Experiment: LB plate, 1:1 coculture with Pseudomonas_plecoglossicida_TBS_049
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02350 and MPMX20_02351 are separated by 173 nucleotides MPMX20_02351 and MPMX20_02352 are separated by 89 nucleotides
MPMX20_02350: MPMX20_02350 - Sucrose porin, at 2,476,788 to 2,478,305
_02350
MPMX20_02351: MPMX20_02351 - Fructokinase, at 2,478,479 to 2,479,384
_02351
MPMX20_02352: MPMX20_02352 - Blue light- and temperature-regulated antirepressor BluF, at 2,479,474 to 2,480,721
_02352
Position (kb)
2478
2479
2480 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2477.497 kb on - strand, within MPMX20_02350 at 2477.516 kb on - strand, within MPMX20_02350 at 2477.617 kb on + strand, within MPMX20_02350 at 2477.644 kb on - strand, within MPMX20_02350 at 2477.741 kb on + strand, within MPMX20_02350 at 2477.766 kb on - strand, within MPMX20_02350 at 2477.783 kb on - strand, within MPMX20_02350 at 2477.824 kb on + strand, within MPMX20_02350 at 2477.824 kb on + strand, within MPMX20_02350 at 2477.824 kb on + strand, within MPMX20_02350 at 2477.824 kb on + strand, within MPMX20_02350 at 2477.825 kb on + strand, within MPMX20_02350 at 2477.832 kb on - strand, within MPMX20_02350 at 2477.832 kb on - strand, within MPMX20_02350 at 2477.832 kb on - strand, within MPMX20_02350 at 2477.832 kb on - strand, within MPMX20_02350 at 2477.832 kb on - strand, within MPMX20_02350 at 2477.832 kb on - strand, within MPMX20_02350 at 2477.832 kb on - strand, within MPMX20_02350 at 2477.832 kb on - strand, within MPMX20_02350 at 2477.832 kb on - strand, within MPMX20_02350 at 2477.832 kb on - strand, within MPMX20_02350 at 2477.832 kb on - strand, within MPMX20_02350 at 2477.845 kb on + strand, within MPMX20_02350 at 2477.853 kb on - strand, within MPMX20_02350 at 2477.865 kb on - strand, within MPMX20_02350 at 2477.879 kb on + strand, within MPMX20_02350 at 2477.890 kb on - strand, within MPMX20_02350 at 2477.961 kb on - strand, within MPMX20_02350 at 2478.001 kb on - strand, within MPMX20_02350 at 2478.001 kb on - strand, within MPMX20_02350 at 2478.038 kb on - strand, within MPMX20_02350 at 2478.043 kb on + strand, within MPMX20_02350 at 2478.048 kb on - strand, within MPMX20_02350 at 2478.117 kb on - strand, within MPMX20_02350 at 2478.202 kb on - strand at 2478.442 kb on + strand at 2478.500 kb on - strand at 2478.548 kb on - strand at 2478.550 kb on + strand at 2478.553 kb on - strand at 2478.558 kb on - strand at 2478.619 kb on - strand, within MPMX20_02351 at 2478.632 kb on + strand, within MPMX20_02351 at 2478.640 kb on - strand, within MPMX20_02351 at 2478.640 kb on - strand, within MPMX20_02351 at 2478.720 kb on + strand, within MPMX20_02351 at 2478.780 kb on + strand, within MPMX20_02351 at 2478.841 kb on + strand, within MPMX20_02351 at 2478.862 kb on + strand, within MPMX20_02351 at 2478.870 kb on - strand, within MPMX20_02351 at 2478.988 kb on + strand, within MPMX20_02351 at 2478.988 kb on + strand, within MPMX20_02351 at 2478.996 kb on - strand, within MPMX20_02351 at 2479.000 kb on + strand, within MPMX20_02351 at 2479.000 kb on + strand, within MPMX20_02351 at 2479.030 kb on - strand, within MPMX20_02351 at 2479.035 kb on - strand, within MPMX20_02351 at 2479.087 kb on + strand, within MPMX20_02351 