Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00653

Experiment: LB plate, 1:1 coculture with Pseudomonas_plecoglossicida_TBS_049

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00651 and MPMX20_00652 overlap by 4 nucleotidesMPMX20_00652 and MPMX20_00653 are separated by 148 nucleotidesMPMX20_00653 and MPMX20_00654 are separated by 84 nucleotidesMPMX20_00654 and MPMX20_00655 are separated by 41 nucleotides MPMX20_00651: MPMX20_00651 - DNA replication protein DnaC, at 677,160 to 677,897 _00651 MPMX20_00652: MPMX20_00652 - Primosomal protein 1, at 677,894 to 678,439 _00652 MPMX20_00653: MPMX20_00653 - Organic hydroperoxide resistance protein OhrB, at 678,588 to 679,016 _00653 MPMX20_00654: MPMX20_00654 - Organic hydroperoxide resistance transcriptional regulator, at 679,101 to 679,553 _00654 MPMX20_00655: MPMX20_00655 - HTH-type transcriptional repressor NicS, at 679,595 to 680,236 _00655 Position (kb) 678 679 680Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 678.444 kb on - strandat 678.444 kb on - strandat 678.444 kb on - strandat 678.450 kb on - strandat 678.460 kb on - strandat 678.482 kb on + strandat 678.482 kb on + strandat 678.514 kb on - strandat 678.522 kb on - strandat 678.574 kb on - strandat 678.656 kb on + strand, within MPMX20_00653at 678.757 kb on - strand, within MPMX20_00653at 678.847 kb on - strand, within MPMX20_00653at 678.856 kb on + strand, within MPMX20_00653at 678.861 kb on - strand, within MPMX20_00653at 678.866 kb on + strand, within MPMX20_00653at 678.871 kb on + strand, within MPMX20_00653at 678.871 kb on + strand, within MPMX20_00653at 678.874 kb on - strand, within MPMX20_00653at 678.874 kb on - strand, within MPMX20_00653at 678.874 kb on - strand, within MPMX20_00653at 678.879 kb on - strand, within MPMX20_00653at 678.928 kb on - strand, within MPMX20_00653at 679.049 kb on + strandat 679.091 kb on + strandat 679.093 kb on + strandat 679.101 kb on - strandat 679.129 kb on + strandat 679.150 kb on - strand, within MPMX20_00654at 679.165 kb on + strand, within MPMX20_00654at 679.165 kb on + strand, within MPMX20_00654at 679.165 kb on + strand, within MPMX20_00654at 679.171 kb on - strand, within MPMX20_00654at 679.173 kb on - strand, within MPMX20_00654at 679.173 kb on - strand, within MPMX20_00654at 679.244 kb on + strand, within MPMX20_00654at 679.244 kb on + strand, within MPMX20_00654at 679.250 kb on + strand, within MPMX20_00654at 679.252 kb on - strand, within MPMX20_00654at 679.252 kb on - strand, within MPMX20_00654at 679.320 kb on - strand, within MPMX20_00654at 679.373 kb on + strand, within MPMX20_00654at 679.381 kb on - strand, within MPMX20_00654at 679.381 kb on - strand, within MPMX20_00654at 679.393 kb on + strand, within MPMX20_00654at 679.459 kb on + strand, within MPMX20_00654at 679.459 kb on + strand, within MPMX20_00654at 679.459 kb on + strand, within MPMX20_00654at 679.459 kb on + strand, within MPMX20_00654at 679.488 kb on - strand, within MPMX20_00654at 679.503 kb on - strand, within MPMX20_00654at 679.605 kb on + strandat 679.605 kb on + strandat 679.605 kb on + strandat 679.613 kb on - strandat 679.613 kb on - strandat 679.613 kb on - strandat 679.613 kb on - strandat 679.654 kb on + strandat 679.654 kb on + strandat 679.662 kb on - strand, within MPMX20_00655at 679.695 kb on + strand, within MPMX20_00655at 679.696 kb on - strand, within MPMX20_00655at 679.741 kb on - strand, within MPMX20_00655at 679.824 kb on - strand, within MPMX20_00655at 679.837 kb on - strand, within MPMX20_00655at 679.844 kb on - strand, within MPMX20_00655at 679.856 kb on - strand, within MPMX20_00655at 679.903 kb on - strand, within MPMX20_00655at 679.930 kb on + strand, within MPMX20_00655at 679.938 kb on - strand, within MPMX20_00655at 679.938 kb on - strand, within MPMX20_00655at 679.951 kb on + strand, within MPMX20_00655at 679.955 kb on + strand, within MPMX20_00655at 679.973 kb on + strand, within MPMX20_00655at 679.977 kb on + strand, within MPMX20_00655at 679.996 kb on - strand, within MPMX20_00655

