 0.25 -0.0
4,241,118 + MPMX20_04044 0.25 +0.6
4,241,118 + MPMX20_04044 0.25 -1.0
4,241,118 + MPMX20_04044 0.25 -0.5
4,241,126 - MPMX20_04044 0.26 -0.4
4,241,126 - MPMX20_04044 0.26 +3.4
4,241,128 + MPMX20_04044 0.26 -0.6
4,241,152 + MPMX20_04044 0.28 +1.0
4,241,152 + MPMX20_04044 0.28 +2.4
4,241,188 + MPMX20_04044 0.31 -1.9
4,241,201 + MPMX20_04044 0.32 -2.7
4,241,229 + MPMX20_04044 0.35 +1.4
4,241,229 + MPMX20_04044 0.35 -2.0
4,241,237 - MPMX20_04044 0.36 -0.6
4,241,258 + MPMX20_04044 0.37 -1.4
4,241,264 + MPMX20_04044 0.38 +1.7
4,241,310 - MPMX20_04044 0.42 +1.4
4,241,312 + MPMX20_04044 0.42 -0.6
4,241,312 + MPMX20_04044 0.42 +0.3
4,241,312 + MPMX20_04044 0.42 +0.0
4,241,313 + MPMX20_04044 0.42 +0.6
4,241,320 - MPMX20_04044 0.43 -0.9
4,241,320 - MPMX20_04044 0.43 -0.0
4,241,369 + MPMX20_04044 0.47 -0.1
4,241,369 + MPMX20_04044 0.47 -0.2
4,241,369 + MPMX20_04044 0.47 -1.9
4,241,377 - MPMX20_04044 0.48 -0.9
4,241,377 - MPMX20_04044 0.48 -2.1
4,241,377 - MPMX20_04044 0.48 +0.6
4,241,377 - MPMX20_04044 0.48 -0.4
4,241,377 - MPMX20_04044 0.48 -1.8
4,241,489 + MPMX20_04044 0.58 +2.2
4,241,497 - MPMX20_04044 0.58 -1.6
4,241,524 + MPMX20_04044 0.61 +0.4
4,241,524 + MPMX20_04044 0.61 +1.1
4,241,543 - MPMX20_04044 0.63 +0.5
4,241,546 + MPMX20_04044 0.63 +1.3
4,241,609 + MPMX20_04044 0.68 -1.9
4,241,659 - MPMX20_04044 0.73 -0.2
4,241,734 - MPMX20_04044 0.79 -0.3
4,241,762 - MPMX20_04044 0.82 +0.2
4,241,798 - MPMX20_04044 0.85 -0.9
4,241,798 - MPMX20_04044 0.85 -0.9
4,241,817 + MPMX20_04044 0.87 +0.3
4,241,825 - MPMX20_04044 0.87 -3.2

Or see this region's nucleotide sequence