at 2479.176 kb on + strand, within MPMX20_02351 at 2479.287 kb on + strand, within MPMX20_02351 at 2479.480 kb on + strand at 2479.485 kb on + strand at 2479.485 kb on + strand at 2479.493 kb on - strand at 2479.566 kb on + strand at 2479.566 kb on + strand at 2479.634 kb on - strand, within MPMX20_02352 at 2479.794 kb on - strand, within MPMX20_02352 at 2479.807 kb on + strand, within MPMX20_02352 at 2479.817 kb on - strand, within MPMX20_02352 at 2479.881 kb on - strand, within MPMX20_02352 at 2479.928 kb on + strand, within MPMX20_02352 at 2480.118 kb on + strand, within MPMX20_02352 at 2480.201 kb on - strand, within MPMX20_02352 at 2480.293 kb on - strand, within MPMX20_02352
Per-strain Table
Position Strand Gene LocusTag Fraction LB plate, 1:1 coculture with Pseudomonas_plecoglossicida_TBS_049 remove 2,477,497 - MPMX20_02350 0.47 +2.1 2,477,516 - MPMX20_02350 0.48 +1.3 2,477,617 + MPMX20_02350 0.55 -1.0 2,477,644 - MPMX20_02350 0.56 -0.7 2,477,741 + MPMX20_02350 0.63 +2.0 2,477,766 - MPMX20_02350 0.64 +2.6 2,477,783 - MPMX20_02350 0.66 -1.7 2,477,824 + MPMX20_02350 0.68 -2.6 2,477,824 + MPMX20_02350 0.68 +0.4 2,477,824 + MPMX20_02350 0.68 +2.9 2,477,824 + MPMX20_02350 0.68 -2.0 2,477,825 + MPMX20_02350 0.68 -1.0 2,477,832 - MPMX20_02350 0.69 -0.3 2,477,832 - MPMX20_02350 0.69 -2.3 2,477,832 - MPMX20_02350 0.69 +0.9 2,477,832 - MPMX20_02350 0.69 -3.1 2,477,832 - MPMX20_02350 0.69 -0.6 2,477,832 - MPMX20_02350 0.69 -1.4 2,477,832 - MPMX20_02350 0.69 +4.5 2,477,832 - MPMX20_02350 0.69 +0.9 2,477,832 - MPMX20_02350 0.69 -0.2 2,477,832 - MPMX20_02350 0.69 +0.0 2,477,832 - MPMX20_02350 0.69 +2.3 2,477,845 + MPMX20_02350 0.70 +2.4 2,477,853 - MPMX20_02350 0.70 -1.8 2,477,865 - MPMX20_02350 0.71 +3.5 2,477,879 + MPMX20_02350 0.72 +0.5 2,477,890 - MPMX20_02350 0.73 +1.3 2,477,961 - MPMX20_02350 0.77 -2.5 2,478,001 - MPMX20_02350 0.80 +1.4 2,478,001 - MPMX20_02350 0.80 +1.6 2,478,038 - MPMX20_02350 0.82 +1.4 2,478,043 + MPMX20_02350 0.83 -1.2 2,478,048 - MPMX20_02350 0.83 -3.0 2,478,117 - MPMX20_02350 0.88 -0.0 2,478,202 - -0.1 2,478,442 + +0.1 2,478,500 - -0.4 2,478,548 - -1.9 2,478,550 + -1.6 2,478,553 - -1.7 2,478,558 - -1.3 2,478,619 - MPMX20_02351 0.15 +0.6 2,478,632 + MPMX20_02351 0.17 +1.5 2,478,640 - MPMX20_02351 0.18 +2.1 2,478,640 - MPMX20_02351 0.18 -2.9 2,478,720 + MPMX20_02351 0.27 -2.6 2,478,780 + MPMX20_02351 0.33 +0.3 2,478,841 + MPMX20_02351 0.40 +0.4 2,478,862 + MPMX20_02351 0.42 +1.5 2,478,870 - MPMX20_02351 0.43 +0.7 2,478,988 + MPMX20_02351 0.56 +1.8 2,478,988 + MPMX20_02351 0.56 +1.1 2,478,996 - MPMX20_02351 0.57 -2.6 2,479,000 + MPMX20_02351 0.58 -1.6 2,479,000 + MPMX20_02351 0.58 +2.6 2,479,030 - MPMX20_02351 0.61 +0.7 2,479,035 - MPMX20_02351 0.61 +0.9 2,479,087 + MPMX20_02351 0.67 -0.1 2,479,176 + MPMX20_02351 0.77 +0.3 2,479,287 + MPMX20_02351 0.89 -0.2 2,479,480 + -1.4 2,479,485 + -0.7 2,479,485 + -1.7 2,479,493 - -0.6 2,479,566 + -1.8 2,479,566 + +1.1 2,479,634 - MPMX20_02352 0.13 +0.9 2,479,794 - MPMX20_02352 0.26 -0.9 2,479,807 + MPMX20_02352 0.27 -1.5 2,479,817 - MPMX20_02352 0.27 -0.9 2,479,881 - MPMX20_02352 0.33 -0.0 2,479,928 + MPMX20_02352 0.36 -0.5 2,480,118 + MPMX20_02352 0.52 -2.2 2,480,201 - MPMX20_02352 0.58 +2.1 2,480,293 - MPMX20_02352 0.66 -0.9
Or see this region's nucleotide sequence