Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03569

Experiment: LB plate, 1:1 coculture with Pseudomonas_plecoglossicida_TBS_049

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03568 and MPMX20_03569 are separated by 83 nucleotidesMPMX20_03569 and MPMX20_03570 overlap by 4 nucleotidesMPMX20_03570 and MPMX20_03571 are separated by 264 nucleotides MPMX20_03568: MPMX20_03568 - Glutamate--cysteine ligase, at 3,762,420 to 3,763,964 _03568 MPMX20_03569: MPMX20_03569 - Inner membrane protein YqaA, at 3,764,048 to 3,764,476 _03569 MPMX20_03570: MPMX20_03570 - Fructose-1-phosphate phosphatase YqaB, at 3,764,473 to 3,765,039 _03570 MPMX20_03571: MPMX20_03571 - tRNA-Arg, at 3,765,304 to 3,765,380 _03571 Position (kb) 3764 3765Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7 8at 3763.260 kb on - strand, within MPMX20_03568at 3763.260 kb on - strand, within MPMX20_03568at 3763.279 kb on - strand, within MPMX20_03568at 3763.285 kb on - strand, within MPMX20_03568at 3763.293 kb on - strand, within MPMX20_03568at 3763.388 kb on + strand, within MPMX20_03568at 3763.401 kb on - strand, within MPMX20_03568at 3763.430 kb on + strand, within MPMX20_03568at 3763.430 kb on + strand, within MPMX20_03568at 3763.442 kb on - strand, within MPMX20_03568at 3763.517 kb on - strand, within MPMX20_03568at 3763.626 kb on + strand, within MPMX20_03568at 3763.634 kb on - strand, within MPMX20_03568at 3763.645 kb on - strand, within MPMX20_03568at 3763.818 kb on + strandat 3763.826 kb on - strandat 3763.851 kb on + strandat 3763.851 kb on + strandat 3763.882 kb on - strandat 3763.906 kb on - strandat 3763.971 kb on - strandat 3764.005 kb on - strandat 3764.060 kb on + strandat 3764.060 kb on + strandat 3764.061 kb on + strandat 3764.061 kb on + strandat 3764.061 kb on + strandat 3764.068 kb on - strandat 3764.069 kb on - strandat 3764.069 kb on - strandat 3764.069 kb on - strandat 3764.069 kb on - strandat 3764.074 kb on + strandat 3764.082 kb on - strandat 3764.139 kb on + strand, within MPMX20_03569at 3764.145 kb on - strand, within MPMX20_03569at 3764.247 kb on + strand, within MPMX20_03569at 3764.248 kb on - strand, within MPMX20_03569at 3764.286 kb on - strand, within MPMX20_03569at 3764.286 kb on - strand, within MPMX20_03569at 3764.296 kb on + strand, within MPMX20_03569at 3764.314 kb on - strand, within MPMX20_03569at 3764.314 kb on - strand, within MPMX20_03569at 3764.322 kb on + strand, within MPMX20_03569at 3764.352 kb on + strand, within MPMX20_03569at 3764.357 kb on + strand, within MPMX20_03569at 3764.368 kb on + strand, within MPMX20_03569at 3764.372 kb on + strand, within MPMX20_03569at 3764.479 kb on - strandat 3764.484 kb on - strandat 3764.560 kb on - strand, within MPMX20_03570at 3764.580 kb on + strand, within MPMX20_03570at 3764.588 kb on - strand, within MPMX20_03570at 3764.667 kb on + strand, within MPMX20_03570at 3764.675 kb on - strand, within MPMX20_03570at 3764.675 kb on - strand, within MPMX20_03570at 3764.675 kb on - strand, within MPMX20_03570at 3764.675 kb on - strand, within MPMX20_03570at 3764.675 kb on - strand, within MPMX20_03570at 3764.708 kb on - strand, within MPMX20_03570at 3764.738 kb on - strand, within MPMX20_03570at 3764.783 kb on - strand, within MPMX20_03570at 3764.957 kb on + strand, within MPMX20_03570at 3764.960 kb on - strand, within MPMX20_03570at 3764.986 kb on + strandat 3764.994 kb on - strandat 3764.994 kb on - strandat 3764.994 kb on - strandat 3765.020 kb on + strandat 3765.022 kb on + strandat 3765.030 kb on - strandat 3765.191 kb on - strandat 3765.355 kb on + strand, within MPMX20_03571at 3765.473 kb on - strandat 3765.473 kb on - strandat 3765.473 kb on - strandat 3765.475 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB plate, 1:1 coculture with Pseudomonas_plecoglossicida_TBS_049
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3,763,260 - MPMX20_03568 0.54 -3.3
3,763,260 - MPMX20_03568 0.54 -2.0
3,763,279 - MPMX20_03568 0.56 -2.8
3,763,285 - MPMX20_03568 0.56 -2.0
3,763,293 - MPMX20_03568 0.57 -0.6
3,763,388 + MPMX20_03568 0.63 -1.6
3,763,401 - MPMX20_03568 0.63 -1.3
3,763,430 + MPMX20_03568 0.65 -3.4
3,763,430 + MPMX20_03568 0.65 +0.7
3,763,442 - MPMX20_03568 0.66 -1.5
3,763,517 - MPMX20_03568 0.71 -1.1
3,763,626 + MPMX20_03568 0.78 -1.1
3,763,634 - MPMX20_03568 0.79 -2.7
3,763,645 - MPMX20_03568 0.79 -2.5
3,763,818 + -2.3
3,763,826 - -0.3
3,763,851 + +1.0
3,763,851 + +0.4
3,763,882 - -2.2
3,763,906 - -0.1
3,763,971 - +3.0
3,764,005 - -0.1
3,764,060 + -1.1
3,764,060 + -2.2
3,764,061 + -0.3
3,764,061 + -0.7
3,764,061 + -0.8
3,764,068 - -0.4
3,764,069 - -0.1
3,764,069 - +8.1
3,764,069 - -0.2
3,764,069 - +1.5
3,764,074 + +1.0
3,764,082 - +1.4
3,764,139 + MPMX20_03569 0.21 +0.5
3,764,145 - MPMX20_03569 0.23 +2.0
3,764,247 + MPMX20_03569 0.46 +1.6
3,764,248 - MPMX20_03569 0.47 -0.2
3,764,286 - MPMX20_03569 0.55 -0.4
3,764,286 - MPMX20_03569 0.55 -0.9
3,764,296 + MPMX20_03569 0.58 -1.2
3,764,314 - MPMX20_03569 0.62 -1.0
3,764,314 - MPMX20_03569 0.62 +3.0
3,764,322 + MPMX20_03569 0.64 +1.5
3,764,352 + MPMX20_03569 0.71 +1.4
3,764,357 + MPMX20_03569 0.72 +0.1
3,764,368 + MPMX20_03569 0.75 +1.2
3,764,372 + MPMX20_03569 0.76 +1.1
3,764,479 - +2.8
3,764,484 - -1.4
3,764,560 - MPMX20_03570 0.15 -0.2
3,764,580 + MPMX20_03570 0.19 -0.7
3,764,588 - MPMX20_03570 0.20 -0.5
3,764,667 + MPMX20_03570 0.34 -0.1
3,764,675 - MPMX20_03570 0.36 -1.3
3,764,675 - MPMX20_03570 0.36 -3.0
3,764,675 - MPMX20_03570 0.36 +0.1
3,764,675 - MPMX20_03570 0.36 -0.6
3,764,675 - MPMX20_03570 0.36 +0.7
3,764,708 - MPMX20_03570 0.41 +0.6
3,764,738 - MPMX20_03570 0.47 -0.6
3,764,783 - MPMX20_03570 0.55 -1.4
3,764,957 + MPMX20_03570 0.85 +1.0
3,764,960 - MPMX20_03570 0.86 +0.3
3,764,986 + -2.8
3,764,994 - -1.2
3,764,994 - -3.4
3,764,994 - -0.6
3,765,020 + +2.2
3,765,022 + -0.6
3,765,030 - +1.2
3,765,191 - -0.2
3,765,355 + MPMX20_03571 0.66 -1.5
3,765,473 - -1.4
3,765,473 - -0.1
3,765,473 - -2.7
3,765,475 + -1.0

Or see this region's nucleotide sequence