Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00811

Experiment: LB plate, 1:1 coculture with Pseudomonas_plecoglossicida_TBS_049

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00809 and MPMX20_00810 are separated by 52 nucleotidesMPMX20_00810 and MPMX20_00811 are separated by 10 nucleotidesMPMX20_00811 and MPMX20_00812 are separated by 412 nucleotides MPMX20_00809: MPMX20_00809 - Dihydrolipoyl dehydrogenase, at 849,122 to 850,546 _00809 MPMX20_00810: MPMX20_00810 - hypothetical protein, at 850,599 to 851,390 _00810 MPMX20_00811: MPMX20_00811 - hypothetical protein, at 851,401 to 852,930 _00811 MPMX20_00812: MPMX20_00812 - Aconitate hydratase B, at 853,343 to 855,940 _00812 Position (kb) 851 852 853Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7 8at 850.519 kb on + strandat 850.606 kb on - strandat 850.620 kb on + strandat 850.639 kb on + strandat 850.642 kb on + strandat 850.679 kb on + strand, within MPMX20_00810at 850.730 kb on - strand, within MPMX20_00810at 850.758 kb on - strand, within MPMX20_00810at 850.814 kb on - strand, within MPMX20_00810at 850.861 kb on - strand, within MPMX20_00810at 850.874 kb on + strand, within MPMX20_00810at 850.877 kb on - strand, within MPMX20_00810at 850.882 kb on - strand, within MPMX20_00810at 850.884 kb on + strand, within MPMX20_00810at 850.943 kb on + strand, within MPMX20_00810at 851.399 kb on + strandat 851.424 kb on + strandat 851.432 kb on - strandat 851.482 kb on + strandat 851.490 kb on - strandat 852.070 kb on - strand, within MPMX20_00811at 852.138 kb on + strand, within MPMX20_00811at 852.139 kb on + strand, within MPMX20_00811at 852.145 kb on + strand, within MPMX20_00811at 852.152 kb on + strand, within MPMX20_00811at 852.210 kb on + strand, within MPMX20_00811at 852.242 kb on + strand, within MPMX20_00811at 852.461 kb on + strand, within MPMX20_00811at 852.461 kb on + strand, within MPMX20_00811at 852.469 kb on - strand, within MPMX20_00811at 852.567 kb on + strand, within MPMX20_00811at 852.589 kb on + strand, within MPMX20_00811at 852.598 kb on - strand, within MPMX20_00811at 852.623 kb on - strand, within MPMX20_00811at 852.709 kb on - strand, within MPMX20_00811at 852.723 kb on - strand, within MPMX20_00811at 852.879 kb on + strandat 852.879 kb on + strandat 852.879 kb on + strandat 852.879 kb on + strandat 852.887 kb on - strandat 852.955 kb on - strandat 852.959 kb on + strandat 852.959 kb on + strandat 852.967 kb on + strandat 852.975 kb on - strandat 853.016 kb on - strandat 853.112 kb on + strandat 853.112 kb on - strandat 853.212 kb on + strandat 853.212 kb on + strandat 853.212 kb on + strandat 853.212 kb on + strandat 853.212 kb on + strandat 853.220 kb on - strandat 853.220 kb on - strandat 853.220 kb on - strandat 853.220 kb on - strandat 853.233 kb on + strandat 853.261 kb on + strandat 853.290 kb on - strandat 853.499 kb on + strandat 853.502 kb on - strandat 853.502 kb on - strandat 853.572 kb on + strandat 853.575 kb on + strandat 853.609 kb on + strand, within MPMX20_00812at 853.609 kb on + strand, within MPMX20_00812at 853.609 kb on + strand, within MPMX20_00812at 853.614 kb on + strand, within MPMX20_00812at 853.622 kb on - strand, within MPMX20_00812at 853.701 kb on + strand, within MPMX20_00812at 853.709 kb on + strand, within MPMX20_00812at 853.709 kb on - strand, within MPMX20_00812at 853.726 kb on + strand, within MPMX20_00812at 853.734 kb on - strand, within MPMX20_00812at 853.734 kb on - strand, within MPMX20_00812at 853.794 kb on - strand, within MPMX20_00812at 853.794 kb on - strand, within MPMX20_00812at 853.818 kb on + strand, within MPMX20_00812at 853.826 kb on - strand, within MPMX20_00812at 853.826 kb on - strand, within MPMX20_00812at 853.826 kb on - strand, within MPMX20_00812at 853.826 kb on - strand, within MPMX20_00812

