Experiment: LB plate, 1:1 coculture with Pseudomonas_plecoglossicida_TBS_049
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03568 and MPMX20_03569 are separated by 83 nucleotides MPMX20_03569 and MPMX20_03570 overlap by 4 nucleotides MPMX20_03570 and MPMX20_03571 are separated by 264 nucleotides
MPMX20_03568: MPMX20_03568 - Glutamate--cysteine ligase, at 3,762,420 to 3,763,964
_03568
MPMX20_03569: MPMX20_03569 - Inner membrane protein YqaA, at 3,764,048 to 3,764,476
_03569
MPMX20_03570: MPMX20_03570 - Fructose-1-phosphate phosphatase YqaB, at 3,764,473 to 3,765,039
_03570
MPMX20_03571: MPMX20_03571 - tRNA-Arg, at 3,765,304 to 3,765,380
_03571
Position (kb)
3764
3765 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6
7
8 at 3763.260 kb on - strand, within MPMX20_03568 at 3763.260 kb on - strand, within MPMX20_03568 at 3763.279 kb on - strand, within MPMX20_03568 at 3763.285 kb on - strand, within MPMX20_03568 at 3763.293 kb on - strand, within MPMX20_03568 at 3763.388 kb on + strand, within MPMX20_03568 at 3763.401 kb on - strand, within MPMX20_03568 at 3763.430 kb on + strand, within MPMX20_03568 at 3763.430 kb on + strand, within MPMX20_03568 at 3763.442 kb on - strand, within MPMX20_03568 at 3763.517 kb on - strand, within MPMX20_03568 at 3763.626 kb on + strand, within MPMX20_03568 at 3763.634 kb on - strand, within MPMX20_03568 at 3763.645 kb on - strand, within MPMX20_03568 at 3763.818 kb on + strand at 3763.826 kb on - strand at 3763.851 kb on + strand at 3763.851 kb on + strand at 3763.882 kb on - strand at 3763.906 kb on - strand at 3763.971 kb on - strand at 3764.005 kb on - strand at 3764.060 kb on + strand at 3764.060 kb on + strand at 3764.061 kb on + strand at 3764.061 kb on + strand at 3764.061 kb on + strand at 3764.068 kb on - strand at 3764.069 kb on - strand at 3764.069 kb on - strand at 3764.069 kb on - strand at 3764.069 kb on - strand at 3764.074 kb on + strand at 3764.082 kb on - strand at 3764.139 kb on + strand, within MPMX20_03569 at 3764.145 kb on - strand, within MPMX20_03569 at 3764.247 kb on + strand, within MPMX20_03569 at 3764.248 kb on - strand, within MPMX20_03569 at 3764.286 kb on - strand, within MPMX20_03569 at 3764.286 kb on - strand, within MPMX20_03569 at 3764.296 kb on + strand, within MPMX20_03569 at 3764.314 kb on - strand, within MPMX20_03569 at 3764.314 kb on - strand, within MPMX20_03569 at 3764.322 kb on + strand, within MPMX20_03569 at 3764.352 kb on + strand, within MPMX20_03569 at 3764.357 kb on + strand, within MPMX20_03569 at 3764.368 kb on + strand, within MPMX20_03569 at 3764.372 kb on + strand, within MPMX20_03569 at 3764.479 kb on - strand at 3764.484 kb on - strand at 3764.560 kb on - strand, within MPMX20_03570 at 3764.580 kb on + strand, within MPMX20_03570 at 3764.588 kb on - strand, within MPMX20_03570 at 3764.667 kb on + strand, within MPMX20_03570 at 3764.675 kb on - strand, within MPMX20_03570 at 3764.675 kb on - strand, within MPMX20_03570 at 3764.675 