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Per-strain Table

Position Strand Gene LocusTag Fraction LB plate, 1:1 coculture with Pseudomonas_plecoglossicida_TBS_049
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678,444 - -2.4
678,444 - -0.3
678,444 - -1.2
678,450 - -3.1
678,460 - +1.4
678,482 + +2.0
678,482 + -0.6
678,514 - +4.0
678,522 - +1.0
678,574 - -1.0
678,656 + MPMX20_00653 0.16 +3.0
678,757 - MPMX20_00653 0.39 -0.3
678,847 - MPMX20_00653 0.60 +1.4
678,856 + MPMX20_00653 0.62 -0.2
678,861 - MPMX20_00653 0.64 -1.2
678,866 + MPMX20_00653 0.65 +2.0
678,871 + MPMX20_00653 0.66 +3.0
678,871 + MPMX20_00653 0.66 -0.6
678,874 - MPMX20_00653 0.67 -2.2
678,874 - MPMX20_00653 0.67 -3.1
678,874 - MPMX20_00653 0.67 +1.2
678,879 - MPMX20_00653 0.68 +4.7
678,928 - MPMX20_00653 0.79 -3.6
679,049 + +1.4
679,091 + +0.7
679,093 + -1.5
679,101 - -1.1
679,129 + +0.8
679,150 - MPMX20_00654 0.11 +1.7
679,165 + MPMX20_00654 0.14 +0.3
679,165 + MPMX20_00654 0.14 +0.0
679,165 + MPMX20_00654 0.14 -1.7
679,171 - MPMX20_00654 0.15 +0.5
679,173 - MPMX20_00654 0.16 +0.7
679,173 - MPMX20_00654 0.16 -0.4
679,244 + MPMX20_00654 0.32 +1.8
679,244 + MPMX20_00654 0.32 -0.9
679,250 + MPMX20_00654 0.33 -0.2
679,252 - MPMX20_00654 0.33 +0.8
679,252 - MPMX20_00654 0.33 -3.9
679,320 - MPMX20_00654 0.48 -0.6
679,373 + MPMX20_00654 0.60 -0.3
679,381 - MPMX20_00654 0.62 -1.9
679,381 - MPMX20_00654 0.62 +0.6
679,393 + MPMX20_00654 0.64 -1.3
679,459 + MPMX20_00654 0.79 -0.7
679,459 + MPMX20_00654 0.79 -0.5
679,459 + MPMX20_00654 0.79 -0.8
679,459 + MPMX20_00654 0.79 +0.4
679,488 - MPMX20_00654 0.85 +1.0
679,503 - MPMX20_00654 0.89 -0.0
679,605 + +0.1
679,605 + -1.0
679,605 + -1.7
679,613 - -1.9
679,613 - -0.2
679,613 - +2.2
679,613 - -1.1
679,654 + -1.7
679,654 + -2.1
679,662 - MPMX20_00655 0.10 -1.1
679,695 + MPMX20_00655 0.16 -1.2
679,696 - MPMX20_00655 0.16 +2.0
679,741 - MPMX20_00655 0.23 -0.2
679,824 - MPMX20_00655 0.36 -3.2
679,837 - MPMX20_00655 0.38 -0.7
679,844 - MPMX20_00655 0.39 -3.3
679,856 - MPMX20_00655 0.41 -1.7
679,903 - MPMX20_00655 0.48 +0.7
679,930 + MPMX20_00655 0.52 -2.0
679,938 - MPMX20_00655 0.53 -2.4
679,938 - MPMX20_00655 0.53 +1.6
679,951 + MPMX20_00655 0.55 -0.5
679,955 + MPMX20_00655 0.56 -2.9
679,973 + MPMX20_00655 0.59 +1.0
679,977 + MPMX20_00655 0.60 +0.2
679,996 - MPMX20_00655 0.62 +0.3

Or see this region's nucleotide sequence