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Per-strain Table

Position Strand Gene LocusTag Fraction LB plate, 1:1 coculture with Pseudomonas_plecoglossicida_TBS_049
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850,519 + -1.9
850,606 - -0.4
850,620 + -1.8
850,639 + +0.9
850,642 + -2.6
850,679 + MPMX20_00810 0.10 +0.6
850,730 - MPMX20_00810 0.17 +1.2
850,758 - MPMX20_00810 0.20 -2.0
850,814 - MPMX20_00810 0.27 -1.2
850,861 - MPMX20_00810 0.33 -1.8
850,874 + MPMX20_00810 0.35 +0.9
850,877 - MPMX20_00810 0.35 -0.7
850,882 - MPMX20_00810 0.36 +0.3
850,884 + MPMX20_00810 0.36 -0.6
850,943 + MPMX20_00810 0.43 +0.9
851,399 + -3.5
851,424 + +1.0
851,432 - -0.7
851,482 + -1.1
851,490 - -0.2
852,070 - MPMX20_00811 0.44 -0.5
852,138 + MPMX20_00811 0.48 -1.4
852,139 + MPMX20_00811 0.48 -0.8
852,145 + MPMX20_00811 0.49 +0.5
852,152 + MPMX20_00811 0.49 -1.4
852,210 + MPMX20_00811 0.53 -0.2
852,242 + MPMX20_00811 0.55 -0.0
852,461 + MPMX20_00811 0.69 -1.7
852,461 + MPMX20_00811 0.69 +8.3
852,469 - MPMX20_00811 0.70 -0.6
852,567 + MPMX20_00811 0.76 +0.9
852,589 + MPMX20_00811 0.78 -0.1
852,598 - MPMX20_00811 0.78 -1.8
852,623 - MPMX20_00811 0.80 -0.1
852,709 - MPMX20_00811 0.85 +0.2
852,723 - MPMX20_00811 0.86 +1.2
852,879 + -0.7
852,879 + -1.3
852,879 + -0.1
852,879 + +1.3
852,887 - -1.3
852,955 - -2.1
852,959 + -3.3
852,959 + -0.9
852,967 + -0.4
852,975 - +0.9
853,016 - +0.9
853,112 + +1.0
853,112 - +0.6
853,212 + -3.2
853,212 + +0.2
853,212 + +1.2
853,212 + -1.1
853,212 + -0.5
853,220 - +0.1
853,220 - -3.1
853,220 - -1.1
853,220 - -1.6
853,233 + +0.2
853,261 + -1.7
853,290 - +1.4
853,499 + +1.4
853,502 - -0.7
853,502 - -1.2
853,572 + -0.2
853,575 + +1.4
853,609 + MPMX20_00812 0.10 +2.0
853,609 + MPMX20_00812 0.10 +1.4
853,609 + MPMX20_00812 0.10 -0.0
853,614 + MPMX20_00812 0.10 -1.1
853,622 - MPMX20_00812 0.11 -0.5
853,701 + MPMX20_00812 0.14 +0.6
853,709 + MPMX20_00812 0.14 -1.1
853,709 - MPMX20_00812 0.14 -0.2
853,726 + MPMX20_00812 0.15 -1.4
853,734 - MPMX20_00812 0.15 -0.0
853,734 - MPMX20_00812 0.15 +2.0
853,794 - MPMX20_00812 0.17 +2.0
853,794 - MPMX20_00812 0.17 -0.4
853,818 + MPMX20_00812 0.18 -0.4
853,826 - MPMX20_00812 0.19 -1.4
853,826 - MPMX20_00812 0.19 -0.9
853,826 - MPMX20_00812 0.19 +0.6
853,826 - MPMX20_00812 0.19 +0.2

Or see this region's nucleotide sequence