Experiment: LB plate, 1:1 coculture with Pseudomonas_plecoglossicida_TBS_049
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00791 and MPMX20_00792 are separated by 57 nucleotides MPMX20_00792 and MPMX20_00793 are separated by 1 nucleotides MPMX20_00793 and MPMX20_00794 are separated by 9 nucleotides MPMX20_00794 and MPMX20_00795 overlap by 1 nucleotides
MPMX20_00791: MPMX20_00791 - Protein translocase subunit SecA, at 827,408 to 830,113
_00791
MPMX20_00792: MPMX20_00792 - 8-oxo-dGTP diphosphatase, at 830,171 to 830,563
_00792
MPMX20_00793: MPMX20_00793 - DNA gyrase inhibitor YacG, at 830,565 to 830,759
_00793
MPMX20_00794: MPMX20_00794 - Cell division protein ZapD, at 830,769 to 831,512
_00794
MPMX20_00795: MPMX20_00795 - Dephospho-CoA kinase, at 831,512 to 832,132
_00795
Position (kb) 830
831 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8
9
10 at 829.873 kb on + strand at 829.900 kb on - strand at 829.981 kb on + strand at 829.981 kb on + strand at 830.035 kb on + strand at 830.089 kb on + strand at 830.323 kb on - strand, within MPMX20_00792 at 830.364 kb on - strand, within MPMX20_00792 at 830.369 kb on - strand, within MPMX20_00792 at 830.414 kb on + strand, within MPMX20_00792 at 830.415 kb on - strand, within MPMX20_00792 at 830.419 kb on + strand, within MPMX20_00792 at 830.426 kb on - strand, within MPMX20_00792 at 830.455 kb on + strand, within MPMX20_00792 at 830.458 kb on - strand, within MPMX20_00792 at 830.481 kb on + strand, within MPMX20_00792 at 830.544 kb on + strand at 830.581 kb on - strand at 830.585 kb on + strand, within MPMX20_00793 at 830.585 kb on + strand, within MPMX20_00793 at 830.593 kb on - strand, within MPMX20_00793 at 830.603 kb on - strand, within MPMX20_00793 at 830.677 kb on - strand, within MPMX20_00793 at 830.711 kb on - strand, within MPMX20_00793 at 830.745 kb on + strand at 830.767 kb on + strand at 830.768 kb on + strand at 830.776 kb on - strand at 830.781 kb on - strand at 830.783 kb on + strand at 830.875 kb on + strand, within MPMX20_00794 at 830.899 kb on + strand, within MPMX20_00794 at 830.910 kb on + strand, within MPMX20_00794 at 830.923 kb on - strand, within MPMX20_00794 at 830.929 kb on + strand, within MPMX20_00794 at 831.025 kb on + strand, within MPMX20_00794 at 831.090 kb on + strand, within MPMX20_00794 at 831.275 kb on - strand, within MPMX20_00794 at 831.285 kb on + strand, within MPMX20_00794 at 831.293 kb on - strand, within MPMX20_00794 at 831.387 kb on + strand, within MPMX20_00794 at 831.546 kb on - strand at 831.548 kb on + strand at 831.548 kb on + strand at 831.549 kb on + strand at 831.557 kb on - strand at 831.557 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB plate, 1:1 coculture with Pseudomonas_plecoglossicida_TBS_049 remove 829,873 + -0.6 829,900 - -0.7 829,981 + +0.7 829,981 + +0.4 830,035 + -1.1 830,089 + -2.4 830,323 - MPMX20_00792 0.39 +0.2 830,364 - MPMX20_00792 0.49 -3.2 830,369 - MPMX20_00792 0.50 +0.6 830,414 + MPMX20_00792 0.62 -0.8 830,415 - MPMX20_00792 0.62 -1.6 830,419 + MPMX20_00792 0.63 -2.1 830,426 - MPMX20_00792 0.65 +0.1 830,455 + MPMX20_00792 0.72 +0.3 830,458 - MPMX20_00792 0.73 -1.2 830,481 + MPMX20_00792 0.79 +3.0 830,544 + -1.3 830,581 - +2.7 830,585 + MPMX20_00793 0.10 -2.8 830,585 + MPMX20_00793 0.10 -0.5 830,593 - MPMX20_00793 0.14 +10.7 830,603 - MPMX20_00793 0.19 +3.0 830,677 - MPMX20_00793 0.57 -0.2 830,711 - MPMX20_00793 0.75 +0.7 830,745 + -0.5 830,767 + -1.0 830,768 + -0.4 830,776 - -2.4 830,781 - -1.6 830,783 + -1.2 830,875 + MPMX20_00794 0.14 -0.6 830,899 + MPMX20_00794 0.17 -1.0 830,910 + MPMX20_00794 0.19 -1.3 830,923 - MPMX20_00794 0.21 +0.9 830,929 + MPMX20_00794 0.22 -1.9 831,025 + MPMX20_00794 0.34 -0.0 831,090 + MPMX20_00794 0.43 +0.3 831,275 - MPMX20_00794 0.68 -1.2 831,285 + MPMX20_00794 0.69 +0.2 831,293 - MPMX20_00794 0.70 -2.0 831,387 + MPMX20_00794 0.83 -2.8 831,546 - -0.7 831,548 + -0.0 831,548 + -3.1 831,549 + -1.6 831,557 - +1.8 831,557 - +0.4
Or see this region's nucleotide sequence