kb on - strand, within MPMX20_03570 at 3764.675 kb on - strand, within MPMX20_03570 at 3764.675 kb on - strand, within MPMX20_03570 at 3764.708 kb on - strand, within MPMX20_03570 at 3764.738 kb on - strand, within MPMX20_03570 at 3764.783 kb on - strand, within MPMX20_03570 at 3764.957 kb on + strand, within MPMX20_03570 at 3764.960 kb on - strand, within MPMX20_03570 at 3764.986 kb on + strand at 3764.994 kb on - strand at 3764.994 kb on - strand at 3764.994 kb on - strand at 3765.020 kb on + strand at 3765.022 kb on + strand at 3765.030 kb on - strand at 3765.191 kb on - strand at 3765.355 kb on + strand, within MPMX20_03571 at 3765.473 kb on - strand at 3765.473 kb on - strand at 3765.473 kb on - strand at 3765.475 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB plate, 1:1 coculture with Pseudomonas_plecoglossicida_TBS_049 remove 3,763,260 - MPMX20_03568 0.54 -3.3 3,763,260 - MPMX20_03568 0.54 -2.0 3,763,279 - MPMX20_03568 0.56 -2.8 3,763,285 - MPMX20_03568 0.56 -2.0 3,763,293 - MPMX20_03568 0.57 -0.6 3,763,388 + MPMX20_03568 0.63 -1.6 3,763,401 - MPMX20_03568 0.63 -1.3 3,763,430 + MPMX20_03568 0.65 -3.4 3,763,430 + MPMX20_03568 0.65 +0.7 3,763,442 - MPMX20_03568 0.66 -1.5 3,763,517 - MPMX20_03568 0.71 -1.1 3,763,626 + MPMX20_03568 0.78 -1.1 3,763,634 - MPMX20_03568 0.79 -2.7 3,763,645 - MPMX20_03568 0.79 -2.5 3,763,818 + -2.3 3,763,826 - -0.3 3,763,851 + +1.0 3,763,851 + +0.4 3,763,882 - -2.2 3,763,906 - -0.1 3,763,971 - +3.0 3,764,005 - -0.1 3,764,060 + -1.1 3,764,060 + -2.2 3,764,061 + -0.3 3,764,061 + -0.7 3,764,061 + -0.8 3,764,068 - -0.4 3,764,069 - -0.1 3,764,069 - +8.1 3,764,069 - -0.2 3,764,069 - +1.5 3,764,074 + +1.0 3,764,082 - +1.4 3,764,139 + MPMX20_03569 0.21 +0.5 3,764,145 - MPMX20_03569 0.23 +2.0 3,764,247 + MPMX20_03569 0.46 +1.6 3,764,248 - MPMX20_03569 0.47 -0.2 3,764,286 - MPMX20_03569 0.55 -0.4 3,764,286 - MPMX20_03569 0.55 -0.9 3,764,296 + MPMX20_03569 0.58 -1.2 3,764,314 - MPMX20_03569 0.62 -1.0 3,764,314 - MPMX20_03569 0.62 +3.0 3,764,322 + MPMX20_03569 0.64 +1.5 3,764,352 + MPMX20_03569 0.71 +1.4 3,764,357 + MPMX20_03569 0.72 +0.1 3,764,368 + MPMX20_03569 0.75 +1.2 3,764,372 + MPMX20_03569 0.76 +1.1 3,764,479 - +2.8 3,764,484 - -1.4 3,764,560 - MPMX20_03570 0.15 -0.2 3,764,580 + MPMX20_03570 0.19 -0.7 3,764,588 - MPMX20_03570 0.20 -0.5 3,764,667 + MPMX20_03570 0.34 -0.1 3,764,675 - MPMX20_03570 0.36 -1.3 3,764,675 - MPMX20_03570 0.36 -3.0 3,764,675 - MPMX20_03570 0.36 +0.1 3,764,675 - MPMX20_03570 0.36 -0.6 3,764,675 - MPMX20_03570 0.36 +0.7 3,764,708 - MPMX20_03570 0.41 +0.6 3,764,738 - MPMX20_03570 0.47 -0.6 3,764,783 - MPMX20_03570 0.55 -1.4 3,764,957 + MPMX20_03570 0.85 +1.0 3,764,960 - MPMX20_03570 0.86 +0.3 3,764,986 + -2.8 3,764,994 - -1.2 3,764,994 - -3.4 3,764,994 - -0.6 3,765,020 + +2.2 3,765,022 + -0.6 3,765,030 - +1.2 3,765,191 - -0.2 3,765,355 + MPMX20_03571 0.66 -1.5 3,765,473 - -1.4 3,765,473 - -0.1 3,765,473 - -2.7 3,765,475 + -1.0
Or see this region's nucleotide sequence